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5K7X
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BU of 5k7x by Molmil
Fully ligated Adenylosuccinate Synthetase from Pyrococcus horikoshii OT3 with GTP, IMP and Hadacidin
Descriptor: Adenylosuccinate synthetase, GUANOSINE-5'-TRIPHOSPHATE, HADACIDIN, ...
Authors:Xie, Y, Cheng, Z.
Deposit date:2016-05-27
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3
To Be Published
1WS8
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BU of 1ws8 by Molmil
Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
Descriptor: COPPER (II) ION, GLYCEROL, mavicyanin
Authors:Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kunishige, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1WS7
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BU of 1ws7 by Molmil
Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
Descriptor: COPPER (I) ION, Mavicyanin
Authors:Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kataoka, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2018-07-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
2YVQ
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BU of 2yvq by Molmil
Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
Descriptor: Carbamoyl-phosphate synthase
Authors:Xie, Y, Ihsanawati, Kishishita, S, Murayama, K, Takemoto, C, Shirozu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-04-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
To be Published
2YY0
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BU of 2yy0 by Molmil
Crystal Structure of MS0802, c-Myc-1 binding protein domain from Homo sapiens
Descriptor: C-Myc-binding protein
Authors:Xie, Y, Wang, H, Ihsanawati, Kishishita, S, Takemoto, C, Shirozu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2008-04-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:crystal structure of c-Myc-1 binding protein domain from Homo sapiens
To be Published
2Z1B
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BU of 2z1b by Molmil
Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculs
Descriptor: Delta-aminolevulinic acid dehydratase
Authors:Xie, Y, Wang, H, Kawazoe, M, Kishishita, S, Murayama, K, Takemoto, C, Terada, T, Shirozu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-08
Release date:2008-05-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculs
To be Published
7LUV
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BU of 7luv by Molmil
Cryo-EM structure of the yeast THO-Sub2 complex
Descriptor: ATP-dependent RNA helicase SUB2, THO complex subunit 2, THO complex subunit HPR1, ...
Authors:Xie, Y, Ren, Y.
Deposit date:2021-02-23
Release date:2021-04-14
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2.
Elife, 10, 2021
8ENK
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BU of 8enk by Molmil
Crystal structure of UAP56 in complex with Tho1, the yeast homolog of human SARNP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Xie, Y, Ren, Y.
Deposit date:2022-09-30
Release date:2023-08-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for high-order complex of SARNP and DDX39B to facilitate mRNP assembly.
Cell Rep, 42, 2023
2D7U
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BU of 2d7u by Molmil
Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3
Descriptor: Adenylosuccinate synthetase
Authors:Xie, Y, Kishisita, S, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-11-29
Release date:2006-05-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3
To be Published
2DST
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BU of 2dst by Molmil
Crystal Structure Analysis of TT1977
Descriptor: Hypothetical protein TTHA1544
Authors:Xie, Y, Kishishita, S, Murayama, K, Shirouzu, M, Chen, L, Liu, Z.J, Wang, B.C, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-06
Release date:2007-01-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the minimized alpha/beta-hydrolase fold protein from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 63, 2007
2E7V
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BU of 2e7v by Molmil
Crystal structure of SEA domain of transmembrane protease from Mus musculus
Descriptor: Transmembrane protease
Authors:Xie, Y, Kishishita, S, Murayama, K, Hori-Takemoto, C, Shirozu, M, Yokoyama, S, Chen, L, Liu, Z.J, Wang, B.C, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-15
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure of SEA domain of transmembrane protease from Mus musculus
To be Published
2EAQ
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BU of 2eaq by Molmil
Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens
Descriptor: LIM domain only protein 7, NICKEL (II) ION
Authors:Xie, Y, Kishishita, S, Murayama, K, Takemoto, C, Shirozu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-31
Release date:2007-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens
To be Published
4ILE
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BU of 4ile by Molmil
Structure of human ADP-ribosylation factor-like 8A binding to GDP
Descriptor: ADP-ribosylation factor-like protein 8A, GUANOSINE-5'-DIPHOSPHATE
Authors:Xie, Y, Ren, J, Cheng, Z, Qian, H.
Deposit date:2012-12-31
Release date:2014-01-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.676 Å)
Cite:Structure of human ADP-ribosylation factor-like 8A binding to GDP
To be Published
5HTP
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BU of 5htp by Molmil
Putative sugar kinases from Synechococcus elongatus PCC7942 in complex with AMPPNP
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable sugar kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HU2
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BU of 5hu2 by Molmil
Sugar kinases from Synechococcus elongatus PCC7942-T11A
Descriptor: Probable sugar kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HTR
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BU of 5htr by Molmil
Putative sugar kinases from Arabidopsis thaliana in apo form
Descriptor: Putative xylulose kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HUX
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BU of 5hux by Molmil
Putative sugar kinases from Synechococcus elongatus PCC7942 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Probable sugar kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HTY
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BU of 5hty by Molmil
Sugar kinases from Synechococcus elongatus PCC7942-D221A
Descriptor: Probable sugar kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.815 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HTV
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BU of 5htv by Molmil
Putative sugar kinases from Arabidopsis thaliana in complex with AMPPNP
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Putative xylulose kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HTN
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BU of 5htn by Molmil
putative sugar kinases from Synechococcus elongatus PCC7942-apo form
Descriptor: Probable sugar kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HTJ
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BU of 5htj by Molmil
Putative sugar kinases from Synechococcus elongatus PCC7942-D8A
Descriptor: Probable sugar kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-26
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HV7
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BU of 5hv7 by Molmil
Putative sugar kinases from Synechococcus elongatus PCC7942 in complex with D-ribulose
Descriptor: D-ribulose, Probable sugar kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-28
Release date:2016-06-08
Last modified:2020-07-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5HTX
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BU of 5htx by Molmil
Putative sugar kinases from Arabidopsis thaliana in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Putative xylulose kinase
Authors:Xie, Y, Li, M, Chang, W.
Deposit date:2016-01-27
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.492 Å)
Cite:Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Plos One, 11, 2016
5ZYQ
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BU of 5zyq by Molmil
The Structure of Human PAF1/CTR9 complex
Descriptor: RNA polymerase-associated protein CTR9 homolog,RNA polymerase II-associated factor 1 homolog
Authors:Xie, Y, Zheng, M, Zhou, H, Long, J.
Deposit date:2018-05-28
Release date:2018-09-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.531 Å)
Cite:Paf1 and Ctr9 subcomplex formation is essential for Paf1 complex assembly and functional regulation.
Nat Commun, 9, 2018
5ZYP
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BU of 5zyp by Molmil
Structure of the Yeast Ctr9/Paf1 complex
Descriptor: NICKEL (II) ION, RNA polymerase-associated protein CTR9,RNA polymerase II-associated protein 1
Authors:Xie, Y, Zheng, M, Zhou, H, Long, J.
Deposit date:2018-05-28
Release date:2018-09-26
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.532 Å)
Cite:Paf1 and Ctr9 subcomplex formation is essential for Paf1 complex assembly and functional regulation.
Nat Commun, 9, 2018

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