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3C0F
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CRYSTAL STRUCTURE OF A NOVEL NON-PFAM PROTEIN AF1514 FROM ARCHEOGLOBUS FULGIDUS DSM 4304 SOLVED BY S-SAD USING A CR X-RAY SOURCE
Descriptor:Uncharacterized protein AF_1514
Authors:Li, Y., Bahti, P., Shaw, N., Song, G., Yin, J., Zhu, J.-Y., Zhang, H., Xu, H., Wang, B.-C., Liu, Z.-J.
Deposit date:2008-01-20
Release date:2008-02-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source.
Proteins, 71, 2008
3CS8
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STRUCTURAL AND BIOCHEMICAL BASIS FOR THE BINDING SELECTIVITY OF PPARG TO PGC-1A
Descriptor:Peroxisome proliferator-activated receptor gamma, PGC-1alfa peptide, SULFATE ION, ...
Authors:Li, Y., Martynowski, D.
Deposit date:2008-04-09
Release date:2008-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and biochemical basis for the binding selectivity of peroxisome proliferator-activated receptor gamma to PGC-1alpha.
J.Biol.Chem., 283, 2008
3FF7
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STRUCTURE OF NK CELL RECEPTOR KLRG1 BOUND TO E-CADHERIN
Descriptor:Epithelial cadherin, Killer cell lectin-like receptor subfamily G member 1, ACETIC ACID
Authors:Li, Y., Mariuzza, R.A.
Deposit date:2008-12-02
Release date:2009-07-28
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of natural killer cell receptor KLRG1 bound to E-cadherin reveals basis for MHC-independent missing self recognition.
Immunity, 31, 2009
3FF8
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STRUCTURE OF NK CELL RECEPTOR KLRG1 BOUND TO E-CADHERIN
Descriptor:Epithelial cadherin, Killer cell lectin-like receptor subfamily G member 1, CALCIUM ION
Authors:Li, Y., Mariuzza, R.A.
Deposit date:2008-12-02
Release date:2009-07-28
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of natural killer cell receptor KLRG1 bound to E-cadherin reveals basis for MHC-independent missing self recognition.
Immunity, 31, 2009
3FF9
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STRUCTURE OF NK CELL RECEPTOR KLRG1
Descriptor:Killer cell lectin-like receptor subfamily G member 1
Authors:Li, Y., Mariuzza, R.A.
Deposit date:2008-12-02
Release date:2009-07-28
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of natural killer cell receptor KLRG1 bound to E-cadherin reveals basis for MHC-independent missing self recognition.
Immunity, 31, 2009
3IBP
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THE CRYSTAL STRUCTURE OF THE DIMERIZATION DOMAIN OF ESCHERICHIA COLI STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN MUKB
Descriptor:Chromosome partition protein mukB, AMMONIUM ION
Authors:Li, Y., Schoeffler, A.J., Berger, J.M., Oakley, M.G.
Deposit date:2009-07-16
Release date:2010-01-26
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.099 Å)
Cite:The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.
J.Mol.Biol., 395, 2010
3IWP
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CRYSTAL STRUCTURE OF HUMAN COPPER HOMEOSTASIS PROTEIN CUTC
Descriptor:Copper homeostasis protein cutC homolog
Authors:Li, Y., Du, J., Zhang, P., Ding, J.
Deposit date:2009-09-03
Release date:2009-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human copper homeostasis protein CutC reveals a potential copper-binding site
To be Published
3KTQ
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CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor:DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), PROTEIN (LARGE FRAGMENT OF DNA POLYMERASE I), ...
Authors:Li, Y., Waksman, G.
Deposit date:1998-07-28
Release date:1999-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
3L2O
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STRUCTURE-BASED MECHANISM OF DIMERIZATION-DEPENDENT UBIQUITINATION BY THE SCFFBX4 UBIQUITIN LIGASE
Descriptor:S-phase kinase-associated protein 1, F-box only protein 4
Authors:Li, Y., Hao, B.
Deposit date:2009-12-15
Release date:2010-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of dimerization-dependent ubiquitination by the SCF(Fbx4) ubiquitin ligase.
J.Biol.Chem., 285, 2010
3L6F
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STRUCTURE OF MHC CLASS II MOLECULE HLA-DR1 COMPLEXED WITH PHOSPHOPEPTIDE MART-1
Descriptor:HLA class II histocompatibility antigen, DR alpha chain, DRB1-1 beta chain, ...
Authors:Li, Y., Mariuzza, R.A.
Deposit date:2009-12-23
Release date:2010-05-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for the Presentation of Tumor-Associated MHC Class II-Restricted Phosphopeptides to CD4(+) T Cells.
J.Mol.Biol., 399, 2010
3M4J
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CRYSTAL STRUCTURE OF N-ACETYL-L-ORNITHINE TRANSCARBAMYLASE COMPLEXED WITH PALAO
Descriptor:N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y., Yu, X., Allewell, N.M., Tuchman, M., Shi, D.
Deposit date:2010-03-11
Release date:2010-07-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reversible Post-Translational Carboxylation Modulates the Enzymatic Activity of N-Acetyl-l-ornithine Transcarbamylase.
Biochemistry, 49, 2010
3M4N
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CRYSTAL STRUCTURE OF N-ACETYL-L-ORNITHINE TRANSCARBAMYLASE K302A MUTANT COMPLEXED WITH PALAO
Descriptor:N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y., Yu, X., Allewell, N.M., Tuchman, M., Shi, D.
