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2DQU
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BU of 2dqu by Molmil
Crystal form II: high resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog
Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER
Authors:Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I.
Deposit date:2006-05-30
Release date:2006-06-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
2DQT
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BU of 2dqt by Molmil
High resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog
Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER
Authors:Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I.
Deposit date:2006-05-30
Release date:2006-06-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
6IGU
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BU of 6igu by Molmil
Crystal structure of the hydrolytic antibody Fab 9C10
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, IMMUNOGLOBULIN 9C10 H CHAIN, IMMUNOGLOBULIN 9C10 L CHAIN, ...
Authors:Yamaguchi, A, Tada, T, Tsuchiya, Y, Tsumuraya, T, Fujii, I.
Deposit date:2018-09-26
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of the complex of the hydrolytic antibody Fab 9C10 and a transition-state analog
To Be Published
2DTM
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BU of 2dtm by Molmil
Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies
Descriptor: IMMUNOGLOBULIN 6D9
Authors:Oda, M, Ito, N, Tsumuraya, T, Suzuki, K, Fujii, I.
Deposit date:2006-07-13
Release date:2007-05-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
1CT8
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BU of 1ct8 by Molmil
CATALYTIC ANTIBODY 7C8 COMPLEX
Descriptor: 7C8 FAB FRAGMENT; LONG CHAIN, 7C8 FAB FRAGMENT; SHORT CHAIN, SULFATE ION, ...
Authors:Gigant, B, Tsumuraya, T, Fujii, I, Knossow, M.
Deposit date:1999-08-20
Release date:1999-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Diverse structural solutions to catalysis in a family of antibodies.
Structure Fold.Des., 7, 1999
5XQW
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BU of 5xqw by Molmil
Catalytic antibody 7B9
Descriptor: Fab fragment of catalytic antibody 7B9, heavy chain, light chain, ...
Authors:Ito, N, Fujii, I, Tsumuraya, T.
Deposit date:2017-06-07
Release date:2018-04-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of the broad substrate tolerance of the antibody 7B9-catalyzed hydrolysis of p-nitrobenzyl esters.
Bioorg. Med. Chem., 26, 2018
6A9K
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BU of 6a9k by Molmil
Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog
Descriptor: 5-[(2R,3R)-2-[2,2-bis(chloranyl)ethanoylamino]-3-(4-nitrophenyl)-3-[oxidanyl-[[4-[2,2,2-tris(fluoranyl)ethanoylamino]phenyl]methyl]phosphoryl]oxy-propoxy]-5-oxidanylidene-pentanoic acid, IMMUNOGLOBULIN 9C10 H CHAIN, IMMUNOGLOBULIN 9C10 L CHAIN
Authors:Tsuchiya, Y, Fujii, I, Tada, T, Yamaguchi, A, Tsumuraya, T, Kumon, A.
Deposit date:2018-07-13
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog
To Be Published
3WXZ
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BU of 3wxz by Molmil
The structure of the I375F mutant of CsyB
Descriptor: Putative uncharacterized protein csyB
Authors:Mori, T, Yang, D, Matsui, T, Morita, H, Fujii, I, Abe, I.
Deposit date:2014-08-13
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Structural basis for the formation of acylalkylpyrones from two beta-ketoacyl units by the fungal type III polyketide synthase CsyB.
J.Biol.Chem., 290, 2015
3WY0
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BU of 3wy0 by Molmil
The I375W mutant of CsyB complexed with CoA-SH
Descriptor: COENZYME A, Putative uncharacterized protein csyB
Authors:Mori, T, Yang, D, Matsui, T, Morita, H, Fujii, I, Abe, I.
Deposit date:2014-08-13
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for the formation of acylalkylpyrones from two beta-ketoacyl units by the fungal type III polyketide synthase CsyB.
J.Biol.Chem., 290, 2015
3WXY
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BU of 3wxy by Molmil
Crystal structure of CsyB complexed with CoA-SH
Descriptor: COENZYME A, Putative uncharacterized protein csyB
Authors:Mori, T, Yang, D, Matsui, T, Morita, H, Fujii, I, Abe, I.
Deposit date:2014-08-13
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.706 Å)
Cite:Structural basis for the formation of acylalkylpyrones from two beta-ketoacyl units by the fungal type III polyketide synthase CsyB.
J.Biol.Chem., 290, 2015
2E27
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BU of 2e27 by Molmil
Crystal structure of Fv fragment of anti-ciguatoxin antibody complexed with ABC-ring of ciguatoxin
Descriptor: 3,7:6,10:9,14-TRIANHYDRO-2,5,11,12,13-PENTADEOXY-4-O-(METHOXYMETHYL)-L-ARABINO-L-ALLO-TETRADEC-12-ENONIC ACID, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Yokota, A, Tanaka, Y, Tsumoto, K.
Deposit date:2006-11-08
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Critical contribution of aromatic rings to specific recognition of polyether rings. The case of ciguatoxin CTX3C-ABC and its specific antibody 1C49.
J.Biol.Chem., 283, 2008
2Z92
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BU of 2z92 by Molmil
Crystal structure of the Fab fragment of anti-ciguatoxin antibody 10C9 in complex with CTX3C_ABCDE
Descriptor: (4Z)-2,8:7,12:11,15:14,18:17,22-PENTAANHYDRO-4,5,6,9,10,13,19,20,21-NONADEOXY-D-ARABINO-D-ALLO-D-ALLO-DOCOSA-4,9,20-TRIENITOL, Anti-ciguatoxin antibody 10C9 Fab heavy chain, Anti-ciguatoxin antibody 10C9 Fab light chain, ...
Authors:Ui, M, Tanaka, Y, Tsumoto, K.
Deposit date:2007-09-14
Release date:2008-05-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9
J.Biol.Chem., 283, 2008
2Z93
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BU of 2z93 by Molmil
Crystal structure of Fab fragment of anti-ciguatoxin antibody 10C9 in complex with CTX3C-ABCD
Descriptor: 1,6:5,9:8,12:11,16-TETRAANHYDRO-2,3,4,10,13,14-HEXADEOXY-D-GLYCERO-D-ALLO-D-GULO-HEPTADECA-2,13-DIENITOL, Anti-ciguatoxin antibody 10C9 Fab heavy chain, Anti-ciguatoxin antibody 10C9 Fab light chain
Authors:Ui, M, Tanaka, Y, Tsumoto, K.
Deposit date:2007-09-14
Release date:2008-05-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9
J.Biol.Chem., 283, 2008
2Z91
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BU of 2z91 by Molmil
Crystal structure of the Fab fragment of anti-ciguatoxin antibody 10C9
Descriptor: Anti-ciguatoxin antibody 10C9 FAB heavy chain, Anti-ciguatoxin antibody 10C9 FAB light chain
Authors:Ui, M, Tanaka, Y, Tsumoto, K.
Deposit date:2007-09-14
Release date:2008-05-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9
J.Biol.Chem., 283, 2008
3VVZ
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BU of 3vvz by Molmil
Crystal Strucuture of The Rhodamine 6G-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Descriptor: Putative regulatory protein, RHODAMINE 6G, SULFATE ION
Authors:Sakurai, K, Nikaido, E, Nakashima, R, Yamasaki, S, Yamaguchi, A, Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VVX
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BU of 3vvx by Molmil
Crystal Strucuture of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Descriptor: Putative regulatory protein, SULFATE ION
Authors:Sakurai, K, Nikaido, E, Nakashima, R, Yamasaki, S, Yamaguchi, A, Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VVY
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BU of 3vvy by Molmil
Crystal Strucuture of The Ethidium-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Descriptor: ETHIDIUM, Putative regulatory protein
Authors:Sakurai, K, Nikaido, E, Nakashima, R, Yamasaki, S, Yamaguchi, A, Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VW1
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BU of 3vw1 by Molmil
Crystal Strucuture of the Crystal Violet-Bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Descriptor: CHLORIDE ION, CRYSTAL VIOLET, Putative regulatory protein, ...
Authors:Sakurai, K, Yamasaki, S, Nakashima, R, Nikaido, E, Yamaguchi, A, Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VW0
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BU of 3vw0 by Molmil
Crystal Structure of The Dequalinum-bound Form of RamR (Transcriptional Regulator of TetR Family) From Salmonella Typhimurium
Descriptor: DEQUALINIUM, Putative regulatory protein, SULFATE ION
Authors:Sakurai, K, Yamasaki, S, Nakashima, R, Nikaido, E, Yamaguchi, A, Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VW2
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BU of 3vw2 by Molmil
Crystal Strucuture of The Berberine-bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium
Descriptor: BERBERINE, Putative regulatory protein, SULFATE ION
Authors:Sakurai, K, Nikaido, E, Nakashima, R, Yamasaki, S, Yamaguchi, A, Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3W8Q
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BU of 3w8q by Molmil
Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1)
Descriptor: Dual specificity mitogen-activated protein kinase kinase 1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Nakae, S, Kitamura, M, Shirai, T, Tada, T.
Deposit date:2013-03-20
Release date:2014-03-26
Last modified:2021-12-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of mitogen-activated protein kinase kinase 1 in the DFG-out conformation.
Acta Crystallogr.,Sect.F, 77, 2021

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