Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1SMA
DownloadVisualize
BU of 1sma by Molmil
CRYSTAL STRUCTURE OF A MALTOGENIC AMYLASE
Descriptor: MALTOGENIC AMYLASE
Authors:Kim, J.S, Cha, S.S, Oh, B.H.
Deposit date:1999-04-21
Release date:2000-04-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a maltogenic amylase provides insights into a catalytic versatility.
J.Biol.Chem., 274, 1999
1T6S
DownloadVisualize
BU of 1t6s by Molmil
Crystal structure of a conserved hypothetical protein from Chlorobium tepidum
Descriptor: NITRATE ION, conserved hypothetical protein
Authors:Kim, J.S, Shin, D.H, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-05-07
Release date:2004-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning.
Proteins, 62, 2006
1YF2
DownloadVisualize
BU of 1yf2 by Molmil
Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications
Descriptor: Type I restriction-modification enzyme, S subunit
Authors:Kim, J.S, Degiovanni, A, Jancarik, J, Adams, P.D, Yokota, H.A, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-12-30
Release date:2005-02-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications.
Proc.Natl.Acad.Sci.USA, 102, 2005
5CHI
DownloadVisualize
BU of 5chi by Molmil
Crystal structure of PF2046 in complex with ssDNA
Descriptor: DNA (5'-D(P*TP*TP*TP*T)-3'), MAGNESIUM ION, Uncharacterized protein
Authors:Kim, J.S, Hwang, K.Y, Lee, W.C.
Deposit date:2015-07-10
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Structural basis of two-nucleotide removal of ssDNA by a cryptic RNase H fold 3'-5' exonuclease PF2046 from Pyrococcus furiosus
to be published
1R6V
DownloadVisualize
BU of 1r6v by Molmil
Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin
Descriptor: CALCIUM ION, subtilisin-like serine protease
Authors:Kim, J.S, Kluskens, L.D, de Vos, W.M, Huber, R, van der Oost, J.
Deposit date:2003-10-17
Release date:2004-10-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin.
J.Mol.Biol., 335, 2004
4WFQ
DownloadVisualize
BU of 4wfq by Molmil
Crystal structure of TFIIH subunit
Descriptor: GLYCEROL, SULFATE ION, Suppressor of stem-loop protein 1
Authors:Cho, Y, Kim, J.S, Lim, H.S.
Deposit date:2014-09-17
Release date:2015-02-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Rad3/XPD regulatory domain of Ssl1/p44
J.Biol.Chem., 290, 2015
4QA8
DownloadVisualize
BU of 4qa8 by Molmil
Crystal structure of LprF from Mycobacterium bovis
Descriptor: (2R)-2-(dodecanoyloxy)propyl (4E,6E,8E,10E,12E)-pentadeca-4,6,8,10,12-pentaenoate, Putative lipoprotein LprF
Authors:Ha, N.C, Jiao, L, Kim, J.S.
Deposit date:2014-05-02
Release date:2014-10-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure and functional implications of LprF from Mycobacterium tuberculosis and M. bovis
Acta Crystallogr.,Sect.D, 70, 2014
5C22
DownloadVisualize
BU of 5c22 by Molmil
Crystal structure of Zn-bound HlyD from E. coli
Descriptor: Chromosomal hemolysin D, ZINC ION
Authors:Ha, N.C, Kim, J.S.
Deposit date:2015-06-15
Release date:2016-02-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Crystal Structure of a Soluble Fragment of the Membrane Fusion Protein HlyD in a Type I Secretion System of Gram-Negative Bacteria
Structure, 24, 2016
5C21
DownloadVisualize
BU of 5c21 by Molmil
Crystal structure of native HlyD from E. coli
Descriptor: Chromosomal hemolysin D
Authors:Ha, N.C, Kim, J.S, Yoon, B.Y.
Deposit date:2015-06-15
Release date:2016-02-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of a Soluble Fragment of the Membrane Fusion Protein HlyD in a Type I Secretion System of Gram-Negative Bacteria
Structure, 24, 2016
5C0Q
DownloadVisualize
BU of 5c0q by Molmil
Crystal structure of Zn bound CbsA from Thermotoga neapolitana
Descriptor: Beta-N-acetylhexosaminidase, ZINC ION
Authors:Ha, N.C, Kim, J.S, Yoon, B.Y.
Deposit date:2015-06-12
Release date:2015-09-16
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Crystal structure of beta-N-acetylglucosaminidase CbsA from Thermotoga neapolitana
Biochem.Biophys.Res.Commun., 464, 2015
5BZA
DownloadVisualize
BU of 5bza by Molmil
Crystal structure of CbsA from Thermotoga neapolitana
Descriptor: Beta-N-acetylhexosaminidase, CADMIUM ION
Authors:Ha, N.C, Kim, J.S, Yoon, B.Y.
Deposit date:2015-06-11
Release date:2015-09-16
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Crystal structure of beta-N-acetylglucosaminidase CbsA from Thermotoga neapolitana
Biochem.Biophys.Res.Commun., 464, 2015
8I01
DownloadVisualize
BU of 8i01 by Molmil
Crystal structure of Escherichia coli glyoxylate carboligase
Descriptor: 2,3-DIMETHOXY-5-METHYL-1,4-BENZOQUINONE, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose
Int.J.Biol.Macromol., 253, 2023
8I08
DownloadVisualize
BU of 8i08 by Molmil
Crystal structure of Escherichia coli glyoxylate carboligase quadruple mutant
Descriptor: 2,3-DIMETHOXY-5-METHYL-1,4-BENZOQUINONE, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose
Int.J.Biol.Macromol., 253, 2023
8I05
DownloadVisualize
BU of 8i05 by Molmil
Crystal structure of Escherichia coli glyoxylate carboligase double mutant
Descriptor: 2,3-DIMETHOXY-5-METHYL-1,4-BENZOQUINONE, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose
Int.J.Biol.Macromol., 253, 2023
8I07
DownloadVisualize
BU of 8i07 by Molmil
Crystal structure of Escherichia coli glyoxylate carboligase double mutant in complex with glycolaldehyde
Descriptor: 2-oxidanylethanal, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose
Int.J.Biol.Macromol., 253, 2023
6J7H
DownloadVisualize
BU of 6j7h by Molmil
Crystal structure of blue fluorescent protein from metagenomic library
Descriptor: Blue fluorescent protein
Authors:Seo, P.W, Kim, J.S.
