Author results

6QM2
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NLAIV RESTRICTION ENDONUCLEASE
Descriptor:Type-2 restriction enzyme NlaIV, SODIUM ION, POTASSIUM ION
Authors:Czapinska, H., Siwek, W., Szczepanowski, R.H., Bujnicki, J.M., Bochtler, M., Skowronek, K.
Deposit date:2019-02-01
Release date:2019-05-01
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure and Directed Evolution of Specificity of NlaIV Restriction Endonuclease.
J.Mol.Biol., 431, 2019
6IA2
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CRYSTAL STRUCTURE OF A SELF-COMPLEMENTARY RNA DUPLEX RECOGNIZED BY COM
Descriptor:RNA (5'-R(*AP*GP*AP*GP*AP*AP*CP*CP*CP*GP*GP*AP*GP*UP*UP*CP*CP*CP*U)-3'), CHLORIDE ION, SULFATE ION
Authors:Nowacka, M., Fernandes, H., Kiliszek, A., Bernat, A., Lach, G., Bujnicki, J.M.
Deposit date:2018-11-26
Release date:2019-03-27
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com.
Plos One, 14, 2019
6G6S
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CRYSTAL STRUCTURE OF HUMAN ACINUS RNA RECOGNITION MOTIF DOMAIN
Descriptor:Apoptotic chromatin condensation inducer in the nucleus
Authors:Fernandes, H., Czapinska, H., Grudziaz, K., Bujnicki, J.M., Nowacka, M.
Deposit date:2018-04-03
Release date:2018-06-27
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of human Acinus RNA recognition motif domain.
PeerJ, 6, 2018
6FQL
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CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS IN COMPLEX WITH MAB-10 3'UTR 13MER RNA
Descriptor:E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*UP*GP*CP*AP*UP*UP*UP*AP*AP*UP*GP*CP*A)-3'), CHLORIDE ION
Authors:Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.
Deposit date:2018-02-14
Release date:2018-05-09
Method:X-RAY DIFFRACTION (2.349 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
6FQ3
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CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS IN COMPLEX WITH LIN-29A 5'UTR 13MER RNA
Descriptor:E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3'), CHLORIDE ION
Authors:Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.
Deposit date:2018-02-13
Release date:2018-05-09
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
6FPT
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CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS
Descriptor:E3 ubiquitin-protein ligase TRIM71
Authors:Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.
Deposit date:2018-02-12
Release date:2018-05-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
5A7Y
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CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRM10 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE
Descriptor:TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE, DI(HYDROXYETHYL)ETHER, ...
Authors:Van Laer, B., Roovers, M., Wauters, L., Kasprzak, J., Dyzma, M., Deyaert, E., Feller, A., Bujnicki, J., Droogmans, L., Versees, W.
Deposit date:2015-07-10
Release date:2016-01-13
Last modified:2016-02-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
Nucleic Acids Res., 44, 2016
5A7Z
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CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRM10 AT 2.1 ANGSTROM RESOLUTION.
Descriptor:TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE
Authors:Van Laer, B., Roovers, M., Wauters, L., Kasprzak, J., Dyzma, M., Deyaert, E., Feller, A., Bujnicki, J., Droogmans, L., Versees, W.
Deposit date:2015-07-10
Release date:2016-01-13
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
Nucleic Acids Res., 44, 2016
5A7T
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CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRM10 AT 2.4 ANGSTROM RESOLUTION.
Descriptor:TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE, DI(HYDROXYETHYL)ETHER
Authors:Van Laer, B., Roovers, M., Wauters, L., Kasprzak, J., Dyzma, M., Deyaert, E., Feller, A., Bujnicki, J., Droogmans, L., Versees, W.
Deposit date:2015-07-09
Release date:2016-01-13
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
Nucleic Acids Res., 44, 2016
4YHU
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YEAST PRP3 C-TERMINAL FRAGMENT 296-469
Descriptor:U4/U6 small nuclear ribonucleoprotein PRP3, YTTRIUM (III) ION
Authors:Liu, S., Wahl, M.C.
Deposit date:2015-02-27
Release date:2015-07-22
Last modified:2015-09-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing.
Elife, 4, 2015
4YHV
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YEAST PRP3 C-TERMINAL FRAGMENT 325-469
Descriptor:U4/U6 small nuclear ribonucleoprotein PRP3, ACETIC ACID
Authors:Liu, S., Wahl, M.C.
Deposit date:2015-02-27
Release date:2015-07-22
Last modified:2015-09-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing.
Elife, 4, 2015
4YHW
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YEAST PRP3 (296-469) IN COMPLEX WITH FRAGMENT OF U4/U6 DI-SNRNA
Descriptor:U4/U6 small nuclear ribonucleoprotein PRP3, U4 snRNA fragment, U6 snRNA fragment
Authors:Liu, S., Wahl, M.C.
Deposit date:2015-02-27
Release date:2015-07-22
Last modified:2015-09-30
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing.
Elife, 4, 2015
4QPT
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STRUCTURAL INVESTIGATION OF HNRNP L
Descriptor:Heterogenous nuclear ribonucleoprotein L, PHOSPHATE ION
Authors:Blatter, M., Allain, F.H.-T.