Deposit date:2010-03-11
Release date:2010-07-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
Biochemistry, 49, 2010
3M5C
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CRYSTAL STRUCTURE OF N-ACETYL-L-ORNITHINE TRANSCARBAMYLASE K302E MUTANT COMPLEXED WITH PALAO
Descriptor:N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y., Yu, X., Allewell, N.M., Tuchman, M., Shi, D.
Deposit date:2010-03-12
Release date:2010-07-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
Biochemistry, 49, 2010
3M5D
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CRYSTAL STRUCTURE OF N-ACETYL-L-ORNITHINE TRANSCARBAMYLASE K302R MUTANT COMPLEXED WITH PALAO
Descriptor:N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y., Yu, X., Allewell, N.M., Tuchman, M., Shi, D.
Deposit date:2010-03-12
Release date:2010-07-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
Biochemistry, 49, 2010
3N54
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CRYSTAL STRUCTURE OF THE GERBC PROTEIN
Descriptor:Spore germination protein B3, SULFATE ION, CHLORIDE ION
Authors:Li, Y., Setlow, B., Setlow, P., Hao, B.
Deposit date:2010-05-24
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the GerBC Component of a Bacillus subtilis Spore Germinant Receptor.
J.Mol.Biol., 402, 2010
3PV6
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CRYSTAL STRUCTURE OF NKP30 BOUND TO ITS LIGAND B7-H6
Descriptor:Ig-like domain-containing protein DKFZp686O24166/DKFZp686I21167, Natural cytotoxicity triggering receptor 3, N-ACETYL-D-GLUCOSAMINE
Authors:Li, Y.
Deposit date:2010-12-06
Release date:2011-03-16
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the activating natural killer cell receptor NKp30 bound to its ligand B7-H6 reveals basis for tumor cell recognition in humans
to be published
3PV7
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CRYSTAL STRUCTURE OF NKP30 LIGAND B7-H6
Descriptor:Ig-like domain-containing protein DKFZp686O24166/DKFZp686I21167, N-ACETYL-D-GLUCOSAMINE
Authors:Li, Y.
Deposit date:2010-12-06
Release date:2011-03-16
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the activating natural killer cell receptor NKp30 bound to its ligand B7-H6 reveals basis for tumor cell recognition in humans
to be published
3Q98
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STRUCTURE OF YGEW ENCODED PROTEIN FROM E. COLI
Descriptor:transcarbamylase
Authors:Li, Y., Jing, Z., Yu, X., Allewell, N.M., Tuchman, M., Shi, D.
Deposit date:2011-01-07
Release date:2011-05-04
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.
Proteins, 79, 2011
4IOP
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CRYSTAL STRUCTURE OF NKP65 BOUND TO ITS LIGAND KACL
Descriptor:C-type lectin domain family 2 member A, Killer cell lectin-like receptor subfamily F member 2, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Li, Y.
Deposit date:2013-01-08
Release date:2013-07-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of NKp65 bound to its keratinocyte ligand reveals basis for genetically linked recognition in natural killer gene complex.
Proc.Natl.Acad.Sci.USA, 110, 2013
4KTQ
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BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA
Descriptor:DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), PROTEIN (LARGE FRAGMENT OF DNA POLYMERASE I)
Authors:Li, Y., Waksman, G.
Deposit date:1998-09-09
Release date:1999-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
4O8W
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CRYSTAL STRUCTURE OF THE GERD SPORE GERMINATION PROTEIN
Descriptor:Spore germination protein
Authors:Li, Y., Jin, K., Ghosh, S., Devarakonda, P., Carlson, K., Davis, A., Stewart, K., Cammett, E., Rossi, P.P., Setlow, B., Lu, M., Setlow, P., Hao, B.
Deposit date:2013-12-30
Release date:2014-03-19
Last modified:2014-04-23
Method:X-RAY DIFFRACTION (2.293 Å)
Cite:Structural and Functional Analysis of the GerD Spore Germination Protein of Bacillus Species.
J.Mol.Biol., 426, 2014
4XVJ
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STRUCTURE OF THE HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 ANTIGENIC 2 REGION 412-423 BOUND TO THE BROADLY NEUTRALIZING ANTIBODY HC33.1
Descriptor:HCV E2 antigen, antibody heavy chain variable domain, antibody light chain variable domain
Authors:Li, Y., Mariuzza, R.A.
Deposit date:2015-01-27
Release date:2015-03-11
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for penetration of the glycan shield of hepatitis C virus e2 glycoprotein by a broadly neutralizing human antibody.
J.Biol.Chem., 290, 2015
5VZT
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CRYSTAL STRUCTURE OF THE SKP1-FBXO31 COMPLEX
Descriptor:S-phase kinase-associated protein 1, F-box only protein 31, ZINC ION, ...
Authors:Li, Y., Jin, K., Hao, B.
Deposit date:2017-05-29
Release date:2018-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VZU
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CRYSTAL STRUCTURE OF THE SKP1-FBXO31-CYCLIN D1 COMPLEX
Descriptor:S-phase kinase-associated protein 1, F-box only protein 31, Cyclin D1, ...
Authors:Li, Y., Jin, K., Hao, B.
Deposit date:2017-05-29
Release date:2018-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YDA
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THE CRYSTAL STRUCTURE OF THE ACYL TRANSFERASE DOMAIN OF SPND
Descriptor:PKS
Authors:Li, Y., Qu, X.D., Zhou, J.H.
Deposit date:2017-09-12
Release date:2018-05-23
Method:X-RAY DIFFRACTION (2.353 Å)
Cite:Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl., 57, 2018