Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3UE4
DownloadVisualize
BU of 3ue4 by Molmil
Structural and spectroscopic analysis of the kinase inhibitor bosutinib binding to the Abl tyrosine kinase domain
Descriptor: 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile, Tyrosine-protein kinase ABL1
Authors:Boxer, S.G, Levinson, N.M.
Deposit date:2011-10-28
Release date:2012-04-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.424 Å)
Cite:Structural and spectroscopic analysis of the kinase inhibitor bosutinib and an isomer of bosutinib binding to the abl tyrosine kinase domain.
Plos One, 7, 2012
7MHA
DownloadVisualize
BU of 7mha by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; W252V mutant
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Boxer, S.G, Mathews, I.I, Weaver, J.B.
Deposit date:2021-04-14
Release date:2022-04-27
Last modified:2022-11-16
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Photosynthetic reaction center variants made via genetic code expansion indicate tyrosine at M210 tunes the mechanism for primary electron transfer
Thesis Ph.D. Stanford University, 2022
7U6Q
DownloadVisualize
BU of 7u6q by Molmil
TEM-1 beta-lactamase
Descriptor: Beta-lactamase, SULFATE ION
Authors:Ji, Z, Boxer, S.G, Mathews, I.I.
Deposit date:2022-03-04
Release date:2022-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of beta-Lactamases.
J.Am.Chem.Soc., 144, 2022
7U9N
DownloadVisualize
BU of 7u9n by Molmil
S48A Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, CYCLOHEXYLFORMAMIDE, ...
Authors:Zheng, C, Boxer, S.G.
Deposit date:2022-03-11
Release date:2023-02-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Enhanced active-site electric field accelerates enzyme catalysis.
Nat.Chem., 15, 2023
7UTW
DownloadVisualize
BU of 7utw by Molmil
Cd-substituted Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, CADMIUM ION, ...
Authors:Zheng, C, Boxer, S.G.
Deposit date:2022-04-27
Release date:2023-02-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Enhanced active-site electric field accelerates enzyme catalysis.
Nat.Chem., 15, 2023
7UQ9
DownloadVisualize
BU of 7uq9 by Molmil
S48T Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, CYCLOHEXYLFORMAMIDE, ...
Authors:Zheng, C, Boxer, S.G.
Deposit date:2022-04-19
Release date:2023-02-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enhanced active-site electric field accelerates enzyme catalysis.
Nat.Chem., 15, 2023
8VTO
DownloadVisualize
BU of 8vto by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methylphenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methylphenylalanine
To Be Published
8VTL
DownloadVisualize
BU of 8vtl by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methoxyphenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methoxyphenylalanine
To Be Published
8VTM
DownloadVisualize
BU of 8vtm by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-bromophenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-bromophenylalanine
To Be Published
8VTK
DownloadVisualize
BU of 8vtk by Molmil
Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine
To Be Published
8VTJ
DownloadVisualize
BU of 8vtj by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-cyanophenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Mathews, I, Tran, K, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-cyanophenylalanine
To Be Published
8VTN
DownloadVisualize
BU of 8vtn by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.57 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine
To Be Published
8UCX
DownloadVisualize
BU of 8ucx by Molmil
Dihydrofolate Reductase Complexed with Folate
Descriptor: Dihydrofolate reductase, FOLIC ACID, MANGANESE (II) ION
Authors:Fried, S.D.E, Boxer, S.G.
Deposit date:2023-09-27
Release date:2023-10-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Role of Electrostatics in Hydride Transfer by Dihydrofolate Reductase
To Be Published
6B7R
DownloadVisualize
BU of 6b7r by Molmil
Truncated strand 11-less green fluorescent protein
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Green fluorescent protein
Authors:Deng, A, Boxer, S.G.
Deposit date:2017-10-05
Release date:2017-12-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural Insight into the Photochemistry of Split Green Fluorescent Proteins: A Unique Role for a His-Tag.
J. Am. Chem. Soc., 140, 2018
6B7T
DownloadVisualize
BU of 6b7t by Molmil
Truncated strand 10-less green fluorescent protein
Descriptor: Green fluorescent protein,Green fluorescent protein
Authors:Deng, A, Boxer, S.G.
Deposit date:2017-10-05
Release date:2017-12-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural Insight into the Photochemistry of Split Green Fluorescent Proteins: A Unique Role for a His-Tag.
J. Am. Chem. Soc., 140, 2018
4ZF5
DownloadVisualize
BU of 4zf5 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl2Y), H148D; circular permutant ( 50-51)
Descriptor: Green fluorescent protein
Authors:Oltrogge, L.M, Boxer, S.G.
Deposit date:2015-04-21
Release date:2015-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP).
Acs Cent.Sci., 1, 2015
4ZF3
DownloadVisualize
BU of 4zf3 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D; circular permutant ( 50-51)
Descriptor: Green fluorescent protein
Authors:Oltrogge, L.M, Boxer, S.G.
Deposit date:2015-04-21
Release date:2015-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP).
Acs Cent.Sci., 1, 2015
4ZF4
DownloadVisualize
BU of 4zf4 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51)
Descriptor: Green fluorescent protein
Authors:Oltrogge, L.M, Boxer, S.G.
Deposit date:2015-04-21
Release date:2015-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.823 Å)
Cite:Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP).
Acs Cent.Sci., 1, 2015
5KP4
DownloadVisualize
BU of 5kp4 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to 19-nortestosterone
Descriptor: (8~{R},9~{S},10~{R},13~{S},14~{S},17~{S})-13-methyl-17-oxidanyl-2,6,7,8,9,10,11,12,14,15,16,17-dodecahydro-1~{H}-cyclop enta[a]phenanthren-3-one, Steroid Delta-isomerase
Authors:Wu, Y, Boxer, S.G.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.706 Å)
Cite:A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.
J.Am.Chem.Soc., 138, 2016
5KP1
DownloadVisualize
BU of 5kp1 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to Equilenin; D40N, Y16(Cl-Y)
Descriptor: EQUILENIN, SULFATE ION, Steroid Delta-isomerase
Authors:Wu, Y, Boxer, S.G.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.218 Å)
Cite:A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.
J.Am.Chem.Soc., 138, 2016
5KP3
DownloadVisualize
BU of 5kp3 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to Equilenin; D40N, Y57(Cl-Y)
Descriptor: EQUILENIN, SULFATE ION, Steroid Delta-isomerase
Authors:Wu, Y, Boxer, S.G.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.
J.Am.Chem.Soc., 138, 2016
5D82
DownloadVisualize
BU of 5d82 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y16(Cl-Y)
Descriptor: Delta(5)-3-ketosteroid isomerase
Authors:Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids.
Biochemistry, 54, 2015
5D81
DownloadVisualize
BU of 5d81 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y57(Cl-Y)
Descriptor: Delta(5)-3-ketosteroid isomerase, SULFATE ION
Authors:Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids.
Biochemistry, 54, 2015
5D83
DownloadVisualize
BU of 5d83 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y32(Cl-Y)
Descriptor: Delta(5)-3-ketosteroid isomerase
Authors:Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids.
Biochemistry, 54, 2015
4MXX
DownloadVisualize
BU of 4mxx by Molmil
Human Src A403T mutant bound to kinase inhibitor bosutinib
Descriptor: 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile, Proto-oncogene tyrosine-protein kinase Src
Authors:Levinson, N.M, Boxer, S.G.
Deposit date:2013-09-26
Release date:2013-12-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A conserved water-mediated hydrogen bond network defines bosutinib's kinase selectivity.
Nat.Chem.Biol., 10, 2014

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon