Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1ZLB
DownloadVisualize
BU of 1zlb by Molmil
Crystal structure of catalytically-active phospholipase A2 in the absence of calcium
Descriptor: hypotensive phospholipase A2
Authors:Murakami, M.T, Cintra, A.C, Gabdoulkhakov, A, Genov, N, Betzel, C, Arni, R.K.
Deposit date:2005-05-05
Release date:2006-04-25
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Insights into metal ion binding in phospholipases A(2): ultra high-resolution crystal structures of an acidic phospholipase A(2) in the Ca(2+) free and bound states.
Biochimie, 88, 2006
1ZL7
DownloadVisualize
BU of 1zl7 by Molmil
Crystal structure of catalytically-active phospholipase A2 with bound calcium
Descriptor: CALCIUM ION, GLYCEROL, hypotensive phospholipase A2
Authors:Murakami, M.T, Cintra, A.C, Gabdoulkhakov, A, Genov, N, Betzel, C, Arni, R.K.
Deposit date:2005-05-05
Release date:2006-04-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into metal ion binding in phospholipases A(2): ultra high-resolution crystal structures of an acidic phospholipase A(2) in the Ca(2+) free and bound states.
Biochimie, 88, 2006
2AIQ
DownloadVisualize
BU of 2aiq by Molmil
Crystal structure of benzamidine-inhibited protein C activator from the venom of copperhead snake Agkistrodon contortrix contortrix
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BENZAMIDINE, ...
Authors:Murakami, M.T, Arni, R.K.
Deposit date:2005-07-30
Release date:2005-09-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Thrombomodulin-independent Activation of Protein C and Specificity of Hemostatically Active Snake Venom Serine Proteinases: CRYSTAL STRUCTURES OF NATIVE AND INHIBITED AGKISTRODON CONTORTRIX CONTORTRIX PROTEIN C ACTIVATOR.
J.Biol.Chem., 280, 2005
2AIP
DownloadVisualize
BU of 2aip by Molmil
Crystal structure of native protein C activator from the venom of copperhead snake Agkistrodon contortrix contortrix
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, GLYCEROL, ...
Authors:Murakami, M.T, Arni, R.K.
Deposit date:2005-07-30
Release date:2005-09-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Thrombomodulin-independent Activation of Protein C and Specificity of Hemostatically Active Snake Venom Serine Proteinases: CRYSTAL STRUCTURES OF NATIVE AND INHIBITED AGKISTRODON CONTORTRIX CONTORTRIX PROTEIN C ACTIVATOR.
J.Biol.Chem., 280, 2005
2F9R
DownloadVisualize
BU of 2f9r by Molmil
Crystal structure of the inactive state of the Smase I, a sphingomyelinase D from Loxosceles laeta venom
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, Sphingomyelinase D 1
Authors:Murakami, M.T, Gabdoulkhakov, A, Fernandes-Pedrosa, M.F, Betzel, C, Tambourgi, D.V, Arni, R.K.
Deposit date:2005-12-06
Release date:2006-06-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases D.
J.Biol.Chem., 280, 2005
2H8I
DownloadVisualize
BU of 2h8i by Molmil
Crystal Structure of the Bothropstoxin-I complexed with polyethylene glycol
Descriptor: DI(HYDROXYETHYL)ETHER, Phospholipase A2 homolog 1
Authors:Murakami, M.T, Arni, R.K.
Deposit date:2006-06-07
Release date:2007-06-19
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Interfacial surface charge and free accessibility to the PLA2-active site-like region are essential requirements for the activity of Lys49 PLA2 homologues
Toxicon, 49, 2007
2H8U
DownloadVisualize
BU of 2h8u by Molmil
Bucain, a cardiotoxin from the Malayan Krait Bungarus candidus
Descriptor: Bucain
Authors:Murakami, M.T, Kini, R.M, Arni, R.K.
Deposit date:2006-06-08
Release date:2007-06-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Bucain
To be Published
2H9E
DownloadVisualize
BU of 2h9e by Molmil
Crystal Structure of FXa/selectide/NAPC2 ternary complex
Descriptor: ACETATE ION, Anti-coagulant protein C2, Coagulation factor X heavy chain, ...
Authors:Murakami, M.T, Geiger, G, Tulinsky, A, Arni, R.K.
Deposit date:2006-06-09
Release date:2007-02-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intermolecular Interactions and Characterization of the Novel Factor Xa Exosite Involved in Macromolecular Recognition and Inhibition: Crystal Structure of Human Gla-domainless Factor Xa Complexed with the Anticoagulant Protein NAPc2 from the Hematophagous Nematode Ancylostoma caninum.
J.Mol.Biol., 366, 2007
1UMR
DownloadVisualize
BU of 1umr by Molmil
Crystal structure of the platelet activator convulxin, a disulfide linked a4b4 cyclic tetramer from the venom of Crotalus durissus terrificus
Descriptor: CONVULXIN ALPHA, CONVULXIN BETA
Authors:Murakami, M.T, Zela, S.P, Gava, L.M, Michelan-Duarte, S, Cintra, A.C.O, Arni, R.K.
Deposit date:2003-08-28
Release date:2003-11-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the Platelet Activator Convulxin, a Disulfide Linked A4B4 Cyclic Tetramer from the Venom of Crotalus Durissus Terrificus
Biochem.Biophys.Res.Commun., 310, 2003
1XX1
DownloadVisualize
BU of 1xx1 by Molmil
Structural basis for ion-coordination and the catalytic mechanism of sphingomyelinases D
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, SULFATE ION, ...
Authors:Murakami, M.T, Tambourgi, D.V, Arni, R.K.
Deposit date:2004-11-03
Release date:2005-01-18
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases d
J.Biol.Chem., 280, 2005
2PH4
DownloadVisualize
BU of 2ph4 by Molmil
Crystal structure of a novel Arg49 phospholipase A2 homologue from Zhaoermia mangshanensis venom
Descriptor: DI(HYDROXYETHYL)ETHER, SULFATE ION, Zhaoermiatoxin
Authors:Murakami, M.T, Kuch, U, Mebs, D, Arni, R.K.
Deposit date:2007-04-10
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of a novel myotoxic Arg49 phospholipase A(2) homolog (zhaoermiatoxin) from Zhaoermia mangshanensis snake venom: Insights into Arg49 coordination and the role of Lys122 in the polarization of the C-terminus.
Toxicon, 51, 2008
1XXN
DownloadVisualize
BU of 1xxn by Molmil
Crystal structure of a mesophilic xylanase A from Bacillus subtilis 1A1
Descriptor: Endo-1,4-beta-xylanase A, S,R MESO-TARTARIC ACID
Authors:Murakami, M.T, Ruller, R, Ward, R.J, Arni, R.K.
Deposit date:2004-11-07
Release date:2005-10-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Correlation of temperature induced conformation change with optimum catalytic activity in the recombinant G/11 xylanase A from Bacillus subtilis strain 168 (1A1).
Febs Lett., 579, 2005
1Y4L
DownloadVisualize
BU of 1y4l by Molmil
Crystal structure of Bothrops asper myotoxin II complexed with the anti-trypanosomal drug suramin
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID, ISOPROPYL ALCOHOL, ...
Authors:Murakami, M.T, Arruda, E.Z, Melo, P.A, Martinez, A.B, Calil-Elias, S, Tomaz, M.A, Lomonte, B, Gutierrez, J.M, Arni, R.K.
Deposit date:2004-12-01
Release date:2005-06-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Inhibition of Myotoxic Activity of Bothrops asper Myotoxin II by the Anti-trypanosomal Drug Suramin.
J.Mol.Biol., 350, 2005
4E2D
DownloadVisualize
BU of 4e2d by Molmil
Structure of the old yellow enzyme from Trypanosoma cruzi
Descriptor: DIMETHYL SULFOXIDE, FLAVIN MONONUCLEOTIDE, Old Yellow Protein
Authors:Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C.
Deposit date:2012-03-08
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:High resolution crystal structure and in solution studies of the Old Yellow Enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
4E2B
DownloadVisualize
BU of 4e2b by Molmil
High resolution crystal structure of the old yellow enzyme from Trypanosoma cruzi
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
Authors:Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C.
Deposit date:2012-03-08
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.269 Å)
Cite:High resolution crystal structure and in solution studies of the old yellow enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
2AOZ
DownloadVisualize
BU of 2aoz by Molmil
Crystal structure of the myotoxin-II from Atropoides nummifer venom
Descriptor: Phospholipase A2 homolog, SULFATE ION
Authors:Melo, C.C, Murakami, M.T, Angulo, Y, Lomonte, B, Arni, R.K.
Deposit date:2005-08-15
Release date:2006-07-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structure of myotoxin II, a catalytically inactive Lys49 phospholipase A2 homologue from Atropoides nummifer venom.
Acta Crystallogr.,Sect.F, 62, 2006
1UMV
DownloadVisualize
BU of 1umv by Molmil
Crystal structure of an acidic, non-myotoxic phospholipase A2 from the venom of Bothrops jararacussu
Descriptor: CALCIUM ION, HYPOTENSIVE PHOSPHOLIPASE A2
Authors:Murakami, M.T, Watanabe, L, Cintra, A.C.O, Arni, R.K.
Deposit date:2003-08-28
Release date:2003-09-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystal Structure of an Acidic Platelet Aggregation Inhibitor and Hypotensive Phospholipase A(2) in the Monomeric and Dimeric States: Insights Into its Oligomeric State
Biochem.Biophys.Res.Commun., 323, 2004
8D89
DownloadVisualize
BU of 8d89 by Molmil
Crystal structure of a novel GH5 enzyme retrieved from capybara gut metagenome
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, ACETATE ION, CHLORIDE ION, ...
Authors:Martins, M.P, Morais, M.A.B, Murakami, M.T.
Deposit date:2022-06-08
Release date:2022-11-02
Last modified:2022-11-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-beta-mannans.
Acta Crystallogr D Struct Biol, 78, 2022
7OVA
DownloadVisualize
BU of 7ova by Molmil
Crystal structure of an AA9 LPMO
Descriptor: (2S)-2-hydroxybutanedioic acid, COPPER (II) ION, Endoglucanase, ...
Authors:Males, A, Correa, T.L.R, Murakami, M.T, Walton, P.H, Davies, G.J.
Deposit date:2021-06-14
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of an AA9 LPMO
To Be Published
5KB6
DownloadVisualize
BU of 5kb6 by Molmil
High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine
Descriptor: ACETATE ION, ADENOSINE, Adenosine kinase, ...
Authors:Oliveira, R.R, Neto, R.M, Polo, C.C, Tonoli, C.C.C, Murakami, M.T, Franchini, K.G.
Deposit date:2016-06-02
Release date:2017-06-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine
To Be Published
5KB5
DownloadVisualize
BU of 5kb5 by Molmil
Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
Descriptor: ADENOSINE, ADENOSINE-5'-DIPHOSPHATE, Adenosine kinase, ...
Authors:Oliveira, R.R, Neto, R.M, Polo, C.C, Tonoli, C.C.C, Murakami, M.T, Franchini, K.G.
Deposit date:2016-06-02
Release date:2017-06-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
To Be Published
7JVH
DownloadVisualize
BU of 7jvh by Molmil
Crystal structure of a GH43_12 retrieved from capybara gut metagenome
Descriptor: GLYCEROL, Glycoside Hydrolase Family 43_12
Authors:Cabral, L, Domingues, M.N, Martins, M.P, Persinoti, G.F, Morais, M.A.B, Murakami, M.T.
Deposit date:2020-08-21
Release date:2021-09-08
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Crystal structure of a GH43_12 retrieved from capybara gut metagenome
To Be Published
7JVI
DownloadVisualize
BU of 7jvi by Molmil
Crystal structure of a beta-helix domain retrieved from capybara gut metagenome
Descriptor: Beta-helix domain, CALCIUM ION
Authors:Martins, M.P, Genoroso, W.C, Domingues, M.N, Persinoti, G.F, Morais, M.A.B, Murakami, M.T.
Deposit date:2020-08-21
Release date:2021-09-08
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.
Nat Commun, 13, 2022
3GBO
DownloadVisualize
BU of 3gbo by Molmil
Crystal structure of BmooMPalpha-I, a non-hemorrhagic metalloproteinase isolated from Bothrops moojeni snake venom
Descriptor: CALCIUM ION, ZINC ION, Zinc metalloproteinase BmooMPalfa-I
Authors:Akao, P.K, Tonoli, C.C.C, Murakami, M.T.
Deposit date:2009-02-20
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural studies of BmooMPalpha-I, a non-hemorrhagic metalloproteinase from Bothrops moojeni venom.
Toxicon, 55, 2010
3KVE
DownloadVisualize
BU of 3kve by Molmil
Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase, ...
Authors:Gergiova, D, Murakami, M.T, Perbandt, M, Arni, R.K, Betzel, C.
Deposit date:2009-11-30
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site
To be Published

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon