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1SK5
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THE ULTRA-HIGH RESOLUTION STRUCTURE OF D(CTTTTAAAAG)2: MODULATION OF BENDING BY T-A STEPS AND ITS ROLE IN DNA RECOGNITION
Descriptor:5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION
Authors:Han, G.W., Langs, D., Kopka, M.L., Dickerson, R.E.
Deposit date:2004-03-04
Release date:2005-06-21
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
To be Published
1EN3
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1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K., Dickerson, R.E.
Deposit date:2000-03-20
Release date:2000-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1EN8
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1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), CALCIUM ION, ETHANOL
Authors:Chiu, T.K., Dickerson, R.E.
Deposit date:2000-03-20
Release date:2000-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1EN9
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1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.
Descriptor:DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K., Dickerson, R.E.
Deposit date:2000-03-20
Release date:2000-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1ENE
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1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.
Descriptor:DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), CALCIUM ION, ETHANOL
Authors:Chiu, T.K., Dickerson, R.E.
Deposit date:2000-03-21
Release date:2000-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1PJO
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CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID OF HIV-1 PPT
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', MAGNESIUM ION
Authors:Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
Deposit date:2003-06-03
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H
J.Mol.Biol., 334, 2003
1G4Q
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RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', CALCIUM ION, ...
Authors:Han, G.W.
Deposit date:2000-10-27
Release date:2003-07-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Direct-methods determination of an RNA/DNA hybrid decamer at 1.15 A resolution.
Acta Crystallogr.,Sect.D, 57, 2001
1PJG
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RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
Descriptor:5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', CALCIUM ION
Authors:Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.-L., Dickerson, R.E.
Deposit date:2003-06-02
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
J.Mol.Biol., 334, 2003
1D61
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THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), CACODYLATE ION, CALCIUM ION
Authors:Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.
Deposit date:1992-02-26
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1DC0
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CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3')
Authors:Ng, H.L., Kopka, M.L., Dickerson, R.E.
Deposit date:1999-11-03
Release date:2000-03-06
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structure of a stable intermediate in the A ;-> B DNA helix transition
Proc.Natl.Acad.Sci.USA, 97, 2000
3DNB
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HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
Descriptor:DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G., Dickerson, R.E.
Deposit date:1988-03-18
Release date:1989-01-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
5PTP
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STRUCTURE OF HYDROLASE (SERINE PROTEINASE)
Descriptor:BETA TRYPSIN, CALCIUM ION
Authors:Stroud, R.M., Finer-Moore, J.
Deposit date:1997-03-31
Release date:1997-07-07
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Solvent structure in crystals of trypsin determined by X-ray and neutron diffraction.
Proteins, 12, 1992
5DNB
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STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G., Yanagi, K., Dickerson, R.E.
Deposit date:1990-03-22
Release date:1991-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
455D
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A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, DITHIOBIS-(PROPANE)
Authors:Chiu, T.K., Kaczor-Grzeskowiak, M., Dickerson, R.E.
Deposit date:1999-03-04
Release date:1999-10-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
J.Mol.Biol., 292, 1999
1BTY
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CRYSTAL STRUCTURE OF BETA-TRYPSIN IN COMPLEX WITH BENZAMIDINE
Descriptor:BETA-TRYPSIN, CALCIUM ION, BENZAMIDINE
Authors:Stroud, R.M., Katz, B.A., Finer-Moore, J.
Deposit date:1995-05-17
Release date:1995-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Episelection: novel Ki approximately nanomolar inhibitors of serine proteases selected by binding or chemistry on an enzyme surface.
Biochemistry, 34, 1995
1D23
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THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS
Descriptor:DNA (5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3'), MAGNESIUM ION
Authors:Grzeskowiak, K., Yanagi, K., Prive, G.G., Dickerson, R.E.
Deposit date:1991-05-29
Release date:1991-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals.
J.Biol.Chem., 266, 1991
1D49
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THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G
Descriptor:DNA (5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3'), MAGNESIUM ION
Authors:Quintana, J.R., Grzeskowiak, K., Yanagi, K., Dickerson, R.E.
Deposit date:1991-09-17
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G.
J.Mol.Biol., 225, 1992
1JES
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CRYSTAL STRUCTURE OF A COPPER-MEDIATED BASE PAIR IN DNA
Descriptor:5'-D(*CP*GP*CP*GP*(DPY)P*AP*TP*(DRP)P*CP*GP*CP*G)-3', COPPER (II) ION
Authors:Atwell, S., Meggers, E., Spraggon, G., Schultz, P.G.
Deposit date:2001-06-18
Release date:2001-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of a Copper-Mediated Base Pair in DNA
J.Am.Chem.Soc., 123, 2001
1ZNA
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CONFORMATION AND DYNAMICS IN A Z-DNA TETRAMER
Descriptor:DNA (5'-D(*CP*GP*CP*G)-3')
Authors:Drew, H.R., Dickerson, R.E.
Deposit date:1981-01-26
Release date:1981-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conformation and dynamics in a Z-DNA tetramer.
J.Mol.Biol., 152, 1981
5CYT
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REFINEMENT OF MYOGLOBIN AND CYTOCHROME C
Descriptor:CYTOCHROME C, PROTOPORPHYRIN IX CONTAINING FE
Authors:Takano, T.
Deposit date:1988-01-14
Release date:1989-07-12
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Refinement of Myoglobin and Cytochrome C
Methods and Applications in Crystallographic Computing, 1984
1IKK
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INTRINSIC BENDING AND DEFORMABILITY AT THE T-A STEP OF CCTTTAAAGG: A COMPARATIVE ANALYSIS OF T-A AND A-T STEPS WITHIN A-TRACTS
Descriptor:5'-D(*CP*CP*TP*TP*TP*AP*AP*AP*GP*G)-3', MAGNESIUM ION
Authors:Mack, D.R., Chiu, T.K., Dickerson, R.E.
Deposit date:2001-05-03
Release date:2001-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts.
J.Mol.Biol., 312, 2001
351C
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STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
Descriptor:CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Matsuura, Y., Takano, T., Dickerson, R.E.
Deposit date:1981-07-20
Release date:1981-10-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982
3BSE
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CRYSTAL STRUCTURE ANALYSIS OF A 16-BASE-PAIR B-DNA
Descriptor:DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3'), CALCIUM ION
Authors:Narayana, N.
Deposit date:2007-12-23
Release date:2008-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic Analysis of a Sex-Specific Enhancer Element: Sequence-Dependent DNA Structure, Hydration, and Dynamics
J.Mol.Biol., 385, 2009
3SSF
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CRYSTAL STRUCTURE OF RNA:DNA DODECAMER CORRESPONDING TO HIV-1 POLYPURINE TRACT, AT 1.6 A RESOLUTION.
Descriptor:5'-R(*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*GP*G)-3', 5'-D(*CP*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*A)-3', MAGNESIUM ION
Authors:Drozdzal, P., Michalska, K., Kierzek, R., Lomozik, L., Jaskolski, M.
Deposit date:2011-07-08
Release date:2012-02-08
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of an RNA/DNA dodecamer corresponding to the HIV-1 polypurine tract at 1.6 Angstrom resolution
Acta Crystallogr.,Sect.D, 68, 2012
451C
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STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
Descriptor:CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Matsuura, Y., Takano, T., Dickerson, R.E.
Deposit date:1981-07-20
Release date:1981-10-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982