Author results

4GA5
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE C-TERMINAL DELETION MUTANT IN THE APO-FORM
Descriptor:Putative thymidine phosphorylase
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4GA6
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE C-TERMINAL DELETION MUTANT IN COMPLEX WITH SUBSTRATES
Descriptor:Putative thymidine phosphorylase, ADENOSINE MONOPHOSPHATE, SULFATE ION
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4TWL
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CRYSTAL STRUCTURE OF DIOSCORIN COMPLEXED WITH ASCORBATE
Descriptor:Dioscorin 5, SULFATE ION, ASCORBIC ACID
Authors:Xue, Y.L., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2014-07-01
Release date:2015-04-01
Last modified:2015-08-05
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Yam Tuber Storage Protein Reduces Plant Oxidants Using the Coupled Reactions as Carbonic Anhydrase and Dehydroascorbate Reductase
Mol Plant, 8, 2015
4TWM
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CRYSTAL STRUCTURE OF DIOSCORIN FROM DIOSCOREA JAPONICA
Descriptor:Dioscorin 5, SULFATE ION
Authors:Xue, Y.L., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2014-07-01
Release date:2015-04-01
Last modified:2015-08-05
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Yam Tuber Storage Protein Reduces Plant Oxidants Using the Coupled Reactions as Carbonic Anhydrase and Dehydroascorbate Reductase
Mol Plant, 8, 2015
4WJ3
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CRYSTAL STRUCTURE OF THE ASPARAGINE TRANSAMIDOSOME FROM PSEUDOMONAS AERUGINOSA
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Glutamyl-tRNA(Gln) amidotransferase subunit C, ...
Authors:Suzuki, T., Nakamura, A., Kato, K., Tanaka, I., Yao, M.
Deposit date:2014-09-29
Release date:2014-12-31
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (3.705 Å)
Cite:Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis
Proc.Natl.Acad.Sci.USA, 112, 2015
4WJ4
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CRYSTAL STRUCTURE OF NON-DISCRIMINATING ASPARTYL-TRNA SYNTHETASE FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH TRNA(ASN) AND ASPARTIC ACID
Descriptor:Aspartate--tRNA(Asp/Asn) ligase, 76mer-tRNA, ASPARTIC ACID
Authors:Suzuki, T., Nakamura, A., Kato, K., Tanaka, I., Yao, M.
Deposit date:2014-09-29
Release date:2014-12-31
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (3.294 Å)
Cite:Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis
Proc.Natl.Acad.Sci.USA, 112, 2015
5GWR
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4-HYDROXYISOLEUCINE DEHYDROGENASE COMPLEXED WITH NADH
Descriptor:4-hydroxyisolecuine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, 1,2-ETHANEDIOL
Authors:Shi, X., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2016-09-13
Release date:2017-10-25
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2S,3R,4S)-4-hydroxyisoleucine with three asymmetric centers
Sci Rep, 7, 2017
5GWS
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4-HYDROXYISOLEUCINE DEHYDROGENASE COMPLEXED WITH NADH AND SUCCINATE
Descriptor:4-hydroxyisolecuine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SUCCINIC ACID
Authors:Shi, X., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2016-09-13
Release date:2017-10-25
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2S,3R,4S)-4-hydroxyisoleucine with three asymmetric centers.
Sci Rep, 7, 2017
5GWT
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4-HYDROXYISOLEUCINE DEHYDROGENASE MUTANT COMPLEXED WITH NADH AND SUCCINATE
Descriptor:4-hydroxyisolecuine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SUCCINIC ACID
Authors:Shi, X., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2016-09-13
Release date:2017-10-25
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2S,3R,4S)-4-hydroxyisoleucine with three asymmetric centers.
Sci Rep, 7, 2017
5H3E
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CRYSTAL STRUCTURE OF MOUSE ISOCITRATE DEHYDROGENASES 2 K256Q MUTANT COMPLEXED WITH ISOCITRATE
Descriptor:Isocitrate dehydrogenase [NADP], mitochondrial, MAGNESIUM ION, ...
Authors:Xu, Y., Liu, L., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2016-10-23
Release date:2017-08-30
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics
Sci Rep, 7, 2017
5H3F
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CRYSTAL STRUCTURE OF MOUSE ISOCITRATE DEHYDROGENASES 2 COMPLEXED WITH ISOCITRATE
Descriptor:Isocitrate dehydrogenase [NADP], mitochondrial, ISOCITRIC ACID, ...
Authors:Xu, Y., Liu, L., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2016-10-23
Release date:2017-08-30
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics
Sci Rep, 7, 2017
5WUT
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CRYSTAL STRUCTURE OF LAMINARINASE FROM FLAVOBACTERIUM SP. UMI-01
Descriptor:ULam111
Authors:Qin, H.M., Miyakawa, Y., Nakamura, A., Tanokura, M.
Deposit date:2016-12-21
Release date:2018-01-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of laminarinase from Flavobacterium sp. UMI-01
To Be Published
5XCY
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STRUCTURE OF THE CELLOBIOHYDROLASE CEL6A FROM PHANEROCHAETE CHRYSOSPORIUM AT 1.2 ANGSTROM
Descriptor:Glucanase
Authors:Tachioka, M., Nakamura, A., Ishida, T., Igarashi, K., Samejima, M.
Deposit date:2017-03-24
Release date:2017-07-26
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Crystal structure of a family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium
Acta Crystallogr F Struct Biol Commun, 73, 2017
5XCZ
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STRUCTURE OF THE CELLOBIOHYDROLASE CEL6A FROM PHANEROCHAETE CHRYSOSPORIUM IN COMPLEX WITH CELLOBIOSE AT 2.1 ANGSTROM
Descriptor:Glucanase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Tachioka, M., Nakamura, A., Ishida, T., Igarashi, K., Samejima, M.
Deposit date:2017-03-24
Release date:2017-07-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium
Acta Crystallogr F Struct Biol Commun, 73, 2017
5YP1
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, GLYCEROL
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP2
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH DPP4 INHIBITOR FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, (2S,5R)-1-[2-[[1-(hydroxymethyl)cyclopentyl]amino]ethanoyl]pyrrolidine-2,5-dicarbonitrile, GLYCEROL
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP3
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH ILE-PRO FROM PSEUDOXANTHOMONAS MEXICANA
Descriptor:Dipeptidyl aminopeptidase 4, ISOLEUCINE, PROLINE, ...
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP4
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH LYS-PRO FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, GLYCEROL, LYSINE, ...
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5ZD4
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CRYSTAL STRUCTURE OF MBP-FUSED BIL1/BZR1 IN COMPLEX WITH DOUBLE-STRANDED DNA
Descriptor:Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1, DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*GP*TP*GP*TP*GP*AP*AP*A)-3'), MALTOSE, ...
Authors:Nosaki, S., Miyakawa, T., Xu, Y., Nakamura, A., Hirabayashi, K., Tanokura, M.
Deposit date:2018-02-22
Release date:2018-08-29
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural basis for brassinosteroid response by BIL1/BZR1.
Nat Plants, 4, 2018
5ZL9
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ENGINEERED CHITINASE, SMCHIAB-FYSFV
Descriptor:Chitinase AB, GLYCEROL
Authors:Kawai, F., Nakamura, A., Iino, R.
Deposit date:2018-03-27
Release date:2018-07-11
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Engineered chitinase, SmChiAB-FYSFV
Acs Omega, 2018
4KSP
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CRYSTAL STRUCTURE OF HUMAN B-RAF BOUND TO A DFG-OUT INHIBITOR TAK-632
Descriptor:Serine/threonine-protein kinase B-raf, N-{7-cyano-6-[4-fluoro-3-({[3-(trifluoromethyl)phenyl]acetyl}amino)phenoxy]-1,3-benzothiazol-2-yl}cyclopropanecarboxamide
Authors:Yano, J.K., Masanori, O.
Deposit date:2013-05-17
Release date:2013-07-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Discovery of a Selective Kinase Inhibitor (TAK-632) Targeting Pan-RAF Inhibition: Design, Synthesis, and Biological Evaluation of C-7-Substituted 1,3-Benzothiazole Derivatives.
J.Med.Chem., 56, 2013
4KSQ
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CRYSTAL STRUCTURE OF HUMAN B-RAF BOUND TO A DFG-OUT INHIBITOR 5B
Descriptor:Serine/threonine-protein kinase B-raf, N-{7-cyano-6-[4-fluoro-3-({[3-(trifluoromethyl)phenyl]carbamoyl}amino)phenoxy]-1,3-benzothiazol-2-yl}cyclopropanecarboxamide
Authors:Yano, J.K., Masanori, O.
Deposit date:2013-05-17
Release date:2013-07-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Discovery of a Selective Kinase Inhibitor (TAK-632) Targeting Pan-RAF Inhibition: Design, Synthesis, and Biological Evaluation of C-7-Substituted 1,3-Benzothiazole Derivatives.
J.Med.Chem., 56, 2013
5X6B
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CRYSTAL STRUCTURE OF SEPCYSE-SEPCYSS IN COMPLEX WITH TRNACYS FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481, tRNACys
Authors:Chen, M., Kato, K., Yao, M.
Deposit date:2017-02-21
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2.596 Å)
Cite:Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun, 8, 2017
5X6C
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CRYSTAL STRUCTURE OF SEPRS-SEPCYSE FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:O-phosphoserine--tRNA(Cys) ligase, Uncharacterized protein MJ1481, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Chen, M., Kato, K., Yao, M.
Deposit date:2017-02-21
Release date:2017-12-06
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun, 8, 2017
3WDQ
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CRYSTAL STRUCTURE OF BETA-MANNANASE FROM A SYMBIOTIC PROTIST OF THE TERMITE RETICULITERMES SPERATUS
Descriptor:Beta-mannanase, N-ACETYL-D-GLUCOSAMINE, SODIUM ION, ...
Authors:Tsukagoshi, H., Ishida, T., Touhara, K.K., Igarashi, K., Samejima, M., Fushinobu, S., Kitamoto, K., Arioka, M.
Deposit date:2013-06-20
Release date:2014-03-05
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural and Biochemical Analyses of Glycoside Hydrolase Family 26 beta-Mannanase from a Symbiotic Protist of the Termite Reticulitermes speratus
J.Biol.Chem., 289, 2014