Author results

1B5P
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1
Descriptor:PROTEIN (ASPARTATE AMINOTRANSFERASE), PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.
Deposit date:1999-01-07
Release date:2003-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
1BJW
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ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS
Descriptor:ASPARTATE AMINOTRANSFERASE, PHOSPHATE ION
Authors:Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-06-30
Release date:1999-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate.
Biochemistry, 38, 1999
1CJ6
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T11A MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME), SODIUM ION
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-04-30
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1CJ7
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T11V MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME), SODIUM ION
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-04-30
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1CJ8
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T40A MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME), SODIUM ION
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-04-30
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1CJ9
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T40V MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME), SODIUM ION
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-04-30
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1CKC
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T43A MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME), SODIUM ION
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-04-30
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1CKD
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T43V MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME), SODIUM ION
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-04-30
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1CKF
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T52A MUTANT HUMAN LYSOZYME
Descriptor:PROTEIN (LYSOZYME), SODIUM ION
Authors:Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.
Deposit date:1999-04-22
Release date:1999-04-30
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry, 38, 1999
1DI3
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ROLE OF AMINO ACID RESIDUES AT TURNS IN THE CONFORMATIONAL STABILITY AND FOLDING OF HUMAN LYSOZYME
Descriptor:LYSOZYME C, SODIUM ION
Authors:Takano, K., Yamagata, Y., Yutani, K.
Deposit date:1999-11-28
Release date:1999-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Role of amino acid residues at turns in the conformational stability and folding of human lysozyme.
Biochemistry, 39, 2000
1GD9
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CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1
Descriptor:ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Harata, K., Matsui, I., Kuramitsu, S.
Deposit date:2000-09-22
Release date:2001-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Temperature dependence of the enzyme-substrate recognition mechanism.
J.Biochem.(Tokyo), 129, 2001
1GDE
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CRYSTAL STRUCTURE OF PYROCOCCUS PROTEIN A-1 E-FORM
Descriptor:ASPARTATE AMINOTRANSFERASE, GLUTAMIC ACID, PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H., Harata, K., Matsui, I., Kuramitsu, S.
Deposit date:2000-09-23
Release date:2001-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Temperature dependence of the enzyme-substrate recognition mechanism.
J.Biochem.(Tokyo), 129, 2001
1UJ4
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RIBOSE-5-PHOSPHATE ISOMERASE
Descriptor:ribose 5-phosphate isomerase, CHLORIDE ION
Authors:Hamada, K., Ago, H., Sugahara, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-26
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi)
J.Biol.Chem., 278, 2003
1UJN
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CRYSTAL STRUCTURE OF DEHYDROQUINATE SYNTHASE FROM THERMUS THERMOPHILUS HB8
Descriptor:dehydroquinate synthase
Authors:Sugahara, M., Yokoyama, S., Kuramitsu, S., Miyano, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-08-06
Release date:2003-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of dehydroquinate synthase from Thermus thermophilus HB8 showing functional importance of the dimeric state.
Proteins, 58, 2005
1V8M
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CRYSTAL STRUCTURE ANALYSIS OF ADP-RIBOSE PYROPHOSPHATASE COMPLEXED WITH ADP-RIBOSE AND GD
Descriptor:ADP-ribose pyrophosphatase, ADENOSINE-5-DIPHOSPHORIBOSE, GADOLINIUM ATOM
Authors:Yoshiba, S., Ooga, T., Nakagawa, N., Shibata, T., Inoue, Y., Yokoyama, S., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-12
Release date:2004-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1V8R
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CRYSTAL STRUCTURE ANALYSIS OF THE ADP-RIBOSE PYROPHOSPHATASE COMPLEXED WITH ADP-RIBOSE AND ZN
Descriptor:ADP-ribose pyrophosphatase, ZINC ION, ADENOSINE-5-DIPHOSPHORIBOSE
Authors:Yoshiba, S., Ooga, T., Nakagawa, N., Shibata, T., Inoue, Y., Yokoyama, S., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-14
Release date:2005-02-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal
J.Biol.Chem., 279, 2004
1WEH
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CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TT1887 FROM THERMUS THERMOPHILUS HB8
Descriptor:Conserved hypothetical protein TT1887
Authors:Kukimoto-Niino, M., Murayama, K., Idaka, M., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8
PROTEIN SCI., 13, 2004
1WXX
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CRYSTAL STRUCTURE OF TT1595, A PUTATIVE SAM-DEPENDENT METHYLTRANSFERASE FROM THERMUS THERMOPHILLUS HB8
Descriptor:hypothetical protein TTHA1280, POTASSIUM ION, PHOSPHATE ION
Authors:Pioszak, A.A., Murayama, K., Nakagawa, N., Ebihara, A., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-02
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.
Acta Crystallogr.,Sect.F, 61, 2005
1X55
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CRYSTAL STRUCTURE OF ASPARAGINYL-TRNA SYNTHETASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH ASPARAGINYL-ADENYLATE ANALOGUE
Descriptor:Asparaginyl-tRNA synthetase, PHOSPHATE ION, MAGNESIUM ION, ...
Authors:Iwasaki, W., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-15
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006
2CVB
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CRYSTAL STRUCTURE OF A THIOREDOXIN-LIKE PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:probable thiol-disulfide isomerase/thioredoxin
Authors:Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-01
Release date:2005-12-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a thioredoxin-like protein from Thermus thermophilus HB8
To be Published
2CVZ
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STRUCTURE OF HYDROXYISOBUTYRATE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8
Descriptor:3-hydroxyisobutyrate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Lokanath, N.K., Kunishima, N., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-14
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Novel NADP-dependent 3-Hydroxyisobutyrate Dehydrogenase from Thermus thermophilus HB8
J.Mol.Biol., 352, 2005
2CW4
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CRYSTAL STRUCTURE OF TTHA0137 FROM THERMUS THERMOPHILUS HB8
Descriptor:translation initiation inhibitor
Authors:Wang, H., Murayama, K., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-16
Release date:2005-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of TTHA0137 from Thermus Thermophilus HB8
TO BE PUBLISHED
2CYB
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CRYSTAL STRUCTURE OF TYROSYL-TRNA SYNTHETASE COMPLEXED WITH L-TYROSINE FROM ARCHAEOGLOBUS FULGIDUS
Descriptor:Tyrosyl-tRNA synthetase, TYROSINE
Authors:Kuratani, M., Sakai, H., Takahashi, M., Yanagisawa, T., Kobayashi, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-06
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Tyrosyl-tRNA Synthetases from Archaea
J.Mol.Biol., 355, 2006
2D4O
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CRYSTAL STRUCTURE OF TTHA1254 (I68M MUTANT) FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA1254
Authors:Mizohata, E., Uchikubo, T., Kinoshita, Y., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-21
Release date:2006-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of TTHA1254 (I68M mutant) from Thermus thermophilus HB8
To be Published
2DP6
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CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE IN COMPLEX WITH AP:C CONTAINING DNA
Descriptor:5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*CP*GP*CP*AP*AP*CP*A)-3', uracil-DNA glycosylase, ...
Authors:Kosaka, H., Nakagawa, N., Masui, R., Kuramitsu, S., Hoseki, J., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-05-07
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA Reveals Insights into the Mechanism for Substrate Recognition and Catalysis
To be Published