Author results

1JQT
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FITTING OF L11 PROTEIN IN THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
分子名称:50S Ribosomal protein L11
著者Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
登録日2001-08-07
公開日2001-09-07
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (18 Å)
主引用文献Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQM
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FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G, GDP AND FUSIDIC ACID
分子名称:50S Ribosomal protein L11, Elongation Factor G
著者Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
登録日2001-08-07
公開日2001-09-07
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (18 Å)
主引用文献Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQS
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FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G' AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G AND GMPPCP, A NONHYDROLYSABLE GTP ANALOG
分子名称:50S Ribosomal protein L11, Elongation Factor G
著者Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
登録日2001-08-07
公開日2001-09-07
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (18 Å)
主引用文献Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1FCW
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TRNA POSITIONS DURING THE ELONGATION CYCLE
分子名称:TRNAPHE
著者Agrawal, R.K., Spahn, C.M.T., Penczek, P., Grassucci, R.A., Nierhaus, K.H., Frank, J.
登録日2000-07-19
公開日2000-08-11
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (17 Å)
主引用文献Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle.
J.Cell Biol., 150, 2000
1T1M
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BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE E. COLI 70S RIBOSOME
分子名称:dodecamer fragment of double helix from 23S rRNA, 42-mer fragment of double helix from 16S rRNA, ribosome recycling factor
著者Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.
登録日2004-04-16
公開日2004-06-15
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (12 Å)
主引用文献Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1O
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COMPONENTS OF THE CONTROL 70S RIBOSOME TO PROVIDE REFERENCE FOR THE RRF BINDING SITE
分子名称:dodecamer fragment of double helix from 23S rRNA, 19-mer fragment of the 23S rRNA, 42-mer fragment of double helix from 16S rRNA
著者Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.
登録日2004-04-16
公開日2004-06-15
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (12 Å)
主引用文献Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
4V47
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME
分子名称:23S ribosomal RNA, 5S ribosomal RNA, 50S ribosomal protein L2, ...
著者Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
登録日2003-05-06
公開日2014-07-09
最終更新日2018-01-24
実験手法ELECTRON MICROSCOPY (12.3 Å)
主引用文献Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V48
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME
分子名称:23S ribosomal RNA, 5S ribosomal RNA, tRNA-PHE, ...
著者Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
登録日2003-05-06
公開日2014-07-09
最終更新日2018-01-24
実験手法ELECTRON MICROSCOPY (11.5 Å)
主引用文献Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
1X18
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CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT
分子名称:5'-R(P*CP*GP*AP*UP*GP*GP*CP*GP*AP*AP*G)-3', RNA (31-MER), 5'-R(P*UP*UP*CP*CP*CP*GP*GP*GP*CP*CP*UP*GP*GP*GP*GP*CP*CP*CP*GP*C)-3', ...
著者Sharma, M.R., Barat, C., Agrawal, R.K.
登録日2005-04-02
公開日2005-05-17
最終更新日2013-12-18
実験手法ELECTRON MICROSCOPY (13.5 Å)
主引用文献Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
1X1L
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INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE 16S RRNA WITHIN THE THERMUS THERMOPHILUS 30S SUBUNIT.
分子名称:RNA (130-MER), GTP-binding protein era
著者Sharma, M.R., Barat, C., Agrawal, R.K.
登録日2005-04-06
公開日2005-05-17
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (13.5 Å)
主引用文献Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
3IY9
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LEISHMANIA TARENTOLAE MITOCHONDRIAL LARGE RIBOSOMAL SUBUNIT MODEL
分子名称:Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit, 39S ribosomal protein L2, mitochondrial, ...
著者Sharma, M.R., Booth, T.M., Simpson, L., Maslov, D.A., Agrawal, R.K.
登録日2009-04-20
公開日2009-07-07
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (14.1 Å)
主引用文献Structure of a mitochondrial ribosome with minimal RNA
Proc.Natl.Acad.Sci.USA, 106, 2009
6NU2
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STRUCTURAL INSIGHTS INTO UNIQUE FEATURES OF THE HUMAN MITOCHONDRIAL RIBOSOME RECYCLING
分子名称:16S rRNA, mt-tRNAVal, 39S ribosomal protein L2, ...
著者Sharma, M.R., Koripella, R.K., Agrawal, R.K.
登録日2019-01-30
公開日2019-04-17
最終更新日2019-05-08
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural insights into unique features of the human mitochondrial ribosome recycling.
Proc.Natl.Acad.Sci.USA, 116, 2019
6NU3
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STRUCTURAL INSIGHTS INTO UNIQUE FEATURES OF THE HUMAN MITOCHONDRIAL RIBOSOME RECYCLING
分子名称:16S rRNA, mt-tRNAVal, 39S ribosomal protein L2, ...
著者Sharma, M.R., Koripella, R.K., Agrawal, R.K.
登録日2019-01-30
公開日2019-04-17
最終更新日2019-05-08
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Structural insights into unique features of the human mitochondrial ribosome recycling.
Proc.Natl.Acad.Sci.USA, 116, 2019
6DZI
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CRYO-EM STRUCTURE OF MYCOBACTERIUM SMEGMATIS 70S C(MINUS) RIBOSOME 70S-MPY COMPLEX
分子名称:16S rRNA, CONSERVED PROTEIN DOMAIN, 30S ribosomal protein S3, ...
著者Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
登録日2018-07-05
公開日2018-09-26
実験手法ELECTRON MICROSCOPY (3.46 Å)
主引用文献Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DZK
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CRYO-EM STRUCTURE OF MYCOBACTERIUM SMEGMATIS C(MINUS) 30S RIBOSOMAL SUBUNIT WITH MPY
分子名称:16S rRNA, Conserved domain protein, 30S ribosomal protein S3, ...
著者Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
登録日2018-07-05
公開日2018-09-19
最終更新日2018-10-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DZP
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CRYO-EM STRUCTURE OF MYCOBACTERIUM SMEGMATIS C(MINUS) 50S RIBOSOMAL SUBUNIT
分子名称:23S rRNA, 5S rRNA, 50S ribosomal protein L2, ...
著者Sharma, M.R., Li, Y., Korripella, R., Yang, Y., Kaushal, P.S., Lin, Q., Wade, J.T., Gray, A.G., Derbyshire, K.M., Agrawal, R.K., Ojha, A.
登録日2018-07-05
公開日2018-10-03
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1EG0
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FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
分子名称:FRAGMENT OF 16S RRNA HELIX 23, FRAGMENT OF 23S RRNA, HELIX 95 OF 23S RRNA, ...
著者Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.
登録日2000-02-11
公開日2000-03-06
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (11.5 Å)
主引用文献Solution structure of the E. coli 70S ribosome at 11.5 A resolution.
Cell(Cambridge,Mass.), 100, 2000
1LS2
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FITTING OF EF-TU AND TRNA IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
分子名称:Phenylalanine transfer RNA, Elongation Factor Tu
著者Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
登録日2002-05-16
公開日2002-06-26
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (16.799999 Å)
主引用文献Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1LU3
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SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
分子名称:PHENYLALANINE TRANSFER RNA
著者Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
登録日2002-05-21
公開日2002-06-26
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (16.799999 Å)
主引用文献Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
2BCW
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COORDINATES OF THE N-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L11,C-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L7/L12 AND A PORTION OF THE G' DOMAIN OF ELONGATION FACTOR G, AS FITTED INTO CRYO-EM MAP OF AN ESCHERICHIA COLI 70S*EF-G*GDP*FUSIDIC ACID COMPLEX
分子名称:50S ribosomal protein L11, 50S ribosomal protein L7/L12, Elongation factor G
著者Datta, P.P., Sharma, M.R., Qi, L., Frank, J., Agrawal, R.K.
登録日2005-10-19
公開日2005-12-20
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (11.2 Å)
主引用文献Interaction of the G' Domain of Elongation Factor G and the C-Terminal Domain of Ribosomal Protein L7/L12 during Translocation as Revealed by Cryo-EM.
Mol.Cell, 20, 2005
2FTC
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STRUCTURAL MODEL FOR THE LARGE SUBUNIT OF THE MAMMALIAN MITOCHONDRIAL RIBOSOME
分子名称:Mitochondrial 16S ribosomal RNA, Mitochondrial ribosomal protein L1, mitochondrial ribosomal protein L2, ...
著者Mears, J.A., Sharma, M.R., Gutell, R.R., Richardson, P.E., Agrawal, R.K., Harvey, S.C.
登録日2006-01-24
公開日2006-04-11
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (12.1 Å)
主引用文献A Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
J.Mol.Biol., 358, 2006
2R1C
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COORDINATES OF THE THERMUS THERMOPHILUS RIBOSOME BINDING FACTOR A (RBFA) HOMOLOGY MODEL AS FITTED INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
分子名称:Ribosome-binding factor A
著者Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
登録日2007-08-22
公開日2008-03-18
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (12.5 Å)
主引用文献Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2R1G
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COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGHBORING RBFA AS OBTAINED BY FITTING INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
分子名称:16S RIBOSOMAL RNA HELIX 1, 16S RIBOSOMAL RNA HELIX 18, 16S RIBOSOMAL RNA HELIX 27, ...
著者Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
登録日2007-08-22
公開日2008-03-18
最終更新日2011-07-13
実験手法ELECTRON MICROSCOPY (12.5 Å)
主引用文献Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
3IY8
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LEISHMANIA TARENTOLAE MITONCHONDRIAL RIBOSOME SMALL SUBUNIT
分子名称:Leishmania tarentolae mitochondrial small subunit, 30S ribosomal protein S5, 30S ribosomal protein S6, ...
著者Sharma, M.R., Booth, T.M., Simpson, L., Maslov, D.A., Agrawal, R.K.
登録日2009-04-16
公開日2009-07-07
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (14.1 Å)
主引用文献Structure of a mitochondrial ribosome with minimal RNA
Proc.Natl.Acad.Sci.USA, 106, 2009
3IZY
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MAMMALIAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 2
分子名称:tRNA-Phe, Translation initiation factor IF-2, mitochondrial
著者Yassin, A.S., Haque, E., Datta, P.P., Elmore, K., Banavali, N.K., Spremulli, L.L., Agrawal, R.K.
登録日2011-01-19
公開日2011-03-23
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (10.8 Å)
主引用文献Insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1
Proc.Natl.Acad.Sci.USA, 108, 2011
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