Deposit date:2014-06-25
Release date:2015-05-20
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (1.351 Å)
Cite:The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein.
J.Mol.Biol., 427, 2015
2MQL
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STRUCTURAL INVESTIGATION OF HNRNP L
Descriptor:Protein Hnrnpl
Authors:Blatter, M., Allain, F.
Deposit date:2014-06-24
Release date:2015-05-06
Last modified:2017-11-15
Method:SOLUTION NMR
Cite:The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein.
J.Mol.Biol., 427, 2015
2MQM
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STRUCTURAL INVESTIGATION OF HNRNP L
Descriptor:Protein Hnrnpl
Authors:Blatter, M., Allain, F.
Deposit date:2014-06-24
Release date:2015-05-06
Last modified:2017-11-15
Method:SOLUTION NMR
Cite:The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein.
J.Mol.Biol., 427, 2015
2MQN
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STRUCTURAL INVESTIGATION OF HNRNP L
Descriptor:Heterogenous nuclear ribonucleoprotein L
Authors:Blatter, M., Allain, F.
Deposit date:2014-06-24
Release date:2015-05-06
Last modified:2017-11-15
Method:SOLUTION NMR
Cite:The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein.
J.Mol.Biol., 427, 2015
4OUN
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CRYSTAL STRUCTURE OF MINI-RIBONUCLEASE 3 FROM BACILLUS SUBTILIS
Descriptor:Mini-ribonuclease 3
Authors:Chojnowski, G., Czarnecka, J., Nowak, E., Pianka, D., Glow, D., Sabala, I., Skowronek, K., Nowotny, M., Bujnicki, J.M.
Deposit date:2014-02-18
Release date:2015-02-04
Last modified:2015-07-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sequence-specific cleavage of dsRNA by Mini-III RNase
Nucleic Acids Res., 43, 2015
4N48
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CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1 PROTEIN IN COMPLEX WITH CAPPED RNA FRAGMENT
Descriptor:Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, capped RNA, S-ADENOSYLMETHIONINE, ...
Authors:Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
Deposit date:2013-10-08
Release date:2014-01-22
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.704 Å)
Cite:Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.
Nat Commun, 5, 2014
4N49
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CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1 PROTEIN IN COMPLEX WITH M7GPPPG AND SAM
Descriptor:Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, S-ADENOSYLMETHIONINE, 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
Deposit date:2013-10-08
Release date:2014-01-22
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.
Nat Commun, 5, 2014
4N4A
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CYSTAL STRUCTURE OF CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1
Descriptor:Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
Authors:Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
Deposit date:2013-10-08
Release date:2014-01-22
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.
Nat Commun, 5, 2014
4KYW
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RESTRICTION ENDONUCLEASE DPNI IN COMPLEX WITH TWO DNA MOLECULES
Descriptor:Type-2 restriction enzyme DpnI, 5'-(*DC*DTP*DGP*DGP*6MAP*DTP*DCP*DCP*DAP*DG)-3', ZINC ION, ...
Authors:Mierzejewska, K., Siwek, W., Czapinska, H., Skowronek, K., Bujnicki, J.M., Bochtler, M.
Deposit date:2013-05-29
Release date:2014-06-04
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of the methylation specificity of R.DpnI.
Nucleic Acids Res., 42, 2014
4HKQ
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XMRV REVERSE TRANSCRIPTASE IN COMPLEX WITH RNA/DNA HYBRID
Descriptor:Reverse transcriptase/ribonuclease H p80, RNA (5'-R(*AP*AP*CP*AP*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*CP*AP*U)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*TP*CP*A*GP*GP*TP*GP*TP*CP*GP*CP*AP*CP*TP*CP*TP*G)-3')
Authors:Nowak, E., Potrzebowski, W., Konarev, P.V., Rausch, J.W., Bona, M.K., Svergun, D.I., Bujnicki, J.M., Le Grice, S.F.J., Nowotny, M.
Deposit date:2012-10-15
Release date:2013-02-20
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid
Nucleic Acids Res., 41, 2013
4ESJ
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RESTRICTION ENDONUCLEASE DPNI IN COMPLEX WITH TARGET DNA
Descriptor:Type-2 restriction enzyme DpnI, DNA (5'-D(*CP*TP*GP*GP*(6MA)P*TP*CP*CP*AP*G)-3'), ZINC ION, ...
Authors:Siwek, W., Czapinska, H., Bochtler, M., Bujnicki, J.M., Skowronek, K.
Deposit date:2012-04-23
Release date:2012-06-13
Last modified:2012-10-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.
Nucleic Acids Res., 40, 2012
3TM4
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CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH S-ADENOSYLMETHIONINE
Descriptor:tRNA (guanine N2-)-methyltransferase Trm14, S-ADENOSYLMETHIONINE
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
3TM5
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CRYSTAL STRUCTURE OF TRM14 FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH SINEFUNGIN
Descriptor:Crystal structure of Trm14, SINEFUNGIN
Authors:Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.
Deposit date:2011-08-31
Release date:2012-03-14
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.
Nucleic Acids Res., 40, 2012
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