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6KXX
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BU of 6kxx by Molmil
Human PPAR alpha ligand binding domain in complex with a synthetic agonist (compound A)
Descriptor: 1-(4-chlorophenyl)-6-methyl-3-propan-2-yl-pyrazolo[3,4-b]pyridine-4-carboxylic acid, PGC1alpha, Peroxisome proliferator-activated receptor alpha
Authors:Yoshida, T, Tachibana, K, Oki, H, Doi, M, Fukuda, S, Yuzuriha, T, Tabata, R, Ishimoto, K, Kawahara, K, Ohkubo, T, Miyachi, H, Doi, T.
Deposit date:2019-09-14
Release date:2020-05-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Basis for PPAR alpha Activation by 1H-pyrazolo-[3,4-b]pyridine Derivatives.
Sci Rep, 10, 2020
6KXY
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BU of 6kxy by Molmil
Human PPAR alpha ligand binding domain in complex with a synthetic agonist (compound B)
Descriptor: 6-ethyl-1-(4-fluorophenyl)-3-pentan-3-yl-pyrazolo[3,4-b]pyridine-4-carboxylic acid, PGC1alpha, Peroxisome proliferator-activated receptor alpha
Authors:Yoshida, T, Tachibana, K, Oki, H, Doi, M, Fukuda, S, Yuzuriha, T, Tabata, R, Ishimoto, K, Kawahara, K, Ohkubo, T, Miyachi, H, Doi, T.
Deposit date:2019-09-14
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for PPAR alpha Activation by 1H-pyrazolo-[3,4-b]pyridine Derivatives.
Sci Rep, 10, 2020
5GLH
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BU of 5glh by Molmil
Human endothelin receptor type-B in complex with ET-1
Descriptor: Endothelin Receptor Subtype-B, Peptide from Endothelin-1
Authors:Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T.
Deposit date:2016-07-11
Release date:2016-09-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
5GLI
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BU of 5gli by Molmil
Human endothelin receptor type-B in the ligand-free form
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Endothelin Receptor Subtype-B, OLEIC ACID, ...
Authors:Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T.
Deposit date:2016-07-11
Release date:2016-09-07
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
3KDO
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BU of 3kdo by Molmil
Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDN
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BU of 3kdn by Molmil
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A12
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BU of 3a12 by Molmil
Crystal structure of Type III Rubisco complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A13
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BU of 3a13 by Molmil
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structure-based optimization of a Type III Rubisco from a hyperthermophile
To be Published
5X93
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BU of 5x93 by Molmil
Human endothelin receptor type-B in complex with antagonist K-8794
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3-[6-[(4-tert-butylphenyl)sulfonylamino]-5-(2-methoxyphenoxy)-2-pyrimidin-2-yl-pyrimidin-4-yl]oxy-N-(2,6-dimethylphenyl)propanamide, CHOLESTEROL, ...
Authors:Shihoya, W, Nishizawa, T, Yamashita, K, Hirata, K, Okuta, A, Tani, K, Fujiyoshi, Y, Doi, T, Nureki, O.
Deposit date:2017-03-05
Release date:2017-08-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structures of endothelin ETB receptor bound to clinical antagonist bosentan and its analog
Nat. Struct. Mol. Biol., 24, 2017
5XPR
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BU of 5xpr by Molmil
Human endothelin receptor type-B in complex with antagonist bosentan
Descriptor: 4-tert-butyl-N-[6-(2-hydroxyethyloxy)-5-(2-methoxyphenoxy)-2-pyrimidin-2-yl-pyrimidin-4-yl]benzenesulfonamide, Endothelin B receptor,Endolysin,Endothelin B receptor, SULFATE ION
Authors:Shihoya, W, Nishizawa, T, Yamashita, K, Hirata, K, Okuta, A, Tani, K, Fujiyoshi, Y, Doi, T, Nureki, O.
Deposit date:2017-06-04
Release date:2017-08-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:X-ray structures of endothelin ETB receptor bound to clinical antagonist bosentan and its analog
Nat. Struct. Mol. Biol., 24, 2017
1ENI
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BU of 1eni by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENK
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BU of 1enk by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENJ
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BU of 1enj by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
3A6T
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BU of 3a6t by Molmil
Crystal structure of MutT-8-OXO-DGMP complex
Descriptor: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, Mutator mutT protein, SODIUM ION, ...
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6U
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BU of 3a6u by Molmil
Crystal structure of MutT-8-OXO-dGMP-MN(II) complex
Descriptor: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Mutator mutT protein, ...
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6S
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BU of 3a6s by Molmil
Crystal structure of the MutT protein
Descriptor: L(+)-TARTARIC ACID, Mutator mutT protein, SODIUM ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
1VAS
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BU of 1vas by Molmil
ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION
Descriptor: DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3'), PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1))
Authors:Vassylyev, D.G, Kashiwagi, T, Mikami, Y, Ariyoshi, M, Iwai, S, Ohtsuka, E, Morikawa, K.
Deposit date:1995-09-08
Release date:1996-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition.
Cell(Cambridge,Mass.), 83, 1995
3A6V
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BU of 3a6v by Molmil
Crystal structure of the MutT protein in MN(II) bound holo form
Descriptor: L(+)-TARTARIC ACID, MANGANESE (II) ION, Mutator mutT protein, ...
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
1I2H
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BU of 1i2h by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PSD-ZIP45(HOMER1C/VESL-1L)CONSERVED HOMER 1 DOMAIN
Descriptor: PSD-ZIP45(HOMER-1C/VESL-1L)
Authors:Irie, K, Nakatsu, T, Mitsuoka, K, Fujiyoshi, Y, Kato, H.
Deposit date:2001-02-09
Release date:2002-05-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Homer 1 Family Conserved Region Reveals the Interaction Between the EVH1 Domain and Own Proline-rich Motif
J.Mol.Biol., 318, 2002
5XSZ
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BU of 5xsz by Molmil
Crystal structure of zebrafish lysophosphatidic acid receptor LPA6
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Lysophosphatidic acid receptor 6a,Endolysin,Lysophosphatidic acid receptor 6a
Authors:Taniguchi, R, Nishizawa, T, Ishitani, R, Nureki, O.
Deposit date:2017-06-16
Release date:2017-08-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA6
Nature, 548, 2017
2END
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BU of 2end by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995

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