Author results

1I29
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CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE
Descriptor:CSDB, L-PROPARGYLGLYCINE, PYRIDOXAL-5'-PHOSPHATE
Authors:Mihara, H., Fujii, T., Kurihara, T., Hata, Y., Esaki, N.
Deposit date:2001-02-07
Release date:2003-07-01
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine.
J.BIOCHEM.(TOKYO), 131, 2002
1GC0
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CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA
Descriptor:METHIONINE GAMMA-LYASE
Authors:Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.
Deposit date:2000-07-06
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida
J.BIOCHEM.(TOKYO), 128, 2000
1GC2
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CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA
Descriptor:METHIONINE GAMMA-LYASE
Authors:Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.
Deposit date:2000-07-06
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida
J.BIOCHEM.(TOKYO), 128, 2000
1A0G
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L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE
Descriptor:D-AMINO ACID AMINOTRANSFERASE, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
Authors:Sugio, S., Kashima, A., Kishimoto, K., Peisach, D., Petsko, G.A., Ringe, D., Yoshimura, T., Esaki, N.
Deposit date:1997-11-30
Release date:1998-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of L201A mutant of D-amino acid aminotransferase at 2.0 A resolution: implication of the structural role of Leu201 in transamination.
Protein Eng., 11, 1998
1C0N
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CSDB PROTEIN, NIFS HOMOLOGUE
Descriptor:PROTEIN (CSDB PROTEIN), PYRIDOXAL-5'-PHOSPHATE, ACETIC ACID
Authors:Fujii, T., Maeda, M., Mihara, H., Kurihara, T., Esaki, N., Hata, Y.
Deposit date:1999-07-17
Release date:2000-07-17
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase
Biochemistry, 39, 2000
1JUD
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L-2-HALOACID DEHALOGENASE
Descriptor:L-2-HALOACID DEHALOGENASE
Authors:Hisano, T., Hata, Y., Fujii, T., Liu, J.-Q., Kurihara, T., Esaki, N., Soda, K.
Deposit date:1996-06-03
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.
J.Biol.Chem., 271, 1996
1QH9
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ENZYME-PRODUCT COMPLEX OF L-2-HALOACID DEHALOGENASE
Descriptor:2-HALOACID DEHALOGENASE, LACTIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Kurihara, T., Esaki, N.
Deposit date:1999-05-12
Release date:2000-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Structure of L-2-Haloacid Dehalogenase Complexed with a Reaction Product Reveals the Mechanism of Intermediate Hydrolysis in Dehalogenase
To be Published
2DAB
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L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'-PHOSPHATE
Descriptor:D-AMINO ACID AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Sugio, S., Kashima, A., Kishimoto, K., Peisach, D., Petsko, G.A., Ringe, D., Yoshimura, T., Esaki, N.
Deposit date:1997-11-30
Release date:1998-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of L201A mutant of D-amino acid aminotransferase at 2.0 A resolution: implication of the structural role of Leu201 in transamination.
Protein Eng., 11, 1998
1ET0
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CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE LYASE FROM ESCHERICHIA COLI
Descriptor:4-AMINO-4-DEOXYCHORISMATE LYASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Nakai, T., Mizutani, H., Miyahara, I., Hirotsu, K., Takeda, S., Jhee, K.H., Yoshimura, T., Esaki, N.
Deposit date:2000-04-12
Release date:2000-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of 4-amino-4-deoxychorismate lyase from Escherichia coli.
J.Biochem.(Tokyo), 128, 2000
1L6F
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ALANINE RACEMASE BOUND WITH N-(5'-PHOSPHOPYRIDOXYL)-L-ALANINE
Descriptor:alanine racemase, ALANYL-PYRIDOXAL-5'-PHOSPHATE
Authors:Watanabe, A., Yoshimura, T., Mikami, B., Hayashi, H., Kagamiyama, H., Esaki, N.
Deposit date:2002-03-09
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine.
J.Biol.Chem., 277, 2002
1L6G
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ALANINE RACEMASE BOUND WITH N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE
Descriptor:alanine racemase, N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE
Authors:Watanabe, A., Yoshimura, T., Mikami, B., Hayashi, H., Kagamiyama, H., Esaki, N.
Deposit date:2002-03-10
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine.
J.Biol.Chem., 277, 2002
1WTJ
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CRYSTAL STRUCTURE OF DELTA1-PIPERIDEINE-2-CARBOXYLATE REDUCTASE FROM PSEUDOMONAS SYRINGAE PVAR.TOMATO
Descriptor:ureidoglycolate dehydrogenase
Authors:Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.
Deposit date:2004-11-24
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction
J.Biol.Chem., 280, 2005
1ZRM
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CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE OF L-2-HALOACID DEHALOGENASE WITH 2-CHLORO-N-BUTYRATE
Descriptor:L-2-HALOACID DEHALOGENASE, BUTANOIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
1ZRN
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INTERMEDIATE STRUCTURE OF L-2-HALOACID DEHALOGENASE WITH MONOCHLOROACETATE
Descriptor:L-2-HALOACID DEHALOGENASE, ACETIC ACID
Authors:Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
2CWF
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CRYSTAL STRUCTURE OF DELTA1-PIPERIDEINE-2-CARBOXYLATE REDUCTASE FROM PSEUDOMONAS SYRINGAE COMPLEXED WITH NADPH
Descriptor:delta1-piperideine-2-carboxylate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.
Deposit date:2005-06-20
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction
J.Biol.Chem., 280, 2005
2CWH
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CRYSTAL STRUCTURE OF DELTA1-PIPERIDEINE-2-CARBOXYLATE REDUCTASE FROM PSEUDOMONAS SYRINGAE COMPLEXED WITH NADPH AND PYRROLE-2-CARBOXYLATE
Descriptor:delta1-piperideine-2-carboxylate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PYRROLE-2-CARBOXYLATE
Authors:Goto, M., Muramatsu, H., Mihara, H., Kurihara, T., Esaki, N., Omi, R., Miyahara, I., Hirotsu, K.
Deposit date:2005-06-20
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction
J.Biol.Chem., 280, 2005
3SMV
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X-RAY CRYSTAL STRUCTURE OF L-AZETIDINE-2-CARBOXYLATE HYDROLASE
Descriptor:S-(-)-azetidine-2-carboxylate hydrolase, GLYCEROL, IMIDAZOLE
Authors:Toyoda, M., Mikami, B., Jitsumori, K., Wackett, L.P., Esaki, N., Kurihara, T.
Deposit date:2011-06-28
Release date:2012-07-18
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystal structure of L-Azetidine-2-carboxylate hydrolase from Pseudomonas sp. strain A2C
To be Published
3WJ8
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CRYSTAL STRUCTURE OF DL-2-HALOACID DEHALOGENASE MUTANT WITH 2-BROMO-2-METHYLPROPIONATE
Descriptor:DL-2-haloacid dehalogenase, 2-bromo-2-methylpropanoic acid, GLYCEROL
Authors:Siwek, A., Omi, R., Hirotsu, K., Jitsumori, K., Esaki, N., Kurihara, T., Paneth, P.
Deposit date:2013-10-07
Release date:2013-11-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
Arch.Biochem.Biophys., 540, 2013
4N2X
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CRYSTAL STRUCTURE OF DL-2-HALOACID DEHALOGENASE
Descriptor:DL-2-haloacid dehalogenase, GLYCEROL
Authors:Siwek, A., Omi, R., Hirotsu, K., Jitsumori, K., Esaki, N., Kurihara, T., Paneth, P.
Deposit date:2013-10-06
Release date:2013-11-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
Arch.Biochem.Biophys., 540, 2013
1WTC
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CRYSTAL STRUCTURE OF S.POMBE SERINE RACEMASE COMPLEX WITH AMPPCP
Descriptor:Hypothetical protein C320.14 in chromosome III, MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Goto, M., Miyahara, I., Hirotsu, K.
Deposit date:2004-11-22
Release date:2005-11-01
Last modified:2014-05-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe
J.Biol.Chem., 284, 2009
2ZR8
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CRYSTAL STRUCTURE OF MODIFIED SERINE RACEMASE COMPLEXED WITH SERINE
Descriptor:Uncharacterized protein C320.14, N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE, SERINE, ...
Authors:Goto, M.
Deposit date:2008-08-25
Release date:2009-07-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe
J.Biol.Chem., 284, 2009
1WLY
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CRYSTAL STRUCTURE OF 2-HALOACRYLATE REDUCTASE
Descriptor:2-haloacrylate reductase
Authors:Omi, R.
Deposit date:2004-06-30
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of 2-Haloacrylate Reductase
To be Published
1Y37
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STRUCTURE OF FLUOROACETATE DEHALOGENASE FROM BURKHOLDERIA SP. FA1
Descriptor:Fluoroacetate Dehalogenase, MAGNESIUM ION
Authors:Omi, R.
Deposit date:2004-11-23
Release date:2006-02-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Fluoroacetate Dehalogenase FA1
To be Published
2O7C
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CRYSTAL STRUCTURE OF L-METHIONINE-LYASE FROM PSEUDOMONAS
Descriptor:Methionine gamma-lyase, SULFATE ION
Authors:Misaki, S., Takimoto, A., Takakura, T., Yoshioka, T., Yamashita, M., Tamura, T., Tanaka, H., Inagaki, K.
Deposit date:2006-12-10
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the antitumour enzyme L-methionine gamma-lyase from Pseudomonas putida at 1.8 A resolution
J.Biochem.(Tokyo), 141, 2007
2ZPU
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CRYSTAL STRUCTURE OF MODIFIED SERINE RACEMASE FROM S.POMBE.
Descriptor:Uncharacterized protein C320.14, MAGNESIUM ION, N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE
Authors:Goto, M.
Deposit date:2008-07-29
Release date:2009-04-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Serine racemase with catalytically active lysinoalanyl residue.
J.Biochem., 145, 2009
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