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6C66
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BU of 6c66 by Molmil
CRISPR RNA-guided surveillance complex, pre-nicking
Descriptor: CRISPR-associated helicase, Cas3 family, CRISPR-associated protein, ...
Authors:Xiao, Y, Luo, M, Liao, M, Ke, A.
Deposit date:2018-01-17
Release date:2018-06-27
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:Structure basis for RNA-guided DNA degradation by Cascade and Cas3.
Science, 361, 2018
5U0A
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BU of 5u0a by Molmil
CRISPR RNA-guided surveillance complex
Descriptor: CRISPR-associated protein, Cas5e family, Cse1 family, ...
Authors:Xiao, Y, Luo, M, Hayes, R.P, Kim, J, Ng, S, Ding, F, Liao, M, Ke, A.
Deposit date:2016-11-23
Release date:2017-08-09
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System.
Cell, 170, 2017
5U07
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BU of 5u07 by Molmil
CRISPR RNA-guided surveillance complex
Descriptor: CRISPR-associated protein, Cas5e family, Cse1 family, ...
Authors:Xiao, Y, Luo, M, Hayes, R.P, Kim, J, Ng, S, Ding, F, Liao, M, Ke, A.
Deposit date:2016-11-23
Release date:2017-08-09
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System.
Cell, 170, 2017
8D6J
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BU of 8d6j by Molmil
Human Ago2 bound to miR122(21nt) with PIWI loop swapped to AtAgo10 sequence
Descriptor: MAGNESIUM ION, Protein argonaute-2, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')
Authors:Xiao, Y, MacRae, I.
Deposit date:2022-06-06
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength.
Embo Rep., 24, 2023
8D71
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BU of 8d71 by Molmil
Human Ago2 bound to miR122(21nt)
Descriptor: MAGNESIUM ION, Protein argonaute-2, miR-122-21nt
Authors:Xiao, Y, MacRae, I.
Deposit date:2022-06-07
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength.
Embo Rep., 24, 2023
2AMN
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BU of 2amn by Molmil
Solution structure of Fowlicidin-1, a novel Cathelicidin antimicrobial peptide from chicken
Descriptor: cathelicidin
Authors:Xiao, Y, Dai, H, Bommineni, Y.R, Prakash, O, Zhang, G.
Deposit date:2005-08-09
Release date:2006-07-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure-activity relationships of fowlicidin-1, a cathelicidin antimicrobial peptide in chicken.
Febs J., 273, 2006
7SWF
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BU of 7swf by Molmil
Cryo-EM structure of Arabidopsis Ago10-guide-target RNA complex in a central duplex conformation
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*CP*CP*AP*UP*UP*GP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*A)-3'), ...
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-19
Release date:2022-08-03
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:The molecular mechanism of microRNA duplex selectivity of Arabidopsis ARGONAUTE10.
Nucleic Acids Res., 50, 2022
7SVA
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BU of 7sva by Molmil
Cryo-EM structure of Arabidopsis Ago10-guide RNA complex
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-18
Release date:2022-11-23
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural basis for RNA slicing by a plant Argonaute.
Nat.Struct.Mol.Biol., 30, 2023
7SWQ
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BU of 7swq by Molmil
Cryo-EM structure of Arabidopsis Ago10-guide-target RNA complex in a bent duplex conformation
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*CP*CP*AP*UP*UP*GP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), ...
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-21
Release date:2022-11-23
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structural basis for RNA slicing by a plant Argonaute.
Nat.Struct.Mol.Biol., 30, 2023
8H7Q
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BU of 8h7q by Molmil
Cryo-EM structure of Synechocystis sp. PCC6714 Cascade at 3.8 angstrom resolution
Descriptor: CRISPR RNA, CRISPR associated protein Cas11b, CRISPR associated protein Cas5, ...
Authors:Xiao, Y, Lu, M, Yu, C, Zhang, Y.
Deposit date:2022-10-20
Release date:2023-10-25
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of Synechocystis sp. PCC6714 Cascade at 3.8 angstrom resolution
To Be Published
8IP0
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BU of 8ip0 by Molmil
Cryo-EM structure of type I-B Cascade bound to a PAM-containing dsDNA target at 3.6 angstrom resolution
Descriptor: CRISPR associated protein Cas11b, DNA (41-MER), DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ...
Authors:Xiao, Y, Lu, M, Yu, C, Zhang, Y.
Deposit date:2023-03-13
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of type I-B Cascade bound to a PAM-containing dsDNA target at 3.6 angstrom resolution.
To be published
8IKX
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BU of 8ikx by Molmil
An Arabidopsis polygalacturonase PGLR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Pectin lyase-like superfamily protein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Xiao, Y, Chai, J.
Deposit date:2023-03-01
Release date:2024-02-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A plant mechanism of hijacking pathogen virulence factors to trigger innate immunity.
Science, 383, 2024
8IKW
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BU of 8ikw by Molmil
A complex structure of PGIP-PG
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Endo-polygalacturonase, ...
Authors:Xiao, Y, Chai, J.
Deposit date:2023-03-01
Release date:2024-02-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:A plant mechanism of hijacking pathogen virulence factors to trigger innate immunity.
Science, 383, 2024
2MXU
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BU of 2mxu by Molmil
42-Residue Beta Amyloid Fibril
Descriptor: Amyloid beta A4 protein
Authors:Xiao, Y, Ma, B, McElheny, D, Parthasarathy, S, Long, F, Hoshi, M, Nussinov, R, Ishii, Y.
Deposit date:2015-01-14
Release date:2015-05-06
Last modified:2015-06-17
Method:SOLID-STATE NMR
Cite:A beta (1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease.
Nat.Struct.Mol.Biol., 22, 2015
3UB0
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BU of 3ub0 by Molmil
Crystal structure of the nonstructural protein 7 and 8 complex of Feline Coronavirus
Descriptor: Non-structural protein 6, nsp6,, Non-structural protein 7, ...
Authors:Xiao, Y, Hilgenfeld, R, Ma, Q.
Deposit date:2011-10-22
Release date:2012-02-22
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Nonstructural proteins 7 and 8 of feline coronavirus form a 2:1 heterotrimer that exhibits primer-independent RNA polymerase activity.
J.Virol., 86, 2012
6A5A
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BU of 6a5a by Molmil
Crystal structure of plant Receptor-like Kinase ANX1
Descriptor: Receptor-like protein kinase ANXUR1
Authors:Xiao, Y, Chai, J.
Deposit date:2018-06-22
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.942 Å)
Cite:Mechanisms of RALF peptide perception by a heterotypic receptor complex.
Nature, 572, 2019
6A5D
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BU of 6a5d by Molmil
Crystal structure of plant Glycosylphosphatidylinositol-anchored Protein LLG1
Descriptor: GPI-anchored protein LLG1, alpha-L-fucopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Xiao, Y, Chai, J.
Deposit date:2018-06-23
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Mechanisms of RALF peptide perception by a heterotypic receptor complex.
Nature, 572, 2019
6A5C
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BU of 6a5c by Molmil
Crystal structure of plant Receptor-like Kinase ANX2
Descriptor: Receptor-like protein kinase ANXUR2
Authors:Xiao, Y, Chai, J.
Deposit date:2018-06-23
Release date:2019-06-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Mechanisms of RALF peptide perception by a heterotypic receptor complex.
Nature, 572, 2019
6A5E
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BU of 6a5e by Molmil
Crystal structure of plant peptide RALF23 in complex with FER and LLG2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GPI-anchored protein LLG2, ...
Authors:Xiao, Y, Chai, J.
Deposit date:2018-06-23
Release date:2019-06-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.766 Å)
Cite:Mechanisms of RALF peptide perception by a heterotypic receptor complex.
Nature, 572, 2019
6A5B
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BU of 6a5b by Molmil
Crystal structure of plant Receptor-like Kinase FER
Descriptor: Receptor-like protein kinase FERONIA
Authors:Xiao, Y, Chai, J.
Deposit date:2018-06-23
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.205 Å)
Cite:Mechanisms of RALF peptide perception by a heterotypic receptor complex.
Nature, 572, 2019
5XVN
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BU of 5xvn by Molmil
E. far Cas1-Cas2/prespacer binary complex
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2022-10-12
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
5XVO
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BU of 5xvo by Molmil
E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and half-integration states
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2022-10-12
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
5XVP
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BU of 5xvp by Molmil
E. fae Cas1-Cas2/prespacer/target ternary complex revealing the fully integrated states
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (5'-D(P*TP*TP*CP*TP*CP*CP*GP*AP*G)-3'), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2022-10-12
Method:X-RAY DIFFRACTION (3 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
8IVY
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BU of 8ivy by Molmil
Beta-Glucosidase BglA mutant E166Q in complex with glucose
Descriptor: Beta-glucosidase, GLYCEROL, beta-D-glucopyranose
Authors:Dong, S, Xiao, Y, Feng, Y.
Deposit date:2023-03-29
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Key roles of beta-glucosidase BglA for the catabolism of both laminaribiose and cellobiose in the lignocellulolytic bacterium Clostridium thermocellum.
Int.J.Biol.Macromol., 250, 2023
7WNV
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BU of 7wnv by Molmil
Crystal structure of mutant estrogen receptor alpha Y537S in complex with CO9
Descriptor: (~{Z})-4-[2-[4-[[2-(4-hydroxyphenyl)-6-oxidanyl-1-benzothiophen-3-yl]oxy]phenoxy]ethylamino]-~{N},~{N}-dimethyl-but-2-enamide, Estrogen receptor
Authors:Xiao, Y, Lv, Y.
Deposit date:2022-01-19
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray crystallography study and optimization of novel benzothiophene analogs as potent selective estrogen receptor covalent antagonists (SERCAs) with improved potency and safety profiles.
Bioorg.Chem., 141, 2023

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PDB entries from 2024-03-27

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