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2Z8F
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-TETRAOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
4JAW
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CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM COMPLEXED WITH LNB-THIAZOLINE
Descriptor:Lacto-N-biosidase, BETA-D-GALACTOSE, 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, ...
Authors:Ito, T., Katayama, T., Stubbs, K.A., Fushinobu, S.
Deposit date:2013-02-19
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
5BXP
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LNBASE IN COMPLEX WITH LNB-LOGNAC
Descriptor:Lacto-N-biosidase, BETA-D-GALACTOSE, LOGNAC, ...
Authors:Ito, T., Arakawa, T., Fushinobu, S.
Deposit date:2015-06-09
Release date:2015-09-09
Last modified:2015-10-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5BXR
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LNBASE IN COMPLEX WITH LNB-NHACDNJ
Descriptor:Lacto-N-biosidase, BETA-D-GALACTOSE, 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN, ...
Authors:Ito, T., Arakawa, T., Fushinobu, S.
Deposit date:2015-06-09
Release date:2015-09-09
Last modified:2015-10-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5BXS
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LNBASE IN COMPLEX WITH LNB-NHACCAS
Descriptor:Lacto-N-biosidase, BETA-D-GALACTOSE, 6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE, ...
Authors:Ito, T., Arakawa, T., Fushinobu, S.
Deposit date:2015-06-09
Release date:2015-09-09
Last modified:2015-10-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5BXT
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LNBASE IN COMPLEX WITH LNB-NHACAUS
Descriptor:Lacto-N-biosidase, SULFATE ION, N-{[(1R,2R,3R,7S,7aR)-1,2,7-trihydroxyhexahydro-1H-pyrrolizin-3-yl]methyl}acetamide, ...
Authors:Ito, T., Arakawa, T., Fushinobu, S.
Deposit date:2015-06-09
Release date:2015-09-09
Last modified:2015-10-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis
Chem.Commun.(Camb.), 51, 2015
5AVE
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THE LIGAND BINDING DOMAIN OF MLP37 WITH SERINE
Descriptor:Methyl-accepting chemotaxis (MCP) signaling domain protein, SERINE
Authors:Takahashi, Y., Sumita, K., Uchida, Y., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2015-06-15
Release date:2016-03-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5AVF
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THE LIGAND BINDING DOMAIN OF MLP37 WITH TAURINE
Descriptor:Methyl-accepting chemotaxis (MCP) signaling domain protein, 2-AMINOETHANESULFONIC ACID
Authors:Takahashi, Y., Sumita, K., Uchida, Y., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2015-06-15
Release date:2016-06-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5B4H
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CRYSTAL STRUCTURE OF I86D MUTANT OF PHYCOCYANOBILIN:FERREDOXIN OXIDOREDUCTASE IN COMPLEX WITH BILIVERDIN (DATA 1)
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, BILIVERDINE IX ALPHA
Authors:Hagiwara, Y., Wada, K., Irikawa, T., Unno, M., Fukuyama, K., Sugishima, M.
Deposit date:2016-04-04
Release date:2017-03-15
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Atomic-resolution structure of the phycocyanobilin:ferredoxin oxidoreductase I86D mutant in complex with fully protonated biliverdin
FEBS Lett., 590, 2016
5B4I
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CRYSTAL STRUCTURE OF I86D MUTANT OF PHYCOCYANOBILIN:FERREDOXIN OXIDOREDUCTASE IN COMPLEX WITH BILIVERDIN (DATA 2)
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, BILIVERDINE IX ALPHA
Authors:Hagiwara, Y., Wada, K., Irikawa, T., Unno, M., Fukuyama, K., Sugishima, M.
Deposit date:2016-04-04
Release date:2017-03-15
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Atomic-resolution structure of the phycocyanobilin:ferredoxin oxidoreductase I86D mutant in complex with fully protonated biliverdin
FEBS Lett., 590, 2016
5B4J
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CRYSTAL STRUCTURE OF I86D MUTANT OF PHYCOCYANOBILIN:FERREDOXIN OXIDOREDUCTASE IN COMPLEX WITH BILIVERDIN (DATA 3)
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, BILIVERDINE IX ALPHA
Authors:Hagiwara, Y., Wada, K., Irikawa, T., Unno, M., Fukuyama, K., Sugishima, M.
Deposit date:2016-04-04
Release date:2017-03-15
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Atomic-resolution structure of the phycocyanobilin:ferredoxin oxidoreductase I86D mutant in complex with fully protonated biliverdin
FEBS Lett., 590, 2016
2D1V
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CRYSTAL STRUCTURE OF DNA-BINDING DOMAIN OF BACILLUS SUBTILIS YYCF
Descriptor:Transcriptional regulatory protein yycF
Authors:Okajima, T., Okada, A., Watanabe, T., Yamamoto, K., Tanizawa, K., Utsumi, R.
Deposit date:2005-09-01
Release date:2006-09-12
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif
Febs Lett., 582, 2008
2D4D
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THE CRYSTAL STRUCTURE OF HUMAN BETA2-MICROGLOBULIN, L39W W60F W95F MUTANT
Descriptor:Beta-2-microglobulin, SODIUM ION
Authors:Iwata, K., Matsuura, T., Nakagawa, A., Goto, Y.
Deposit date:2005-10-17
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformation of Amyloid Fibrils of beta2-Microglobulin Probed by Tryptophan Mutagenesis
J.Biol.Chem., 281, 2006
2D4F
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THE CRYSTAL STRUCTURE OF HUMAN BETA2-MICROGLOBULIN
Descriptor:Beta-2-microglobulin, SODIUM ION
Authors:Iwata, K., Matsuura, T., Nakagawa, A., Goto, Y.
Deposit date:2005-10-18
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conformation of Amyloid Fibrils of beta2-Microglobulin Probed by Tryptophan Mutagenesis
J.Biol.Chem., 281, 2006
3WCR
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CRYSTAL STRUCTURE OF PLANT LECTIN (LIGAND-FREE FORM)
Descriptor:Erythroagglutinin, N-ACETYL-D-GLUCOSAMINE, BROMIDE ION
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2013-05-31
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
3WCS
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CRYSTAL STRUCTURE OF PLANT LECTIN (LIGAND-BOUND FORM)
Descriptor:Erythroagglutinin, N-ACETYL-D-GLUCOSAMINE, MANGANESE (II) ION, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2013-05-31
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
3WOG
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CRYSTAL STRUCTURE PLANT LECTIN IN COMPLEX WITH LIGAND
Descriptor:Erythroagglutinin, N-ACETYL-D-GLUCOSAMINE, MANGANESE (II) ION, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2013-12-26
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold
Glycobiology, 24, 2014
2VSR
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 9-(S)-HODE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (9S,10E,12Z)-9-hydroxyoctadeca-10,12-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-04-29
Release date:2008-08-19
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VST
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 13-(S)-HODE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-04-29
Release date:2008-08-19
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV0
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DHA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV1
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-HDHA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (4S,5E,7Z,10Z,13Z,16Z,19Z)-4-hydroxydocosa-5,7,10,13,16,19-hexaenoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV2
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 5-HEPA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (5R,6E,8Z,11Z,14Z,17Z)-5-hydroxyicosa-6,8,11,14,17-pentaenoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV3
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-OXODHA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19-pentaenoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural Basis for the Activation of Ppargamma by Oxidized Fatty Acids.
Nat.Struct.Mol.Biol., 15, 2008
2VV4
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 6-OXOOTE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (8R,9Z,12Z)-8-hydroxy-6-oxooctadeca-9,12-dienoic acid, (8E,10S,12Z)-10-hydroxy-6-oxooctadeca-8,12-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2K86
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SOLUTION STRUCTURE OF FOXO3A FORKHEAD DOMAIN
Descriptor:Forkhead box protein O3
Authors:Wang, F., Marshall, C.B., Li, G., Plevin, M.J., Ikura, M.
Deposit date:2008-09-02
Release date:2008-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Biochemical and structural characterization of an intramolecular interaction in FOXO3a and its binding with p53.
J.Mol.Biol., 384, 2008