Author results

3VPQ
  • Download 3vpq
  • View 3vpq
Molmil generated image of 3vpq
CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE IN COMPLEX WITH GLUTATHIONE
Descriptor:Glutathione S-transferase sigma, GLUTATHIONE, S-1,2-PROPANEDIOL, ...
Authors:Yamamoto, K., Higashiura, A., Nakagawa, A., Suzuki, M.
Deposit date:2012-03-08
Release date:2013-03-06
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830, 2013
3VU9
  • Download 3vu9
  • View 3vu9
Molmil generated image of 3vu9
CRYSTAL STRUCTURE OF PSY3-CSM2 COMPLEX
Descriptor:Platinum sensitivity protein 3, Chromosome segregation in meiosis protein 2, 1,2-ETHANEDIOL
Authors:Tawaramoto, M., Sasanuma, H., Hosaka, H., Lao, J.P., Sanda, E., Suzuki, M., Yamashita, E., Hunter, N., Shinohara, M., Nakagawa, A., Shinohara, A.
Deposit date:2012-06-23
Release date:2013-04-10
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A new protein complex promoting the assembly of Rad51 filaments
Nat Commun, 4, 2013
3WR2
  • Download 3wr2
  • View 3wr2
Molmil generated image of 3wr2
RNASE PO1 COMPLEXED WITH 3'GMP
Descriptor:Guanyl-specific ribonuclease Po1, GUANOSINE-3'-MONOPHOSPHATE
Authors:Hara, Y., Katsutani, T., Kobayashi, H., Suzuki, M.
Deposit date:2014-02-13
Release date:2015-02-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:RNase Po1 complexed with 3'GMP
to be published
4REL
  • Download 4rel
  • View 4rel
Molmil generated image of 4rel
CRYSTAL STRUCTURE OF UDP-GLUCOSE: ANTHOCYANIDIN 3-O-GLUCOSYLTRANSFERASE IN COMPLEX WITH KAEMPFEROL
Descriptor:UDP-glucose:anthocyanidin 3-O-glucosyltransferase, 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE, GLYCEROL, ...
Authors:Hiromoto, T., Honjo, E., Tamada, T., Kuroki, R.
Deposit date:2014-09-23
Release date:2015-01-21
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (1.754 Å)
Cite:Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea
Protein Sci., 24, 2015
1HI3
  • Download 1hi3
  • View 1hi3
Molmil generated image of 1hi3
EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE 2'-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-2'-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI4
  • Download 1hi4
  • View 1hi4
Molmil generated image of 1hi4
EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSIEN-3'-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI5
  • Download 1hi5
  • View 1hi5
Molmil generated image of 1hi5
EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1IU1
  • Download 1iu1
  • View 1iu1
Molmil generated image of 1iu1
CRYSTAL STRUCTURE OF HUMAN GAMMA1-ADAPTIN EAR DOMAIN
Descriptor:gamma1-adaptin
Authors:Nogi, T., Shiba, Y., Kawasaki, M., Shiba, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Takatsu, H., Nakayama, K., Wakatsuki, S.
Deposit date:2002-02-19
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain.
Nat.Struct.Biol., 9, 2002
3FI6
  • Download 3fi6
  • View 3fi6
Molmil generated image of 3fi6
APO-H49AFR WITH HIGH CONTENT OF PD IONS
Descriptor:Ferritin light chain, PALLADIUM ION, CADMIUM ION, ...
Authors:Abe, M., Ueno, T., Hirata, K., Suzuki, M., Abe, S., Shimizu, N., Yamaoto, M., Takata, M., Watanabe, Y.
Deposit date:2008-12-11
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Process of Accumulation of Metal Ions on the Interior Surface of apo-Ferritin: Crystal Structures of a Series of apo-Ferritins Containing Variable Quantities of Pd(II) Ions
J.Am.Chem.Soc., 131, 2009
3IIT
  • Download 3iit
  • View 3iit
Molmil generated image of 3iit
FACTOR XA IN COMPLEX WITH A CIS-1,2-DIAMINOCYCLOHEXANE DERIVATIVE
Descriptor:Activated factor Xa heavy chain, Factor X light chain, CALCIUM ION, ...
Authors:Suzuki, M.
Deposit date:2009-08-03
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design, synthesis, and SAR of cis-1,2-diaminocyclohexane derivatives as potent factor Xa inhibitors. Part II: exploration of 6-6 fused rings as alternative S1 moieties.
Bioorg.Med.Chem., 17, 2009
3TK6
  • Download 3tk6
  • View 3tk6
Molmil generated image of 3tk6
FACTOR XA IN COMPLEX WITH D46-5241
Descriptor:Factor X heavy chain, Factor X light chain, CALCIUM ION, ...
Authors:Suzuki, M., Mochizuki, A., Nagata, T., Takano, H., Kanno, H., Kishida, M., Ohta, T.
Deposit date:2011-08-25
Release date:2012-08-29
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Zwitter ionic potent durable orally active Factor Xa inhibitor.
To be Published
3V66
  • Download 3v66
  • View 3v66
Molmil generated image of 3v66
HUMAN SQUALENE SYNTHASE IN COMPLEX WITH 2-(1-{2-[(4R,6S)-8-CHLORO-6-(2,3-DIMETHOXYPHENYL)-4H,6H-PYRROLO[1,2-A][4,1]BENZOXAZEPIN-4-YL]ACETYL}-4-PIPERIDINYL)ACETIC ACID
Descriptor:Squalene synthase, PHOSPHATE ION, (1-{[(4R,6S)-8-chloro-6-(2,3-dimethoxyphenyl)-4H,6H-pyrrolo[1,2-a][4,1]benzoxazepin-4-yl]acetyl}piperidin-4-yl)acetic acid
Authors:Suzuki, M., Ohtsuka, M., Ohki, H., Haginoya, N., Itoh, M., Sugita, K., Usui, H., Ichikawa, M., Higashihashi, N.
Deposit date:2011-12-18
Release date:2012-12-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of novel tricyclic compounds as squalene synthase inhibitors
Bioorg.Med.Chem., 20, 2012
3VOT
  • Download 3vot
  • View 3vot
Molmil generated image of 3vot
CRYSTAL STRUCTURE OF L-AMINO ACID LIGASE FROM BACILLUS LICHENIFORMIS
Descriptor:L-amino acid ligase, BL00235, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Suzuki, M., Takahashi, Y., Noguchi, A., Arai, T., Yagasaki, M., Kino, K., Saito, J.
Deposit date:2012-02-08
Release date:2012-11-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of L-amino-acid ligase from Bacillus licheniformis
Acta Crystallogr.,Sect.D, 68, 2012
3VRO
  • Download 3vro
  • View 3vro
Molmil generated image of 3vro
CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C IN COMPLEX WITH PHOSPHO-SRC PEPTIDE
Descriptor:Signal transduction protein CBL-C, Proto-oncogene tyrosine-protein kinase Src, CALCIUM ION
Authors:Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VWV
  • Download 3vwv
  • View 3vwv
Molmil generated image of 3vwv
CRYSTAL STRUCTURE OF N-TERMINALLY TRUNCATED PEROXIREDOXIN 4 FROM M. MUSCULUS
Descriptor:Peroxiredoxin-4, PENTAETHYLENE GLYCOL, ACETIC ACID
Authors:Inaba, K., Suzuki, M.
Deposit date:2012-09-03
Release date:2013-09-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding
Sci Rep, 3, 2013
5WR9
  • Download 5wr9
  • View 5wr9
Molmil generated image of 5wr9
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5Y1A
  • Download 5y1a
  • View 5y1a
Molmil generated image of 5y1a
HBP35 OF PORPHYROMONAS GINGIVALIS
Descriptor:35 kDa hemin binding protein
Authors:Kakuda, S., Suzuki, M., Sato, K.
Deposit date:2017-07-20
Release date:2018-07-25
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.
Mol. Microbiol., 110, 2018
5ZYG
  • Download 5zyg
  • View 5zyg
Molmil generated image of 5zyg
CRYSTAL STRUCTURE OF CERT START DOMAIN IN COMPLEX WITH COMPOUND B5
Descriptor:LIPID-TRANSFER PROTEIN CERT, 2-[4-[3-~{tert}-butyl-5-(2-pyridin-2-ylethyl)phenyl]phenyl]sulfonylethanol
Authors:Suzuki, M., Nakao, N., Ueno, M., Sakai, S., Egawa, D., Hanzawa, H., Kawasaki, S., Kumagai, K., Kobayashi, S., Hanada, K.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT
Commun Chem, 2019
5ZYL
  • Download 5zyl
  • View 5zyl
Molmil generated image of 5zyl
CRYSTAL STRUCTURE OF CERT START DOMAIN IN COMPLEX WITH COMPOUND E25A
Descriptor:LIPID-TRANSFER PROTEIN CERT, 2-[4-[4-cyclopentyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol, GLYCEROL
Authors:Suzuki, M., Nakao, N., Ueno, M., Sakai, S., Egawa, D., Hanzawa, H., Kawasaki, S., Kumagai, K., Kobayashi, S., Hanada, K.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT
Commun Chem, 2019
6IF0
  • Download 6if0
  • View 6if0
Molmil generated image of 6if0
CRYSTAL STRUCTURE OF CERT START DOMAIN IN COMPLEX WITH COMPOUND D16
Descriptor:LIPID-TRANSFER PROTEIN CERT, 2-({4'-pentyl-3'-[(Z)-2-(pyridin-2-yl)ethenyl][1,1'-biphenyl]-4-yl}sulfonyl)ethan-1-ol
Authors:Suzuki, M., Nakao, N., Ueno, M., Sakai, S., Egawa, D., Hanzawa, H., Kawasaki, S., Kumagai, K., Kobayashi, S., Hanada, K.
Deposit date:2018-09-18
Release date:2019-02-27
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT
Commun Chem, 2019
6J0O
  • Download 6j0o
  • View 6j0o
Molmil generated image of 6j0o
CRYSTAL STRUCTURE OF CERT START DOMAIN IN COMPLEX WITH COMPOUND SC1
Descriptor:LIPID-TRANSFER PROTEIN CERT, 2-[4-[2-fluoranyl-5-[3-(6-methylpyridin-2-yl)-1~{H}-pyrazol-4-yl]phenyl]phenyl]sulfonylethanol, UNKNOWN ATOM OR ION
Authors:Suzuki, M., Nakao, N., Ueno, M., Sakai, S., Egawa, D., Hanzawa, H., Kawasaki, S., Kumagai, K., Kobayashi, S., Hanada, K.
Deposit date:2018-12-25
Release date:2019-02-27
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT
Commun Chem, 2019
6J81
  • Download 6j81
  • View 6j81
Molmil generated image of 6j81
CRYSTAL STRUCTURE OF CERT START DOMAIN IN COMPLEX WITH COMPOUND E14
Descriptor:LIPID-TRANSFER PROTEIN CERT, 2-[4-[4-propyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol
Authors:Suzuki, M., Nakao, N., Ueno, M., Sakai, S., Egawa, D., Hanzawa, H., Kawasaki, S., Kumagai, K., Kobayashi, S., Hanada, K.
Deposit date:2019-01-18
Release date:2019-02-27
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT
Commun Chem, 2019
3APQ
  • Download 3apq
  • View 3apq
Molmil generated image of 3apq
CRYSTAL STRUCTURE OF J-TRX1 FRAGMENT OF ERDJ5
Descriptor:DnaJ homolog subfamily C member 10
Authors:Inaba, K., Suzuki, M., Nagata, K.
Deposit date:2010-10-20
Release date:2011-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.
Mol.Cell, 41, 2011
3WC4
  • Download 3wc4
  • View 3wc4
Molmil generated image of 3wc4
CRYSTAL STRUCTURE OF UDP-GLUCOSE: ANTHOCYANIDIN 3-O-GLUCOSYLTRANSFERASE FROM CLITORIA TERNATEA
Descriptor:UDP-glucose:anthocyanidin 3-O-glucosyltransferase, GLYCEROL, ACETATE ION
Authors:Hiromoto, T., Honjo, E., Tamada, T., Kuroki, R.
Deposit date:2013-05-24
Release date:2013-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of UDP-glucose:anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea
J.SYNCHROTRON RADIAT., 20, 2013
3WHO
  • Download 3who
  • View 3who
Molmil generated image of 3who
X-RAY-CRYSTALLOGRAPHIC STRUCTURE OF AN RNASE PO1 EXHIBITING ANTI-TUMOR ACTIVITY
Descriptor:Guanyl-specific ribonuclease Po1
Authors:Kobayashi, H., Katsurtani, T., Hara, Y., Motoyoshi, N., Itagaki, T., Akita, F., Higashiura, A., Yamada, Y., Suzuki, M., Inokuchi, N.
Deposit date:2013-08-30
Release date:2014-07-02
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-Ray Crystallographic Structure of RNase Po1 That Exhibits Anti-tumor Activity
Biol.Pharm.Bull., 37, 2014