Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5T1A
DownloadVisualize
BU of 5t1a by Molmil
Structure of CC Chemokine Receptor 2 with Orthosteric and Allosteric Antagonists
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2~{R})-1-(4-chloranyl-2-fluoranyl-phenyl)-2-cyclohexyl-3-ethanoyl-4-oxidanyl-2~{H}-pyrrol-5-one, (3S)-1-{(1S,2R,4R)-4-[methyl(propan-2-yl)amino]-2-propylcyclohexyl}-3-{[6-(trifluoromethyl)quinazolin-4-yl]amino}pyrrolidin-2-one, ...
Authors:Zheng, Y, Qin, L, Ortiz Zacarias, N.V, de Vries, H, Han, G.W, Gustavsson, M, Dabros, M, Zhao, C, Cherney, R.J, Carter, P, Stamos, D, Abagyan, R, Cherezov, V, Stevens, R.C, IJzerman, A.P, Heitman, L.H, Tebben, A, Kufareva, I, Handel, T.M.
Deposit date:2016-08-18
Release date:2016-12-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.806 Å)
Cite:Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists.
Nature, 540, 2016
5UIW
DownloadVisualize
BU of 5uiw by Molmil
Crystal Structure of CC Chemokine Receptor 5 (CCR5) in complex with high potency HIV entry inhibitor 5P7-CCL5
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, C-C chemokine receptor type 5,Rubredoxin chimera, C-C motif chemokine 5, ...
Authors:Zheng, Y, Qin, L, Han, G.W, Gustavsson, M, Kawamura, T, Stevens, R.C, Cherezov, V, Kufareva, I, Handel, T.M.
Deposit date:2017-01-15
Release date:2017-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Structure of CC Chemokine Receptor 5 with a Potent Chemokine Antagonist Reveals Mechanisms of Chemokine Recognition and Molecular Mimicry by HIV.
Immunity, 46, 2017
4YIA
DownloadVisualize
BU of 4yia by Molmil
Structural mechanism of hormone release in thyroxine binding globulin
Descriptor: CALCIUM ION, CHLORIDE ION, INDOMETHACIN, ...
Authors:Zheng, Y.
Deposit date:2015-03-01
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural mechanism of hormone release in thyroxine Binding globulin
To Be Published
5AY7
DownloadVisualize
BU of 5ay7 by Molmil
A psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase
Descriptor: xylanase
Authors:Zheng, Y, Li, Y, Liu, W, Guo, R.T.
Deposit date:2015-08-10
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural insight into potential cold adaptation mechanism through a psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase.
J.Struct.Biol., 193, 2016
5D4Y
DownloadVisualize
BU of 5d4y by Molmil
A psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase
Descriptor: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, xylanase
Authors:Zheng, Y, Guo, R.T.
Deposit date:2015-08-10
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insight into potential cold adaptation mechanism through a psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase.
J.Struct.Biol., 193, 2016
3VMV
DownloadVisualize
BU of 3vmv by Molmil
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165
Descriptor: Pectate lyase, SULFATE ION
Authors:Zheng, Y, Huang, C.H, Liu, W, Ko, T.P, Xue, Y, Zhou, C, Zhang, G, Guo, R.T, Ma, Y.
Deposit date:2011-12-16
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure and substrate-binding mode of a novel pectate lyase from alkaliphilic Bacillus sp. N16-5.
Biochem.Biophys.Res.Commun., 420, 2012
3VMW
DownloadVisualize
BU of 3vmw by Molmil
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate
Descriptor: Pectate lyase, SULFATE ION, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Zheng, Y, Huang, C.H, Liu, W, Ko, T.P, Xue, Y, Zhou, C, Zhang, G, Guo, R.T, Ma, Y.
Deposit date:2011-12-17
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and substrate-binding mode of a novel pectate lyase from alkaliphilic Bacillus sp. N16-5.
Biochem.Biophys.Res.Commun., 420, 2012
8I3X
DownloadVisualize
BU of 8i3x by Molmil
Rice APIP6-RING homodimer
Descriptor: RING-type domain-containing protein, ZINC ION
Authors:Zheng, Y, Zhang, X, Liu, Y, Liu, J, Wang, D.