Deposit date:2019-01-18
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.309 Å)
Cite:Structure-Guided Generation of a Redox-Independent Blue Fluorescent Protein from mBFP.
J.Mol.Biol., 431, 2019
6J7U
DownloadVisualize
BU of 6j7u by Molmil
Crystal structure of blue fluorescent protein from metagenomic library in complex with NADPH
Descriptor: Blue fluorescent protein, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Seo, P.W, Kim, J.S.
Deposit date:2019-01-18
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Structure-Guided Generation of a Redox-Independent Blue Fluorescent Protein from mBFP.
J.Mol.Biol., 431, 2019
7CT6
DownloadVisualize
BU of 7ct6 by Molmil
Crystal structure of GCL from Deinococcus metallilatus
Descriptor: Glyoxylate carboligase
Authors:Kim, J.H, Kim, J.S.
Deposit date:2020-08-18
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Glyoxylate carboligase-based whole-cell biotransformation of formaldehyde into ethylene glycol via glycolaldehyde.
Green Chem, 1, 2022
7EEW
DownloadVisualize
BU of 7eew by Molmil
Crystal structure of the intact MTase from Vibrio vulnificus YJ016 in complex with the DNA-mimicking Ocr protein and the S-adenosyl-L-homocysteine (SAH)
Descriptor: Overcome classical restriction gp0.3, S-ADENOSYL-L-HOMOCYSTEINE, Type I restriction-modification system methyltransferase subunit
Authors:Seo, P.W, Park, S.Y, Kim, J.S.
Deposit date:2021-03-19
Release date:2022-03-23
Last modified:2022-07-13
Method:X-RAY DIFFRACTION (2.896 Å)
Cite:Structural features of a minimal intact methyltransferase of a type I restriction-modification system.
Int.J.Biol.Macromol., 208, 2022
4Z85
DownloadVisualize
BU of 4z85 by Molmil
Crystal structur of Pseudomonas fluorescens 2-nitrobenzoate 2-nitroreductase NbaA
Descriptor: 2-nitrobenzoate nitroreductase
Authors:Ha, N.C, Jiao, L, Kim, J.S.
Deposit date:2015-04-08
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Mechanistic Insights into the Pseudomonas fluorescens 2-Nitrobenzoate 2-Nitroreductase NbaA
Appl.Environ.Microbiol., 81, 2015
6AE3
DownloadVisualize
BU of 6ae3 by Molmil
Crystal structure of GSK3beta complexed with Morin
Descriptor: 2-[2,4-bis(oxidanyl)phenyl]-3,5,7-tris(oxidanyl)chromen-4-one, GLYCEROL, Glycogen synthase kinase-3 beta
Authors:Kim, K.L, Cha, J.S, Kim, J.S, Ahn, J.S, Ha, N.C, Cho, H.S.
Deposit date:2018-08-03
Release date:2018-09-19
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Crystal structure of GSK3 beta in complex with the flavonoid, morin
Biochem. Biophys. Res. Commun., 504, 2018
7BVB
DownloadVisualize
BU of 7bvb by Molmil
Crystal structure of UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Mycobacterium bovis in complex with UDP-N-acetylglucosamine
Descriptor: UDP-N-acetylmuramate--L-alanine ligase, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE, ZINC ION
Authors:Seo, P.W, Kim, J.S.
Deposit date:2020-04-10
Release date:2020-04-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.191 Å)
Cite:Crystal structures of UDP-N-acetylmuramic acid L-alanine ligase (MurC) from Mycobacterium bovis with and without UDP-N-acetylglucosamine.
Acta Crystallogr D Struct Biol, 77, 2021
7BVA
DownloadVisualize
BU of 7bva by Molmil
Crystal structure of UDP-N-acetylmuramic Acid L-alanine ligase (MurC) from Mycobacterium bovis
Descriptor: UDP-N-acetylmuramate--L-alanine ligase, ZINC ION
Authors:Seo, P.W, Kim, J.S.
Deposit date:2020-04-10
Release date:2020-04-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Crystal structures of UDP-N-acetylmuramic acid L-alanine ligase (MurC) from Mycobacterium bovis with and without UDP-N-acetylglucosamine.
Acta Crystallogr D Struct Biol, 77, 2021
5GUS
DownloadVisualize
BU of 5gus by Molmil
Crystal structure of ASCH domain from Zymomonas mobilis
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, CHLORIDE ION, Helix-turn-helix domain-containing protein, ...
Authors:Ha, S.C, Park, S.Y, Kim, J.S.
Deposit date:2016-08-31
Release date:2017-08-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017
5GUQ
DownloadVisualize
BU of 5guq by Molmil
Crystal structure of ASCH from Zymomonas mobilis
Descriptor: Helix-turn-helix domain-containing protein
Authors:Ha, S.C, Park, S.Y, Kim, J.S.
Deposit date:2016-08-30
Release date:2017-08-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA.
Sci Rep, 7, 2017

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon