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4LAD
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BU of 4lad by Molmil
Crystal Structure of the Ube2g2:RING-G2BR complex
Descriptor: E3 ubiquitin-protein ligase AMFR, OXALATE ION, Ubiquitin-conjugating enzyme E2 G2, ...
Authors:Liang, Y.-H, Li, J, Das, R, Byrd, R.A, Ji, X.
Deposit date:2013-06-19
Release date:2013-08-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J., 32, 2013
3H8K
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BU of 3h8k by Molmil
Crystal structure of Ube2g2 complxed with the G2BR domain of gp78 at 1.8-A resolution
Descriptor: Autocrine motility factor receptor, isoform 2, Ubiquitin-conjugating enzyme E2 G2
Authors:Kalathur, R.C, Das, R, Li, J, Byrd, R.A, Ji, X.
Deposit date:2009-04-29
Release date:2009-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78.
Mol.Cell, 34, 2009
1GA3
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BU of 1ga3 by Molmil
NMR STRUCTURE OF INTERLEUKIN-13
Descriptor: Interleukin-13
Authors:Eisenmesser, E.Z, Horita, D.A, Altieri, A.S, Byrd, R.A.
Deposit date:2000-11-29
Release date:2001-07-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of interleukin-13 and insights into receptor engagement
J.Mol.Biol., 310, 2001
1NK1
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BU of 1nk1 by Molmil
NK1 FRAGMENT OF HUMAN HEPATOCYTE GROWTH FACTOR/SCATTER FACTOR (HGF/SF) AT 2.5 ANGSTROM RESOLUTION
Descriptor: PROTEIN (HEPATOCYTE GROWTH FACTOR PRECURSOR)
Authors:Chirgadze, D.Y, Hepple, J.P, Zhou, H, Byrd, R.A, Blundell, T.L, Gherardi, E.
Deposit date:1998-08-20
Release date:1999-01-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the NK1 fragment of HGF/SF suggests a novel mode for growth factor dimerization and receptor binding.
Nat.Struct.Biol., 6, 1999
5HCK
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BU of 5hck by Molmil
HUMAN HCK SH3 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: HEMATOPOIETIC CELL KINASE
Authors:Horita, D.A, Baldisseri, D.M, Zhang, W, Altieri, A.S, Smithgall, T.E, Gmeiner, W.H, Byrd, R.A.
Deposit date:1998-03-09
Release date:1998-06-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the human Hck SH3 domain and identification of its ligand binding site.
J.Mol.Biol., 278, 1998
4HCK
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BU of 4hck by Molmil
HUMAN HCK SH3 DOMAIN, NMR, 25 STRUCTURES
Descriptor: HEMATOPOIETIC CELL KINASE
Authors:Horita, D.A, Baldisseri, D.M, Zhang, W, Altieri, A.S, Smithgall, T.E, Gmeiner, W.H, Byrd, R.A.
Deposit date:1998-03-09
Release date:1998-06-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the human Hck SH3 domain and identification of its ligand binding site.
J.Mol.Biol., 278, 1998
1KBE
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BU of 1kbe by Molmil
Solution structure of the cysteine-rich C1 domain of Kinase Suppressor of Ras
Descriptor: Kinase Suppressor of Ras, ZINC ION
Authors:Zhou, M, Horita, D.A, Waugh, D.S, Byrd, R.A, Morrison, D.K.
Deposit date:2001-11-06
Release date:2002-01-23
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and functional analysis of the cysteine-rich C1 domain of kinase suppressor of Ras (KSR).
J.Mol.Biol., 315, 2002
1KBF
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BU of 1kbf by Molmil
Solution Structure of the Cysteine-Rich C1 Domain of Kinase Suppressor of Ras
Descriptor: Kinase suppressor of Ras 1, ZINC ION
Authors:Zhou, M, Horita, D.A, Waugh, D.S, Byrd, R.A, Morrison, D.K.
Deposit date:2001-11-06
Release date:2002-01-23
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Solution structure and functional analysis of the cysteine-rich C1 domain of kinase suppressor of Ras (KSR).
J.Mol.Biol., 315, 2002
2HGF
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BU of 2hgf by Molmil
HAIRPIN LOOP CONTAINING DOMAIN OF HEPATOCYTE GROWTH FACTOR, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: HEPATOCYTE GROWTH FACTOR
Authors:Zhou, H, Mazzulla, M.J, Kaufman, J.D, Stahl, S.J, Wingfield, P.T, Rubin, J.S, Bottaro, D.P, Byrd, R.A.
Deposit date:1997-12-18
Release date:1998-06-24
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The solution structure of the N-terminal domain of hepatocyte growth factor reveals a potential heparin-binding site.
Structure, 6, 1998
2JMV
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BU of 2jmv by Molmil
Solution structure of scytovirin refined against residual dipolar couplings
Descriptor: Scytovirin
Authors:McFeeters, R.L, Byrd, R.A.
Deposit date:2006-12-07
Release date:2007-06-12
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:The novel fold of scytovirin reveals a new twist for antiviral entry inhibitors
J.Mol.Biol., 369, 2007
2JR0
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BU of 2jr0 by Molmil
Solution structure of NusB from Aquifex Aeolicus
Descriptor: N utilization substance protein B homolog
Authors:Das, R, Loss, S, Li, J, Tarasov, S, Wingfield, P, Waugh, D.S, Byrd, R.A, Altieri, A.S.
Deposit date:2007-06-18
Release date:2008-02-19
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Structural biophysics of the NusB:NusE antitermination complex.
J.Mol.Biol., 376, 2008
2LVP
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BU of 2lvp by Molmil
gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin
Descriptor: E3 ubiquitin-protein ligase AMFR, Ubiquitin
Authors:Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
Deposit date:2012-07-09
Release date:2012-11-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
2LVN
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BU of 2lvn by Molmil
Structure of the gp78 CUE domain
Descriptor: E3 ubiquitin-protein ligase AMFR
Authors:Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
Deposit date:2012-07-09
Release date:2012-11-21
Last modified:2012-12-26
Method:SOLUTION NMR
Cite:Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
2LVQ
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BU of 2lvq by Molmil
gp78CUE domain bound to the proximal ubiquitin of K48-linked diubiquitin
Descriptor: E3 ubiquitin-protein ligase AMFR, Ubiquitin
Authors:Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
Deposit date:2012-07-09
Release date:2012-11-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
2LVO
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BU of 2lvo by Molmil
Structure of the gp78CUE domain bound to monubiquitin
Descriptor: E3 ubiquitin-protein ligase AMFR, Ubiquitin
Authors:Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
Deposit date:2012-07-09
Release date:2012-11-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
1DXA
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BU of 1dxa by Molmil
BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA (5'-D(*CP*TP*CP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*AP*CP*GP*AP*G)-3')
Authors:Yeh, H.J.C, Sayer, J.M, Liu, X, Altieri, A.S, Byrd, R.A, Lakshman, M.K, Yagi, H, Schurter, E.J, Gorenstein, D.G, Jerina, D.M.
Deposit date:1995-09-01
Release date:1995-12-07
Last modified:2024-03-13
Method:SOLUTION NMR
Cite:NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: an unusual syn glycosidic torsion angle at the modified dA
Biochemistry, 34, 1995
1EY1
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BU of 1ey1 by Molmil
SOLUTION STRUCTURE OF ESCHERICHIA COLI NUSB
Descriptor: ANTITERMINATION FACTOR NUSB
Authors:Altieri, A.S, Mazzulla, M.J, Horita, D.A, Coats, R.H, Wingfield, P.T, Byrd, R.A.
Deposit date:2000-05-05
Release date:2000-06-14
Last modified:2022-06-15
Method:SOLUTION NMR
Cite:The structure of the transcriptional antiterminator NusB from Escherichia coli.
Nat.Struct.Biol., 7, 2000
1G6Z
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BU of 1g6z by Molmil
SOLUTION STRUCTURE OF THE CLR4 CHROMO DOMAIN
Descriptor: CLR4 PROTEIN
Authors:Horita, D.A, Ivanova, A.V, Altieri, A.S, Klar, A.J, Byrd, R.A.
Deposit date:2000-11-08
Release date:2001-04-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure, domain features, and structural implications of mutants of the chromo domain from the fission yeast histone methyltransferase Clr4.
J.Mol.Biol., 307, 2001
7LEW
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BU of 7lew by Molmil
Crystal structure of UBE2G2 in complex with the UBE2G2-binding region of AUP1
Descriptor: Lipid droplet-regulating VLDL assembly factor AUP1, Ubiquitin-conjugating enzyme E2 G2
Authors:Liang, Y.-H, Smith, C.E, Tsai, Y.C, Weissman, A.M, Ji, X.
Deposit date:2021-01-15
Release date:2021-11-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.736 Å)
Cite:A structurally conserved site in AUP1 binds the E2 enzyme UBE2G2 and is essential for ER-associated degradation.
Plos Biol., 19, 2021
4EYA
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BU of 4eya by Molmil
Crystal Structure of a Plectonemic RNA Supercoil
Descriptor: GLYCEROL, N utilization substance protein B homolog, RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'), ...
Authors:Stagno, J.R, Ji, X.
Deposit date:2012-05-01
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a plectonemic RNA supercoil.
Nat Commun, 3, 2012
3R2D
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BU of 3r2d by Molmil
Crystal Structure of Antitermination Factors NusB and NusE in complex with dsRNA
Descriptor: 30S ribosomal protein S10, 5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3', DI(HYDROXYETHYL)ETHER, ...
Authors:Stagno, J.R, Ji, X.
Deposit date:2011-03-14
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.
Nucleic Acids Res., 39, 2011
3R2C
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BU of 3r2c by Molmil
Crystal Structure of Antitermination Factors NusB and NusE in complex with BoxA RNA
Descriptor: 30S ribosomal protein S10, 5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3', ACETATE ION, ...
Authors:Stagno, J.R, Ji, X.
Deposit date:2011-03-14
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.
Nucleic Acids Res., 39, 2011
2LXP
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BU of 2lxp by Molmil
NMR structure of two domains in ubiquitin ligase gp78, RING and G2BR, bound to its conjugating enzyme Ube2g
Descriptor: E3 ubiquitin-protein ligase AMFR, Ubiquitin-conjugating enzyme E2 G2, ZINC ION
Authors:Das, R, Linag, Y, Mariano, J, Li, J, Huang, T, King, A, Weissman, A, Ji, X, Byrd, R.
Deposit date:2012-08-30
Release date:2013-08-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J., 32, 2013
2MI8
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BU of 2mi8 by Molmil
Solution structure of lysine-free (K0) ubiquitin
Descriptor: Ubiquitin
Authors:Huang, T, Li, J.R, Byrd, A.R.
Deposit date:2013-12-09
Release date:2014-04-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of lysine-free (K0) ubiquitin.
Protein Sci., 23, 2014
2LXH
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BU of 2lxh by Molmil
NMR structure of the RING domain in ubiquitin ligase gp78
Descriptor: E3 ubiquitin-protein ligase AMFR, ZINC ION
Authors:Das, R, Linag, Y, Mariano, J, Li, J, Huang, T, King, A, Weissman, A, Ji, X, Byrd, R.
Deposit date:2012-08-27
Release date:2013-08-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J., 32, 2013

 

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