Deposit date:2023-01-18
Release date:2023-11-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of rice APIP6 reveals a new dimerization mode of RING-type E3 ligases that facilities the construction of its working model
Phytopathol Res, 5, 2023
6OJJ
DownloadVisualize
BU of 6ojj by Molmil
Structure of ScAtg3 with truncations in N-terminal and flexible region (FR)
Descriptor: Autophagy-related protein 3,Autophagy-related protein 3, GLYCEROL
Authors:Zheng, Y, Qiu, Y, Schulman, B.A.
Deposit date:2019-04-11
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:A switch element in the autophagy E2 Atg3 mediates allosteric regulation across the lipidation cascade.
Nat Commun, 10, 2019
3S28
DownloadVisualize
BU of 3s28 by Molmil
The crystal structure of sucrose synthase-1 in complex with a breakdown product of the UDP-glucose
Descriptor: 1,5-anhydro-D-arabino-hex-1-enitol, 1,5-anhydro-D-fructose, MALONIC ACID, ...
Authors:Zheng, Y, Garavito, R.M.
Deposit date:2011-05-16
Release date:2011-08-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Structure of Sucrose Synthase-1 from Arabidopsis thaliana and Its Functional Implications.
J.Biol.Chem., 286, 2011
3S27
DownloadVisualize
BU of 3s27 by Molmil
The crystal structure of sucrose synthase-1 from Arabidopsis thaliana and its functional implications.
Descriptor: MALONIC ACID, POTASSIUM ION, SULFATE ION, ...
Authors:Zheng, Y, Garavito, R.M.
Deposit date:2011-05-16
Release date:2011-08-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:The Structure of Sucrose Synthase-1 from Arabidopsis thaliana and Its Functional Implications.
J.Biol.Chem., 286, 2011
3WGG
DownloadVisualize
BU of 3wgg by Molmil
Crystal structure of RSP in complex with alpha-NAD+
Descriptor: Redox-sensing transcriptional repressor rex, SULFATE ION, alpha-Diphosphopyridine nucleotide
Authors:Zheng, Y, Ko, T.-P, Guo, R.-T.
Deposit date:2013-08-05
Release date:2014-08-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Binding mode of the oxidized alpha-anomer of NAD(+) to RSP, a Rex-family repressor
Biochem.Biophys.Res.Commun., 456, 2015
3X2E
DownloadVisualize
BU of 3x2e by Molmil
A thermophilic hydrolase
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Adenosylhomocysteinase
Authors:Zheng, Y, Ko, T.P, Huang, C.H.
Deposit date:2014-12-21
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structures of S-adenosylhomocysteine hydrolase from the thermophilic bacterium Thermotoga maritima.
J.Struct.Biol., 190, 2015
3X2F
DownloadVisualize
BU of 3x2f by Molmil
A Thermophilic S-Adenosylhomocysteine Hydrolase
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Adenosylhomocysteinase, NITRATE ION, ...
Authors:Zheng, Y, Ko, T.P, Huang, C.H.
Deposit date:2014-12-21
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Crystal structures of S-adenosylhomocysteine hydrolase from the thermophilic bacterium Thermotoga maritima.
J.Struct.Biol., 190, 2015
3WGH
DownloadVisualize
BU of 3wgh by Molmil
Crystal structure of RSP in complex with beta-NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CACODYLATE ION, Redox-sensing transcriptional repressor rex, ...
Authors:Zheng, Y, Ko, T.-P, Guo, R.-T.
Deposit date:2013-08-05
Release date:2014-08-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes.
J.Struct.Biol., 188, 2014
3WGI
DownloadVisualize
BU of 3wgi by Molmil
Crystal structure of RSP in complex with beta-NAD+ and operator DNA
Descriptor: DNA (5'-D(*TP*AP*GP*AP*TP*TP*GP*TP*TP*AP*AP*TP*CP*GP*AP*TP*TP*AP*AP*CP*AP*AP*TP*C)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM), Redox-sensing transcriptional repressor rex
Authors:Zheng, Y, Ko, T.-P, Guo, R.-T.
Deposit date:2013-08-05
Release date:2014-08-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes.
J.Struct.Biol., 188, 2014
3WG9
DownloadVisualize
BU of 3wg9 by Molmil
Crystal structure of RSP, a Rex-family repressor
Descriptor: Redox-sensing transcriptional repressor rex, SULFATE ION
Authors:Zheng, Y, Ko, T.-P, Guo, R.-T.
Deposit date:2013-08-03
Release date:2014-08-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes.
J.Struct.Biol., 188, 2014
7U58
DownloadVisualize
BU of 7u58 by Molmil
YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis
Descriptor: MAGNESIUM ION, MusD, ZINC ION
Authors:Zheng, Y, Nair, S.K.
Deposit date:2022-03-01
Release date:2022-11-02
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis.
Nat.Chem.Biol., 19, 2023
7TWM
DownloadVisualize
BU of 7twm by Molmil
Structure of a borosin methyltransferase from Mycena rosella with peptide CspL(MroMCspL) in complex with SAH
Descriptor: MroMCspL, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zheng, Y, Ongpipattanakul, C, Nair, S.K.
Deposit date:2022-02-07
Release date:2022-11-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Bioconjugate Platform for Iterative Backbone N -Methylation of Peptides.
Acs Catalysis, 12, 2022
7TWK
DownloadVisualize
BU of 7twk by Molmil
Structure of a borosin methyltransferase from Mycena rosella with native peptide (MroMA1) in complex with SAH
Descriptor: GLYCEROL, MroMA1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zheng, Y, Ongpipattanakul, C, Nair, S.K.
Deposit date:2022-02-07
Release date:2022-11-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Bioconjugate Platform for Iterative Backbone N -Methylation of Peptides.
Acs Catalysis, 12, 2022
7TWL
DownloadVisualize
BU of 7twl by Molmil
Structure of a borosin methyltransferase from Mycena rosella with peptide A2 (MroMA2) in complex with SAH
Descriptor: MroMA2, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Zheng, Y, Ongpipattanakul, C, Nair, S.K.
Deposit date:2022-02-07
Release date:2022-11-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Bioconjugate Platform for Iterative Backbone N -Methylation of Peptides.
Acs Catalysis, 12, 2022
5MKV
DownloadVisualize
BU of 5mkv by Molmil
Crystal Structure of Human Dihydropyrimidinease-like 2 (DPYSL2A)/Collapsin Response Mediator Protein (CRMP2) residues 13-516
Descriptor: 1,2-ETHANEDIOL, Dihydropyrimidinase-related protein 2
Authors:Sethi, R, Zheng, Y, Krojer, T, Velupillai, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Ahmed, A.A, von Delft, F.
Deposit date:2016-12-05
Release date:2017-02-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Tuning microtubule dynamics to enhance cancer therapy by modulating FER-mediated CRMP2 phosphorylation.
Nat Commun, 9, 2018
5MLE
DownloadVisualize
BU of 5mle by Molmil
Crystal Structure of Human Dihydropyrimidinease-like 2 (DPYSL2A)/Collapsin Response Mediator Protein (CRMP2 13-516) Mutant Y479E/Y499E
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Dihydropyrimidinase-related protein 2, ...
Authors:Sethi, R, Zheng, Y, Talon, R, Velupillai, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Ahmed, A.A, von Delft, F.
Deposit date:2016-12-06
Release date:2017-02-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Tuning microtubule dynamics to enhance cancer therapy by modulating FER-mediated CRMP2 phosphorylation.
Nat Commun, 9, 2018
6WY6
DownloadVisualize
BU of 6wy6 by Molmil
Crystal structure of S. cerevisiae Atg8 in complex with Ede1 (1220-1247)
Descriptor: Autophagy-related protein 8, EH domain-containing and endocytosis protein 1
Authors:Zheng, Y, Wilfling, F, Baumeister, W, Schulman, B.A.
Deposit date:2020-05-12
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.773 Å)
Cite:A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits.
Mol.Cell, 80, 2020
7S5F
DownloadVisualize
BU of 7s5f by Molmil
Crystal structure of mannose-6-phosphate reductase from celery (Apium graveolens) leaves with NADP+ and mannonic acid bound
Descriptor: D-MANNONIC ACID, Manose-6-phosphate reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zheng, Y, Bhayani, J.A, Romina, I.M, Hartman, M.D, Cereijo, A.E, Ballicora, M.A, Iglesias, A.A, Figueroa, C.M, Liu, D.
Deposit date:2021-09-10
Release date:2022-03-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural Determinants of Sugar Alcohol Biosynthesis in Plants: The Crystal Structures of Mannose-6-Phosphate and Aldose-6-Phosphate Reductases.
Plant Cell.Physiol., 63, 2022

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon