Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6VKL
DownloadVisualize
BU of 6vkl by Molmil
Negative stain reconstruction of the yeast exocyst octameric complex.
Descriptor: Exocyst complex component EXO70, Exocyst complex component EXO84, Exocyst complex component SEC10, ...
Authors:Frost, A, Munson, M.
Deposit date:2020-01-21
Release date:2020-07-29
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Exocyst structural changes associated with activation of tethering downstream of Rho/Cdc42 GTPases.
J. Cell Biol., 219, 2020
5WP9
DownloadVisualize
BU of 5wp9 by Molmil
Structural Basis of Mitochondrial Receptor Binding and Constriction by Dynamin-Related Protein 1
Descriptor: Dynamin-1-like protein, MAGNESIUM ION, Mitochondrial dynamics protein MID49, ...
Authors:Kalia, R, Wang, R.Y.R, Yusuf, A, Thomas, P.V, Agard, D.A, Shaw, J.M, Frost, A.
Deposit date:2017-08-03
Release date:2018-06-20
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.22 Å)
Cite:Structural basis of mitochondrial receptor binding and constriction by DRP1.
Nature, 558, 2018
7LVK
DownloadVisualize
BU of 7lvk by Molmil
Cfr-modified 50S subunit from Escherichia coli
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Stojkovic, V, Myasnikov, A.G, Frost, A, Fujimori, D.G.
Deposit date:2021-02-25
Release date:2021-12-15
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Investigating antibiotic resistance of a ribosomal-RNA methylating enzyme through directed evolution
To Be Published
6E8G
DownloadVisualize
BU of 6e8g by Molmil
CryoEM reconstruction of IST1-CHMP1B copolymer filament bound to ssDNA at 2.9 Angstrom resolution
Descriptor: Charged multivesicular body protein 1b, IST1 homolog
Authors:Talledge, N, Frost, A, McCullough, J.
Deposit date:2018-07-29
Release date:2018-08-15
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The ESCRT-III proteins IST1 and CHMP1B assemble around nucleic acids
Biorxiv, 2018
7ADO
DownloadVisualize
BU of 7ado by Molmil
Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ...
Authors:Braeuning, B, Prabu, J.R, Miller-Vedam, L.E, Weissman, J.S, Frost, A, Schulman, B.A.
Deposit date:2020-09-15
Release date:2020-12-02
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.
Elife, 9, 2020
7ADP
DownloadVisualize
BU of 7adp by Molmil
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ER membrane protein complex subunit 10, ...
Authors:Braeuning, B, Prabu, J.R, Miller-Vedam, L.E, Weissman, J.S, Frost, A, Schulman, B.A.
Deposit date:2020-09-15
Release date:2020-12-02
Last modified:2020-12-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.
Elife, 9, 2020
6TZ9
DownloadVisualize
BU of 6tz9 by Molmil
CryoEM reconstruction of membrane-bound ESCRT-III filament composed of CHMP1B only
Descriptor: Charged multivesicular body protein 1b
Authors:Nguyen, H.C, Frost, A.
Deposit date:2019-08-11
Release date:2020-04-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Membrane constriction and thinning by sequential ESCRT-III polymerization.
Nat.Struct.Mol.Biol., 27, 2020
6TZ4
DownloadVisualize
BU of 6tz4 by Molmil
CryoEM reconstruction of membrane-bound ESCRT-III filament composed of CHMP1B+IST1 (right-handed)
Descriptor: Charged multivesicular body protein 1b, IST1 homolog
Authors:Nguyen, H.C, Frost, A.
Deposit date:2019-08-10
Release date:2020-04-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Membrane constriction and thinning by sequential ESCRT-III polymerization.
Nat.Struct.Mol.Biol., 27, 2020
3JC1
DownloadVisualize
BU of 3jc1 by Molmil
Electron cryo-microscopy of the IST1-CHMP1B ESCRT-III copolymer
Descriptor: Charged multivesicular body protein 1b, Increased Sodium Tolerance 1 (IST1)
Authors:McCullough, J, Clippinger, A.K, Talledge, N, Skowyra, M.L, Saunders, M.G, Naismith, T.V, Colf, L.A, Afonine, P, Arthur, C, Sundquist, W.I, Hanson, P.I, Frost, A.
