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2DQT
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HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE HYDROLYTIC ANTIBODY FAB 6D9 AND A TRANSITION-STATE ANALOG
Descriptor:IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER
Authors:Kristensen, O., Vassylyev, D.G., Tanaka, F., Ito, N., Morikawa, K., Fujii, I.
Deposit date:2006-05-30
Release date:2006-06-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
2DQU
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CRYSTAL FORM II: HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE HYDROLYTIC ANTIBODY FAB 6D9 AND A TRANSITION-STATE ANALOG
Descriptor:IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER
Authors:Kristensen, O., Vassylyev, D.G., Tanaka, F., Ito, N., Morikawa, K., Fujii, I.
Deposit date:2006-05-30
Release date:2006-06-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
2DTM
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THERMODYNAMIC AND STRUCTURAL ANALYSES OF HYDROLYTIC MECHANISM BY CATALYTIC ANTIBODIES
Descriptor:IMMUNOGLOBULIN 6D9
Authors:Oda, M., Ito, N., Tsumuraya, T., Suzuki, K., Fujii, I.
Deposit date:2006-07-13
Release date:2007-05-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
3WXY
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CRYSTAL STRUCTURE OF CSYB COMPLEXED WITH COA-SH
Descriptor:Putative uncharacterized protein csyB, COENZYME A
Authors:Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.
Deposit date:2014-08-13
Release date:2015-01-14
Method:X-RAY DIFFRACTION (1.706 Å)
Cite:Structural basis for the formation of acylalkylpyrones from two beta-ketoacyl units by the fungal type III polyketide synthase CsyB
J.Biol.Chem., 2015
3WXZ
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THE STRUCTURE OF THE I375F MUTANT OF CSYB
Descriptor:Putative uncharacterized protein csyB
Authors:Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.
Deposit date:2014-08-13
Release date:2015-01-14
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Structural basis for the formation of acylalkylpyrones from two beta-ketoacyl units by the fungal type III polyketide synthase CsyB
J.Biol.Chem., 2015
3WY0
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THE I375W MUTANT OF CSYB COMPLEXED WITH COA-SH
Descriptor:Putative uncharacterized protein csyB, COENZYME A
Authors:Mori, T., Yang, D., Matsui, T., Morita, H., Fujii, I., Abe, I.
Deposit date:2014-08-13
Release date:2015-01-14
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for the formation of acylalkylpyrones from two beta-ketoacyl units by the fungal type III polyketide synthase CsyB
J.Biol.Chem., 2015
1CT8
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CATALYTIC ANTIBODY 7C8 COMPLEX
Descriptor:7C8 FAB FRAGMENT; SHORT CHAIN, 7C8 FAB FRAGMENT; LONG CHAIN, SULFATE ION, ...
Authors:Gigant, B., Tsumuraya, T., Fujii, I., Knossow, M.
Deposit date:1999-08-20
Release date:1999-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Diverse structural solutions to catalysis in a family of antibodies.
Structure Fold.Des., 7, 1999
5XQW
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CATALYTIC ANTIBODY 7B9
Descriptor:Fab fragment of catalytic antibody 7B9, light chain, heavy chain, ...
Authors:Ito, N., Fujii, I., Tsumuraya, T.
Deposit date:2017-06-07
Release date:2018-04-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of the broad substrate tolerance of the antibody 7B9-catalyzed hydrolysis of p-nitrobenzyl esters.
Bioorg. Med. Chem., 26, 2018
2E27
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CRYSTAL STRUCTURE OF FV FRAGMENT OF ANTI-CIGUATOXIN ANTIBODY COMPLEXED WITH ABC-RING OF CIGUATOXIN
Descriptor:anti-ciguatoxin antibody, light chain, heavy chain, ...
Authors:Yokota, A., Tanaka, Y., Tsumoto, K.
Deposit date:2006-11-08
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Critical contribution of aromatic rings to specific recognition of polyether rings. The case of ciguatoxin CTX3C-ABC and its specific antibody 1C49.
J.Biol.Chem., 283, 2008
2Z91
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CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ANTI-CIGUATOXIN ANTIBODY 10C9
Descriptor:Anti-ciguatoxin antibody 10C9 FAB heavy chain, Anti-ciguatoxin antibody 10C9 FAB light chain
Authors:Ui, M., Tanaka, Y., Tsumoto, K.
Deposit date:2007-09-14
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9
J.Biol.Chem., 283, 2008
2Z92
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CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ANTI-CIGUATOXIN ANTIBODY 10C9 IN COMPLEX WITH CTX3C_ABCDE
Descriptor:Anti-ciguatoxin antibody 10C9 Fab heavy chain, Anti-ciguatoxin antibody 10C9 Fab light chain, (4Z)-2,8:7,12:11,15:14,18:17,22-PENTAANHYDRO-4,5,6,9,10,13,19,20,21-NONADEOXY-D-ARABINO-D-ALLO-D-ALLO-DOCOSA-4,9,20-TRIENITOL, ...
Authors:Ui, M., Tanaka, Y., Tsumoto, K.
Deposit date:2007-09-14
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9
J.Biol.Chem., 283, 2008
2Z93
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CRYSTAL STRUCTURE OF FAB FRAGMENT OF ANTI-CIGUATOXIN ANTIBODY 10C9 IN COMPLEX WITH CTX3C-ABCD
Descriptor:Anti-ciguatoxin antibody 10C9 Fab heavy chain, Anti-ciguatoxin antibody 10C9 Fab light chain, 1,6:5,9:8,12:11,16-TETRAANHYDRO-2,3,4,10,13,14-HEXADEOXY-D-GLYCERO-D-ALLO-D-GULO-HEPTADECA-2,13-DIENITOL
Authors:Ui, M., Tanaka, Y., Tsumoto, K.
Deposit date:2007-09-14
Release date:2008-05-06
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:How Protein Recognizes Ladder-like Polycyclic Ethers: INTERACTIONS BETWEEN CIGUATOXIN (CTX3C) FRAGMENTS AND ITS SPECIFIC ANTIBODY 10C9
J.Biol.Chem., 283, 2008
3VVX
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CRYSTAL STRUCUTURE OF RAMR (TRANSCRIPTIONAL REGURATOR OF TETR FAMILY) FROM SALMONELLA TYPHIMURIUM
Descriptor:Putative regulatory protein, SULFATE ION
Authors:Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VVY
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CRYSTAL STRUCUTURE OF THE ETHIDIUM-BOUND FORM OF RAMR (TRANSCRIPTIONAL REGURATOR OF TETR FAMILY) FROM SALMONELLA TYPHIMURIUM
Descriptor:Putative regulatory protein, ETHIDIUM
Authors:Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VVZ
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CRYSTAL STRUCUTURE OF THE RHODAMINE 6G-BOUND FORM OF RAMR (TRANSCRIPTIONAL REGURATOR OF TETR FAMILY) FROM SALMONELLA TYPHIMURIUM
Descriptor:Putative regulatory protein, RHODAMINE 6G, SULFATE ION
Authors:Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VW0
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CRYSTAL STRUCTURE OF THE DEQUALINUM-BOUND FORM OF RAMR (TRANSCRIPTIONAL REGULATOR OF TETR FAMILY) FROM SALMONELLA TYPHIMURIUM
Descriptor:Putative regulatory protein, SULFATE ION, DEQUALINIUM
Authors:Sakurai, K., Yamasaki, S., Nakashima, R., Nikaido, E., Yamaguchi, A., Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VW1
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CRYSTAL STRUCUTURE OF THE CRYSTAL VIOLET-BOUND FORM OF RAMR (TRANSCRIPTIONAL REGURATOR OF TETR FAMILY) FROM SALMONELLA TYPHIMURIUM
Descriptor:Putative regulatory protein, SULFATE ION, CHLORIDE ION, ...
Authors:Sakurai, K., Yamasaki, S., Nakashima, R., Nikaido, E., Yamaguchi, A., Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013
3VW2
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CRYSTAL STRUCUTURE OF THE BERBERINE-BOUND FORM OF RAMR (TRANSCRIPTIONAL REGURATOR OF TETR FAMILY) FROM SALMONELLA TYPHIMURIUM
Descriptor:Putative regulatory protein, BERBERINE, SULFATE ION
Authors:Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.
Deposit date:2012-07-30
Release date:2013-07-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:The crystal structure of multidrug-resistance regulator RamR with multiple drugs
Nat Commun, 4, 2013