Author results

3U13
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CRYSTAL STRUCTURE OF DE NOVO DESIGN OF CYSTEIN ESTERASE ECH13 AT THE RESOLUTION 1.6A, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR51
Descriptor:artificial protein OR51, PHOSPHATE ION, MAGNESIUM ION, ...
Authors:Kuzin, A., Su, M., Seetharaman, J., Sahdev, S., Xiao, R., Kohan, E., Richter, F., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-09-29
Release date:2011-11-23
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.
J.Am.Chem.Soc., 134, 2012
3U1O
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THREE DIMENSIONAL STRUCTURE OF DE NOVO DESIGNED CYSTEINE ESTERASE ECH19, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR49
Descriptor:De Novo design cysteine esterase ECH19, SULFATE ION, SODIUM ION
Authors:Kuzin, A., Su, M., Lew, S., Forouhar, F., Seetharaman, J., Daya, P., Xiao, R., Ciccosanti, C., Richter, F., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-09-30
Release date:2011-10-26
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.494 Å)
Cite:Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.
J.Am.Chem.Soc., 134, 2012
3UAK
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CRYSTAL STRUCTURE OF DE NOVO DESIGNED CYSTEINE ESTERASE ECH14, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR54
Descriptor:De Novo designed cysteine esterase ECH14
Authors:Kuzin, A., Su, M., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Richter, F., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Baker, D., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-10-21
Release date:2011-12-07
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (3.232 Å)
Cite:Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.
J.Am.Chem.Soc., 134, 2012
4KY3
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THREE-DIMENSIONAL STRUCTURE OF THE ORTHORHOMBIC CRYSTAL OF COMPUTATIONALLY DESIGNED INSERTION DOMAIN , NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR327
Descriptor:designed protein OR327
Authors:Kuzin, A., Su, M., Seetharaman, J., Maglaqui, M., Xiao, R., Lee, D., Gleixner, J., Baker, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-05-28
Release date:2013-06-19
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (2.964 Å)
Cite:Precise assembly of complex beta sheet topologies from de novo designed building blocks.
Elife, 4, 2015
4KYZ
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THREE-DIMENSIONAL STRUCTURE OF TRICLINIC FORM OF DE NOVO DESIGN INSERTION DOMAIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR327
Descriptor:Designed protein OR327
Authors:Kuzin, A., Su, M., Seetharaman, J., Maglaqui, M., Xiao, R., Lee, D., Gleixner, J., Baker, D., Everett, J.K., Acton, T.B., Kornhaber, G., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-05-29
Release date:2013-07-24
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (2.492 Å)
Cite:Precise assembly of complex beta sheet topologies from de novo designed building blocks.
Elife, 4, 2015
4OYD
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CRYSTAL STRUCTURE OF A COMPUTATIONALLY DESIGNED INHIBITOR OF AN EPSTEIN-BARR VIRAL BCL-2 PROTEIN
Descriptor:Apoptosis regulator BHRF1, Computationally designed Inhibitor, 1,2-ETHANEDIOL
Authors:Shen, B., Procko, E., Baker, D., Stoddard, B.
Deposit date:2014-02-11
Release date:2014-07-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A computationally designed inhibitor of an epstein-barr viral bcl-2 protein induces apoptosis in infected cells.
Cell, 157, 2014
4UOS
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THERMODYNAMIC HYPERSTABILITY IN PARAMETRICALLY DESIGNED HELICAL BUNDLES
Descriptor:DESIGNED HELICAL BUNDLE
Authors:Oberdorfer, G., Huang, P., Pei, X.Y., Xu, C., Gonen, T., Nannenga, B., DiMaio, D., Rogers, J., Luisi, B.F., Baker, D.
Deposit date:2014-06-09
Release date:2014-11-05
Last modified:2016-12-14
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:High Thermodynamic Stability of Parametrically Designed Helical Bundles
Science, 346, 2014
4UOT
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THERMODYNAMIC HYPERSTABILITY IN PARAMETRICALLY DESIGNED HELICAL BUNDLES
Descriptor:DESIGNED HELICAL BUNDLE 5H2L
Authors:Oberdorfer, G., Huang, P., Pei, X.Y., Xu, C., Gonen, T., Nannenga, B., DiMaio, D., Rogers, J., Luisi, B.F., Baker, D.
Deposit date:2014-06-09
Release date:2014-11-05
Last modified:2014-11-19
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:High Thermodynamic Stability of Parametrically Designed Helical Bundles
Science, 346, 2014
5K7V
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COMPUTATIONAL DESIGN OF SELF-ASSEMBLING CYCLIC PROTEIN HOMOOLIGOMERS
Descriptor:Designed protein HR00C3
Authors:Sankaran, B., Zwart, P.H., Fallas, J.A., Pereira, J.H., Ueda, G., Baker, D.
Deposit date:2016-05-26
Release date:2017-04-12
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.165 Å)
Cite:Computational design of self-assembling cyclic protein homo-oligomers.
Nat Chem, 9, 2017
5KBA
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COMPUTATIONAL DESIGN OF SELF-ASSEMBLING CYCLIC PROTEIN HOMOOLIGOMERS
Descriptor:Designed protein ANK1C2
Authors:Sankaran, B., Zwart, P.H., Fallas, J.A., Pereira, J.H., Ueda, G., Baker, D.