Deposit date:2015-11-09
Release date:2015-12-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure and membrane remodeling activity of ESCRT-III helical polymers.
Science, 350, 2015
6PJ6
DownloadVisualize
BU of 6pj6 by Molmil
High resolution cryo-EM structure of E.coli 50S
Descriptor: 23S rRNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Stojkovic, V, Myasnikov, A, Frost, A, Fujimori, D.G.
Deposit date:2019-06-27
Release date:2020-01-22
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Assessment of the nucleotide modifications in the high-resolution cryo-electron microscopy structure of the Escherichia coli 50S subunit.
Nucleic Acids Res., 48, 2020
6TZ5
DownloadVisualize
BU of 6tz5 by Molmil
CryoEM reconstruction of membrane-bound ESCRT-III filament composed of CHMP1B+IST1 (left-handed)
Descriptor: Charged multivesicular body protein 1b, IST1 homolog
Authors:Nguyen, H.C, Frost, A.
Deposit date:2019-08-10
Release date:2020-04-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Membrane constriction and thinning by sequential ESCRT-III polymerization.
Nat.Struct.Mol.Biol., 27, 2020
6TZA
DownloadVisualize
BU of 6tza by Molmil
CryoEM reconstruction of ESCRT-III filament composed of IST1 NTD R16E K27E double mutant
Descriptor: IST1 homolog
Authors:Nguyen, H.C, Frost, A.
Deposit date:2019-08-11
Release date:2020-04-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Membrane constriction and thinning by sequential ESCRT-III polymerization.
Nat.Struct.Mol.Biol., 27, 2020
6CAJ
DownloadVisualize
BU of 6caj by Molmil
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens
Descriptor: 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Tsai, J.C, Miller-Vedam, L.E, Anand, A.A, Jaishankar, P, Nguyen, H.C, Renslo, A.R, Frost, A, Walter, P.
Deposit date:2018-01-31
Release date:2018-04-11
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule.
Science, 359, 2018
6O81
DownloadVisualize
BU of 6o81 by Molmil
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to translation initiation factor 2 from Homo sapiens
Descriptor: 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide, Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, ...
Authors:Nguyen, H, Kenner, L, Frost, A.
Deposit date:2019-03-08
Release date:2019-05-15
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:eIF2B-catalyzed nucleotide exchange and phosphoregulation by the integrated stress response.
Science, 364, 2019
7L7G
DownloadVisualize
BU of 7l7g by Molmil
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens (updated model of PDB ID: 6CAJ)
Descriptor: 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Tsai, J.C, Miller-Vedam, L.E, Anand, A, Jaishankar, P, Nguyen, H.C, Wang, L, Renslo, A.R, Frost, A, Walter, P.
Deposit date:2020-12-28
Release date:2021-03-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:eIF2B conformation and assembly state regulates the integrated stress response.
Elife, 10, 2021
7SSP
DownloadVisualize
BU of 7ssp by Molmil
Structure of the human COQ7:COQ9 complex by single-particle electron cryo-microscopy, unliganded state
Descriptor: 5-demethoxyubiquinone hydroxylase, mitochondrial, Ubiquinone biosynthesis protein COQ9
Authors:Aydin, H, Frost, A.
Deposit date:2021-11-11
Release date:2022-11-02
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and functionality of a multimeric human COQ7:COQ9 complex.
Mol.Cell, 82, 2022
7SSS
DownloadVisualize
BU of 7sss by Molmil
Structure of the NADH-bound human COQ7:COQ9 complex by single-particle electron cryo-microscopy
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL, 5-demethoxyubiquinone hydroxylase, ...
Authors:Aydin, H, Frost, A.
Deposit date:2021-11-11
Release date:2022-11-02
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure and functionality of a multimeric human COQ7:COQ9 complex.
Mol.Cell, 82, 2022
7TRJ
DownloadVisualize
BU of 7trj by Molmil
The eukaryotic translation initiation factor 2B from Homo sapiens with a H160D mutation in the beta subunit
Descriptor: Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, Translation initiation factor eIF-2B subunit delta, ...
Authors:Wang, L, Schoof, M, Lawrence, R, Boone, M, Frost, A, Walter, P.
Deposit date:2022-01-29
Release date:2022-04-27
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:A point mutation in the nucleotide exchange factor eIF2B constitutively activates the integrated stress response by allosteric modulation.
Elife, 11, 2022
7JK9
DownloadVisualize
BU of 7jk9 by Molmil
Helical filaments of plant light-dependent protochlorophyllide oxidoreductase (LPOR) bound to NADPH, Pchlide, and membrane
Descriptor: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Protochlorophyllide, ...
Authors:Nguyen, H.C, Gabruk, M, Frost, A.
Deposit date:2020-07-28
Release date:2021-03-17
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Photocatalytic LPOR forms helical lattices that shape membranes for chlorophyll synthesis.
Nat.Plants, 7, 2021
7KOD
DownloadVisualize
BU of 7kod by Molmil
Cryo-EM structure of heavy chain mouse apoferritin
Descriptor: Ferritin heavy chain
Authors:Sun, M, Azumaya, C, Tse, E, Frost, A, Southworth, D, Verba, K.A, Cheng, Y, Agard, D.A.
Deposit date:2020-11-08
Release date:2020-12-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (1.655 Å)
Cite:Practical considerations for using K3 cameras in CDS mode for high-resolution and high-throughput single particle cryo-EM.
J.Struct.Biol., 213, 2021
7KTX
DownloadVisualize
BU of 7ktx by Molmil
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to a Fab in DDM detergent
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ER membrane protein complex subunit 2, ...
Authors:Miller-Vedam, L.E, Schirle Oakdale, N.S, Braeuning, B, Boydston, E.A, Sevillano, N, Popova, K.D, Bonnar, J.L, Shurtleff, M.J, Prabu, J.R, Stroud, R.M, Craik, C.S, Schulman, B.A, Weissman, J.S, Frost, A.
Deposit date:2020-11-24
Release date:2020-12-02
Last modified:2020-12-09
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.
Elife, 9, 2020
7KRA
DownloadVisualize
BU of 7kra by Molmil
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to Fab-DH4 in lipid nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ER membrane protein complex subunit 2, ...
Authors:Miller-Vedam, L.E, Schirle Oakdale, N.S, Braeuning, B, Boydston, E.A, Sevillano, N, Popova, K.D, Bonnar, J.L, Shurtleff, M.J, Prabu, J.R, Stroud, R.M, Craik, C.S, Schulman, B.A, Weissman, J.S, Frost, A.
Deposit date:2020-11-19
Release date:2020-12-02
Last modified:2020-12-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.
Elife, 9, 2020
7L70
DownloadVisualize
BU of 7l70 by Molmil
The eukaryotic translation initiation factor 2B from Homo sapiens in its apo form
Descriptor: Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, Translation initiation factor eIF-2B subunit delta, ...
Authors:Wang, L, Schoof, M, Lawrence, R, Boone, M, Frost, A, Walter, P.
Deposit date:2020-12-24
Release date:2021-03-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:eIF2B conformation and assembly state regulates the integrated stress response.
Elife, 10, 2021
8CT1
DownloadVisualize
BU of 8ct1 by Molmil
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-adjacent state
Descriptor: Dynamin-like 120 kDa protein, mitochondrial
Authors:Du Pont, K.E, Aydin, H.
Deposit date:2022-05-13
Release date:2023-08-30
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural mechanism of mitochondrial membrane remodelling by human OPA1.
Nature, 620, 2023
8CT9
DownloadVisualize
BU of 8ct9 by Molmil
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-distal state
Descriptor: CARDIOLIPIN, Dynamin-like 120 kDa protein, mitochondrial
Authors:Du Pont, K.E, Aydin, H.
Deposit date:2022-05-13
Release date:2023-08-30
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Structural mechanism of mitochondrial membrane remodelling by human OPA1.
Nature, 620, 2023

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon