Author results

1K50
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A V49A MUTATION INDUCES 3D DOMAIN SWAPPING IN THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS
Descriptor:Protein L
Authors:O'Neill, J.W., Kim, D.E., Johnsen, K., Baker, D., Zhang, K.Y.J.
Deposit date:2001-10-09
Release date:2001-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.
Structure, 9, 2001
1K51
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A G55A MUTATION INDUCES 3D DOMAIN SWAPPING IN THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS
Descriptor:Protein L, ZINC ION
Authors:O'Neill, J.W., Kim, D.E., Johnsen, K., Baker, D., Zhang, K.Y.J.
Deposit date:2001-10-09
Release date:2001-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.
Structure, 9, 2001
1K52
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MONOMERIC PROTEIN L B1 DOMAIN WITH A K54G MUTATION
Descriptor:Protein L, ZINC ION
Authors:O'Neill, J.W., Kim, D.E., Johnsen, K., Baker, D., Zhang, K.Y.J.
Deposit date:2001-10-09
Release date:2001-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.
Structure, 9, 2001
1K53
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MONOMERIC PROTEIN L B1 DOMAIN WITH A G15A MUTATION
Descriptor:Protein L, ZINC ION
Authors:O'Neill, J.W., Kim, D.E., Johnsen, K., Baker, D., Zhang, K.Y.J.
Deposit date:2001-10-09
Release date:2001-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.
Structure, 9, 2001
1KH0
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ACCURATE COMPUTER BASE DESIGN OF A NEW BACKBONE CONFORMATION IN THE SECOND TURN OF PROTEIN L
Descriptor:protein L
Authors:O'Neill, J.W., Kuhlman, B., Kim, D.E., Zhang, K.Y., Baker, D.
Deposit date:2001-11-28
Release date:2002-01-23
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Accurate computer-based design of a new backbone conformation in the second turn of protein L.
J.Mol.Biol., 315, 2002
1MHX
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CRYSTAL STRUCTURES OF THE REDESIGNED PROTEIN G VARIANT NUG1
Descriptor:immunoglobulin-binding protein G
Authors:Nauli, S., Kuhlman, B., Le Trong, I., Stenkamp, R.E., Teller, D.C., Baker, D.
Deposit date:2002-08-21
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2
Protein Sci., 11, 2002
1MI0
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CRYSTAL STRUCTURE OF THE REDESIGNED PROTEIN G VARIANT NUG2
Descriptor:immunoglobulin-binding protein G
Authors:Nauli, S., Kuhlman, B., Le Trong, I., Stenkamp, R.E., Teller, D.C., Baker, D.
Deposit date:2002-08-21
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2
Biochemistry, 11, 2002
1MOW
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E-DREI
Descriptor:5'-D(*CP*CP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*AP*GP*TP*TP*CP*CP*GP*GP*CP*G)-3', 5'-D(*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*TP*GP*G)-3', chimera of homing endonuclease I-DmoI and DNA endonuclease I-CreI, ...
Authors:Chevalier, B.S., Kortemme, T., Chadsey, M.S., Baker, D., Monnat Jr., R.J., Stoddard, B.L.
Deposit date:2002-09-10
Release date:2002-11-29
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design, Activity and Structure of a Highly Specific Artificial Endonuclease
Mol.Cell, 10, 2002
1MPU
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CRYSTAL STRUCTURE OF THE FREE HUMAN NKG2D IMMUNORECEPTOR
Descriptor:NKG2-D type II integral membrane protein, PHOSPHATE ION
Authors:McFarland, B.J., Kortemme, T., Baker, D., Strong, R.K.
Deposit date:2002-09-12
Release date:2003-04-15
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Symmetry Recognizing Asymmetry: Analysis of the Interactions between the C-Type Lectin-like Immunoreceptor NKG2D and MHC Class I-like Ligands
Structure, 11, 2003
1PVH
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CRYSTAL STRUCTURE OF LEUKEMIA INHIBITORY FACTOR IN COMPLEX WITH GP130
Descriptor:Interleukin-6 receptor beta chain, Leukemia inhibitory factor, IODIDE ION
Authors:Boulanger, M.J., Bankovich, A.J., Kortemme, T., Baker, D., Garcia, K.C.
Deposit date:2003-06-27
Release date:2003-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Convergent mechanisms for recognition of divergent cytokines by the shared signaling receptor gp130.
Mol.Cell, 12, 2003
1QYS
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CRYSTAL STRUCTURE OF TOP7: A COMPUTATIONALLY DESIGNED PROTEIN WITH A NOVEL FOLD
Descriptor:TOP7
Authors:Kuhlman, B., Dantas, G., Ireton, G.C., Varani, G., Stoddard, B.L., Baker, D.
Deposit date:2003-09-11
Release date:2003-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
Science, 302, 2003
1UJZ
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CRYSTAL STRUCTURE OF THE E7_C/IM7_C COMPLEX; A COMPUTATIONALLY DESIGNED INTERFACE BETWEEN THE COLICIN E7 DNASE AND THE IM7 IMMUNITY PROTEIN
Descriptor:Designed Colicin E7 immunity protein, Designed Colicin E7 DNase
Authors:Kortemme, T., Joachimiak, L.A., Bullock, A.N., Schuler, A.D., Stoddard, B.L., Baker, D.
Deposit date:2003-08-13
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Computational redesign of protein-protein interaction specificity
NAT.STRUCT.MOL.BIOL., 11, 2004
2A3J
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STRUCTURE OF URNDESIGN, A COMPLETE COMPUTATIONAL REDESIGN OF HUMAN U1A PROTEIN
Descriptor:U1 small nuclear ribonucleoprotein A
Authors:Varani, G., Dobson, N., Dantas, G., Baker, D.
Deposit date:2005-06-24
Release date:2006-06-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:High-Resolution Structural Validation of the Computational Redesign of Human U1A Protein
Structure, 14, 2006
2ERH
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CRYSTAL STRUCTURE OF THE E7_G/IM7_G COMPLEX; A DESIGNED INTERFACE BETWEEN THE COLICIN E7 DNASE AND THE IM7 IMMUNITY PROTEIN
Descriptor:Colicin E7 immunity protein, Colicin E7
Authors:Joachimiak, L.A., Kortemme, T., Stoddard, B.L., Baker, D.
Deposit date:2005-10-24
Release date:2006-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Computational Design of a New Hydrogen Bond Network and at Least a 300-fold Specificity Switch at a Protein-Protein Interface.
J.Mol.Biol., 361, 2006
2GIY
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CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HSV-1 GE ECTODOMAIN
Descriptor:Glycoprotein E
Authors:Sprague, E.R., Wang, C., Baker, D., Bjorkman, P.J.
Deposit date:2006-03-29
Release date:2006-05-30
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging.
Plos Biol., 4, 2006
2GJ7
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CRYSTAL STRUCTURE OF A GE-GI/FC COMPLEX
Descriptor:Ig gamma-1 chain C region, Glycoprotein E, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Sprague, E.R., Wang, C., Baker, D., Bjorkman, P.J.
Deposit date:2006-03-30
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (5 Å)
Cite:Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging.
Plos Biol., 4, 2006
2KL8
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SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED FERREDOXIN-LIKE FOLD PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR15
Descriptor:OR15
Authors:Liu, G., Koga, N., Jiang, M., Koga, R., Xiao, R., Ciccosanti, C., Baker, D., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-06-30
Release date:2009-07-28
Last modified:2013-01-23
Method:SOLUTION NMR
Cite:Principles for designing ideal protein structures.
Nature, 491, 2012
2KPO
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SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED ROSSMANN 2X2 FOLD PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR16
Descriptor:rossmann 2x2 fold protein
Authors:Liu, G., Koga, R., Koga, N., Xiao, R., Hamilton, K., Ciccosanti, C., Acton, T.B., Baker, D., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-10-17
Release date:2009-12-01
Last modified:2012-06-13
Method:SOLUTION NMR
Cite:Solution NMR structure of denovo designed rossmann 2x2 fold protein, Northeast Structural Genomics Consortium target OR16
To be Published
2KW5
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SOLUTION NMR STRUCTURE OF THE SLR1183 PROTEIN FROM SYNECHOCYSTIS SP. PCC 6803, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SGR145
Descriptor:Slr1183 protein
Authors:Rossi, P., Forouhar, F., Lee, H., Lange, O., Mao, B., Lemak, A., Maglaqui, M., Belote, R., Ciccosanti, C., Foote, E., Sahdev, S., Acton, T., Xiao, R., Everett, J., Baker, D., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-03-31
Release date:2010-04-21
Last modified:2012-07-18
Method:SOLUTION NMR
Cite:Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.
Proc.Natl.Acad.Sci.USA, 109, 2012
2L15
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SOLUTION STRUCTURE OF COLD SHOCK PROTEIN CSPA USING COMBINED NMR AND CS-ROSETTA METHOD
Descriptor:Cold shock protein CspA
Authors:Tang, Y., Schneider, W.M., Shen, Y., Raman, S., Inouye, M., Baker, D., Roth, M.J., Montelione, G.T.
Deposit date:2010-07-22
Release date:2010-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Fully automated high-quality NMR structure determination of small (2)H-enriched proteins.
J Struct Funct Genomics, 11, 2010
2L82
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SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, P-LOOP NTPASE FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR32
Descriptor:DESIGNED PROTEIN OR32
Authors:Liu, G., Koga, N., Koga, R., Xiao, R., Hamilton, K., Janjua, H., Tong, S., Acton, T.B., Everett, J., Baker, D., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-12-31
Release date:2011-02-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Northeast Structural Genomics Consortium Target OR32
To be Published
2L9V
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NMR STRUCTURE OF THE FF DOMAIN L24A MUTANT'S FOLDING TRANSITION STATE
Descriptor:Pre-mRNA-processing factor 40 homolog A
Authors:Korzhnev, D.M., Vernon, R.M., Religa, T.L., Hansen, A., Baker, D., Fersht, A.R., Kay, L.E.
Deposit date:2011-02-24
Release date:2011-09-28
Last modified:2016-04-27
Method:SOLUTION NMR
Cite:Nonnative interactions in the FF domain folding pathway from an atomic resolution structure of a sparsely populated intermediate: an NMR relaxation dispersion study.
J.Am.Chem.Soc., 133, 2011
2LCI
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SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, P-LOOP NTPASE FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR36 (CASD TARGET)
Descriptor:Protein OR36
Authors:Liu, G., Koga, N., Koga, R., Xiao, R., Janjua, H., Ciccosanti, C., Lee, H., Acton, T.B., Everett, J., Baker, D., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-04-29
Release date:2011-06-29
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Northeast Structural Genomics Consortium Target OR36
To be Published
2LN3
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SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, IF3-LIKE FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR135 (CASD TARGET)
Descriptor:DE NOVO DESIGNED PROTEIN OR135
Authors:Liu, G., Koga, R., Koga, N., Xiao, R., Lee, H., Janjua, H., Kohan, E., Acton, T.B., Everett, J.K., Baker, D., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-12-15
Release date:2012-02-15
Last modified:2013-01-23
Method:SOLUTION NMR
Cite:Principles for designing ideal protein structures.
Nature, 491, 2012
2LND
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SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, PFK FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR134
Descriptor:DE NOVO DESIGNED PROTEIN, PFK fold
Authors:Liu, G., Koga, N., Koga, R., Xiao, R., Lee, H., Janjua, H., Kohan, E., Acton, T.B., Everett, J.K., Baker, D., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-12-23
Release date:2012-01-25
Method:SOLUTION NMR
Cite:Northeast Structural Genomics Consortium Target OR134
To be Published