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1SKS
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BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
Descriptor:5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*C*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*(2DT))-3', 5'-D(*CP*CP*CP*(TTD)P*AP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', DNA polymerase, ...
Authors:Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.
Deposit date:2004-03-05
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7.
Nat.Struct.Mol.Biol., 11, 2004
1SKW
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BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE
Descriptor:5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*C*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*(2DT))-3', 5'-D(*CP*CP*CP*(TTD)P*AP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', DNA polymerase, ...
Authors:Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.
Deposit date:2004-03-05
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7.
Nat.Struct.Mol.Biol., 11, 2004
1SL0
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TERNARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
Descriptor:5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*(2DT))-3', 5'-D(*CP*CP*CP*(TTD)P*AP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', DNA polymerase, ...
Authors:Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.
Deposit date:2004-03-05
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7.
Nat.Struct.Mol.Biol., 11, 2004
1SL1
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BINARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
Descriptor:5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*TP*(2DA))-3', 5'-D(*CP*CP*C*(TTD)P*AP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', DNA polymerase, ...
Authors:Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.
Deposit date:2004-03-05
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7.
Nat.Struct.Mol.Biol., 11, 2004
1SL2
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TERNARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
Descriptor:5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*TP*(2DA))-3', 5'-D(*CP*CP*CP*(TTD)P*AP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', DNA polymerase, ...
Authors:Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.
Deposit date:2004-03-05
Release date:2004-07-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7.
Nat.Struct.Mol.Biol., 11, 2004
1VF6
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2.1 ANGSTROM CRYSTAL STRUCTURE OF THE PALS-1-L27N AND PATJ L27 HETERODIMER COMPLEX
Descriptor:PALS1-associated tight junction protein, MAGUK p55 subfamily member 5
Authors:Li, Y., Lavie, A., Margolis, B., Karnak, D.
Deposit date:2004-04-09
Release date:2004-04-20
Last modified:2016-12-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for L27 domain-mediated assembly of signaling and cell polarity complexes.
Embo J., 23, 2004
1WPA
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1.5 ANGSTROM CRYSTAL STRUCTURE OF HUMAN OCCLUDIN FRAGMENT 413-522
Descriptor:Occludin
Authors:Li, Y., Lavie, A., Fanning, A.S., Anderson, J.M.
Deposit date:2004-09-01
Release date:2005-09-06
Last modified:2014-09-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface.
J.Mol.Biol., 352, 2005
1XAW
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CRYSTAL STRUCTURE OF THE CYTOPLASMIC DISTAL C-TERMINAL DOMAIN OF OCCLUDIN
Descriptor:Occludin
Authors:Li, Y., Fanning, A.S., Anderson, J.M., Lavie, A.
Deposit date:2004-08-26
Release date:2005-09-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of the Conserved Cytoplasmic C-terminal Domain of Occludin: Identification of the ZO-1 Binding Surface.
J.Mol.Biol., 352, 2005
1XOO
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NMR STRUCTURE OF G1S MUTANT OF INFLUENZA HEMAGGLUTININ FUSION PEPTIDE IN DPC MICELLES AT PH 5
Descriptor:Hemagglutinin
Authors:Li, Y., Han, X., Lai, A.L., Bushweller, J.H., Cafiso, D.S., Tamm, L.K.
Deposit date:2004-10-06
Release date:2005-09-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Membrane structures of the hemifusion-inducing fusion peptide mutant G1S and the fusion-blocking mutant G1V of influenza virus hemagglutinin suggest a mechanism for pore opening in membrane fusion.
J.Virol., 79, 2005
1XOP
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NMR STRUCTURE OF G1V MUTANT OF INFLUENZA HEMAGGLUTININ FUSION PEPTIDE IN DPC MICELLES AT PH 5
Descriptor:Hemagglutinin
Authors:Li, Y., Han, X., Lai, A.L., Bushweller, J.H., Cafiso, D.S., Tamm, L.K.
Deposit date:2004-10-06
Release date:2005-09-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Membrane structures of the hemifusion-inducing fusion peptide mutant G1S and the fusion-blocking mutant G1V of influenza virus hemagglutinin suggest a mechanism for pore opening in membrane fusion.
J.Virol., 79, 2005
1YP0
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STRUCTURE OF THE STEROIDOGENIC FACTOR-1 LIGAND BINDING DOMAIN BOUND TO PHOSPHOLIPID AND A SHP PEPTIDE MOTIF
Descriptor:nuclear receptor subfamily 5, group A, member 1, ...
Authors:Li, Y., Choi, M., Cavey, G., Daugherty, J., Suino, K., Kovach, A., Bingham, N., Kliewer, S., Xu, H.
Deposit date:2005-01-28
Release date:2005-04-19
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic identification and functional characterization of phospholipids as ligands for the orphan nuclear receptor steroidogenic factor-1.
Mol.Cell, 17, 2005
1ZGY
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STRUCTURAL AND BIOCHEMICAL BASIS FOR SELECTIVE REPRESSION OF THE ORPHAN NUCLEAR RECEPTOR LRH-1 BY SHP
Descriptor:Peroxisome proliferator activated receptor gamma, Nuclear receptor subfamily 0, group B, ...
Authors:Li, Y., Choi, M., Suino, K., Kovach, A., Daugherty, J., Kliewer, S.A., Xu, H.E.
Deposit date:2005-04-22
Release date:2005-07-26
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and biochemical basis for selective repression of the orphan nuclear receptor liver receptor homolog 1 by small heterodimer partner.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZH7
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STRUCTURAL AND BIOCHEMICAL BASIS FOR SELECTIVE REPRESSION OF THE ORPHAN NUCLEAR RECEPTOR LRH-1 BY SHP
Descriptor:Orphan nuclear receptor NR5A2, nuclear receptor subfamily 0, group B, ...
Authors:Li, Y., Choi, M., Suino, K., Kovach, A., Daugherty, J., Kliewer, S.A., Xu, H.E.
Deposit date:2005-04-22
Release date:2005-08-02
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical basis for selective repression of the orphan nuclear receptor liver receptor homolog 1 by small heterodimer partner
Proc.Natl.Acad.Sci.USA, 102, 2005
2A3I
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STRUCTURAL AND BIOCHEMICAL MECHANISMS FOR THE SPECIFICITY OF HORMONE BINDING AND COACTIVATOR ASSEMBLY BY MINERALOCORTICOID RECEPTOR
Descriptor:Mineralocorticoid receptor, Nuclear receptor coactivator 1, residues 1430-1441, ...
Authors:Li, Y., Suino, K., Daugherty, J., Xu, H.E.
Deposit date:2005-06-24
Release date:2005-07-19
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and biochemical mechanisms for the specificity of hormone binding and coactivator assembly by mineralocorticoid receptor
Mol.Cell, 19, 2005
2FAT
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AN ANTI-UROKINASE PLASMINOGEN ACTIVATOR RECEPTOR (UPAR) ANTIBODY: CRYSTAL STRUCTURE AND BINDING EPITOPE
Descriptor:FAB ATN-615, light chain, heavy chain
Authors:Li, Y., Parry, G., Shi, X., Chen, L., Callahan, J.A., Mazar, A.P., Huang, M.
Deposit date:2005-12-07
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:An anti-urokinase plasminogen activator receptor (uPAR) antibody: crystal structure and binding epitope
J.Mol.Biol., 365, 2007
2FHT
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CRYSTAL STRUCTURE OF VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II
Descriptor:Viral macrophage inflammatory protein-II
Authors:Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.
Deposit date:2005-12-27
Release date:2006-12-26
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of chemically synthesized vMIP-II.
Proteins, 67, 2007
2FJ2
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CRYSTAL STRUCTURE OF VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II
Descriptor:Viral macrophage inflammatory protein-II
Authors:Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.
Deposit date:2005-12-30
Release date:2006-12-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of chemically synthesized vMIP-II.
Proteins, 67, 2007
2HQ4
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CRYSTAL STRUCTURE OF ORF 1580 A HYPOTHETICAL PROTEIN FROM PYROCOCCUS HORIKOSHII
Descriptor:Hypothetical protein PH1570
Authors:Li, Y., Marshall, M., Chang, J., Zhao, M., Zhang, M., Xu, H., Liu, Z.J., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2006-07-18
Release date:2006-09-19
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii
To be Published
2KTQ
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OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor:DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), PROTEIN (LARGE FRAGMENT OF DNA POLYMERASE I), ...
Authors:Li, Y., Waksman, G.
Deposit date:1998-07-30
Release date:1999-01-13
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
2LS1
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STRUCTURE OF SVICEUCIN, AN ANTIBACTERIAL TYPE I LASSO PEPTIDE FROM STREPTOMYCES SVICEUS
Descriptor:Uncharacterized protein
Authors:Li, Y., Ducasse, R., Blond, A., Zirah, S., Goulard, C., Lescop, E., Guittet, E., Pernodet, J., Rebuffat, S.
Deposit date:2012-04-18
Release date:2012-08-15
Method:SOLUTION NMR
Cite:Structure and biosynthesis of Sviceucin, an antibacterial type I lasso peptide from Streptomyces sviceus
To be Published
2MM4
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STRUCTURE OF A CONSERVED GOLGI COMPLEX-TARGETING SIGNAL IN CORONAVIRUS ENVELOPE PROTEINS
Descriptor:Envelope small membrane protein
Authors:Li, Y., Surya, W., Claudine, S., Torres, J.
Deposit date:2014-03-09
Release date:2014-04-02
Method:SOLUTION NMR
Cite:Structure of a Conserved Golgi Complex-targeting Signal in Coronavirus Envelope Proteins
J.Biol.Chem., 2014
2NB7
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SOLUTION STRUCTURE OF N-TERMINAL EXTRAMEMBRANE DOMAIN OF SH PROTEIN
Descriptor:Small hydrophobic protein
Authors:Li, Y., To, J., Surya, W., Torres, J.
Deposit date:2016-01-26
Release date:2016-02-17
Method:SOLUTION NMR
Cite:Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.
J.Virol., 88, 2014
2NB8
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SOLUTION STRUCTURE OF C-TERMINAL EXTRAMEMBRANE DOMAIN OF SH PROTEIN
Descriptor:Small hydrophobic protein
Authors:Li, Y., To, J., Surya, W., Torres, J.
Deposit date:2016-01-26
Release date:2016-02-17
Method:SOLUTION NMR
Cite:Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.
J.Virol., 88, 2014
2PJV
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SOLUTION STRUCTURE OF HIV-1 GP41 FUSION DOMAIN BOUND TO DPC MICELLE
Descriptor:Envelope glycoprotein
Authors:Li, Y., Tamm, L.K.
Deposit date:2007-04-16
Release date:2007-05-01
Last modified:2018-01-31
Method:SOLUTION NMR
Cite:Structure and Plasticity of the Human Immunodeficiency Virus gp41 Fusion Domain in Lipid Micelles and Bilayers.
Biophys.J., 93, 2007
2QM4
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CRYSTAL STRUCTURE OF HUMAN XLF/CERNUNNOS, A NON-HOMOLOGOUS END-JOINING FACTOR
Descriptor:Non-homologous end-joining factor 1
Authors:Li, Y., Chirgadze, D.Y., Sibanda, B.L., Bolanos-Garcia, V.M., Davies, O.R., Blundell, T.L.
Deposit date:2007-07-14
Release date:2007-12-11
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human XLF/Cernunnos reveals unexpected differences from XRCC4 with implications for NHEJ.
Embo J., 27, 2008