Deposit date:2016-06-02
Release date:2017-04-12
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Computational design of self-assembling cyclic protein homo-oligomers.
Nat Chem, 9, 2017
5KWD
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COMPUTATIONALLY DESIGNED SYMMETRIC HOMOTETRAMER
Descriptor:Ankyrin repeat-containing protein
Authors:Fallas, J.A., Sankaran, B., Zwart, P., Baker, D.
Deposit date:2016-07-17
Release date:2017-04-12
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Computational design of self-assembling cyclic protein homo-oligomers.
Nat Chem, 9, 2017
5V2G
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DE NOVO DESIGN OF NOVEL COVALENT CONSTRAINED MESO-SIZE PEPTIDE SCAFFOLDS WITH UNIQUE TERTIARY STRUCTURES
Descriptor:20-mer Peptide, 1,3,5-tris(bromomethyl)benzene
Authors:Dang, B., Wu, H., Mulligan, V.K., Mravic, M., Wu, Y., Lemmin, T., Ford, A., Silva, D., Baker, D., DeGrado, W.F.
Deposit date:2017-03-03
Release date:2017-09-27
Last modified:2017-11-08
Method:SOLUTION NMR
Cite:De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V2O
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DE NOVO DESIGN OF NOVEL COVALENT CONSTRAINED MESO-SIZE PEPTIDE SCAFFOLDS WITH UNIQUE TERTIARY STRUCTURES
Descriptor:TP2, SULFATE ION, NONAETHYLENE GLYCOL, ...
Authors:Dang, B., Wu, H., Mulligan, V.K., Mravic, M., Wu, Y., Lemmin, T., Ford, A., Silva, D., Baker, D., DeGrado, W.F.
Deposit date:2017-03-06
Release date:2017-10-04
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6C2U
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SOLUTION STRUCTURE OF A PHOSPHATE-LOOP PROTEIN
Descriptor:phosphate-loop protein
Authors:Yang, F., Yang, W., Lin, Y.R., Romero Romero, M.L., Tawfik, D., Baker, D., Varani, G.
Deposit date:2018-01-09
Release date:2018-11-21
Last modified:2019-04-17
Method:SOLUTION NMR
Cite:Simple yet functional phosphate-loop proteins.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6C2V
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SOLUTION STRUCTURE OF A PHOSPHATE-LOOP PROTEIN
Descriptor:phosphate-loop protein
Authors:Yang, F., Yang, W., Lin, Y.R., Romero Romero, M.L., Tawfik, D., Baker, D., Varani, G.
Deposit date:2018-01-09
Release date:2018-11-21
Last modified:2019-04-17
Method:SOLUTION NMR
Cite:Simple yet functional phosphate-loop proteins.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DKM
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DHD131
Descriptor:DHD131_A, DHD131_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-05-29
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLC
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DESIGNED PROTEIN DHD1:234_A, DESIGNED PROTEIN DHD1:234_B
Descriptor:Designed protein DHD1:234_A, Designed protein DHD1:234_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-05-31
Release date:2018-12-26
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (3.261 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLM
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DHD127
Descriptor:DHD127_A, DHD127_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-06-01
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DM9
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DHD15_EXTENDED
Descriptor:DHD15_extended_A, DHD15_extended_B, SULFATE ION
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-06-04
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DMA
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DHD15_CLOSED
Descriptor:DHD15_closed_A, DHD15_closed_B
Authors:Bick, M.J., Chen, Z., Baker, D.
Deposit date:2018-06-04
Release date:2018-12-19
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (3.363 Å)
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
1HZ5
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CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION
Descriptor:PROTEIN L, ZINC ION
Authors:O'Neill, J.W., Kim, D.E., Baker, D., Zhang, K.Y.J.
Deposit date:2001-01-23
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.
Acta Crystallogr.,Sect.D, 57, 2001
1HZ6
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CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION
Descriptor:PROTEIN L
Authors:O'Neill, J.W., Kim, D.E., Baker, D., Zhang, K.Y.J.
Deposit date:2001-01-23
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.
Acta Crystallogr.,Sect.D, 57, 2001
1JML
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CONVERSION OF MONOMERIC PROTEIN L TO AN OBLIGATE DIMER BY COMPUTATIONAL PROTEIN DESIGN
Descriptor:Protein L, ZINC ION
Authors:O'Neill, J.W., Kuhlman, B., Kim, D.E., Zhang, K.Y.J., Baker, D.
Deposit date:2001-07-19
Release date:2001-10-10
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conversion of monomeric protein L to an obligate dimer by computational protein design.
Proc.Natl.Acad.Sci.USA, 98, 2001
1K50
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A V49A MUTATION INDUCES 3D DOMAIN SWAPPING IN THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS
Descriptor:Protein L
Authors:O'Neill, J.W., Kim, D.E., Johnsen, K., Baker, D., Zhang, K.Y.J.
Deposit date:2001-10-09
Release date:2001-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.
Structure, 9, 2001
1K51
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A G55A MUTATION INDUCES 3D DOMAIN SWAPPING IN THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS
Descriptor:Protein L, ZINC ION
Authors:O'Neill, J.W., Kim, D.E., Johnsen, K., Baker, D., Zhang, K.Y.J.
Deposit date:2001-10-09
Release date:2001-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.
Structure, 9, 2001