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1GCO
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BU of 1gco by Molmil
CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE COMPLEXED WITH NAD+
Descriptor: GLUCOSE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S.
Deposit date:2000-08-07
Release date:2001-02-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of glucose dehydrogenase from Bacillus megaterium IWG3 at 1.7 A resolution.
J.Biochem., 129, 2001
1GEE
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BU of 1gee by Molmil
Crystal structure of glucose dehydrogenase mutant Q252L complexed with NAD+
Descriptor: GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S.
Deposit date:2000-11-07
Release date:2003-08-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
1G6K
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BU of 1g6k by Molmil
Crystal structure of glucose dehydrogenase mutant E96A complexed with NAD+
Descriptor: GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S.
Deposit date:2000-11-06
Release date:2003-08-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
5H5L
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BU of 5h5l by Molmil
Structure of prostaglandin synthase D of Nilaparvata lugens
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLUTATHIONE, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, S, Nakagawa, A.
Deposit date:2016-11-07
Release date:2017-09-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Molecular structure of a prostaglandin D synthase requiring glutathione from the brown planthopper, Nilaparvata lugens
Biochem. Biophys. Res. Commun., 492, 2017
5AZ1
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BU of 5az1 by Molmil
Crystal structure of aldo-keto reductase (AKR2E5) complexed with NADPH
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
5AZ0
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BU of 5az0 by Molmil
Crystal structure of aldo-keto reductase (AKR2E5) of the silkworm, Bombyx mori
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
3AJ7
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BU of 3aj7 by Molmil
Crystal Structure of isomaltase from Saccharomyces cerevisiae
Descriptor: CALCIUM ION, Oligo-1,6-glucosidase
Authors:Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S.
Deposit date:2010-05-26
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structures of isomaltase from Saccharomyces cerevisiae and in complex with its competitive inhibitor maltose
Febs J., 277, 2010
3AXH
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BU of 3axh by Molmil
Crystal structure of isomaltase in complex with isomaltose
Descriptor: CALCIUM ION, Oligo-1,6-glucosidase IMA1, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose
Authors:Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S.
Deposit date:2011-04-06
Release date:2011-10-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Steric hindrance by 2 amino acid residues determines the substrate specificity of isomaltase from Saccharomyces cerevisiae
J.Biosci.Bioeng., 112, 2011
3AXI
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BU of 3axi by Molmil
Crystal structure of isomaltase in complex with maltose
Descriptor: CALCIUM ION, Oligo-1,6-glucosidase IMA1, alpha-D-glucopyranose
Authors:Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S.
Deposit date:2011-04-06
Release date:2011-10-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Steric hindrance by 2 amino acid residues determines the substrate specificity of isomaltase from Saccharomyces cerevisiae
J.Biosci.Bioeng., 112, 2011
3A4A
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BU of 3a4a by Molmil
Crystal structure of isomaltase from Saccharomyces cerevisiae
Descriptor: CALCIUM ION, Oligo-1,6-glucosidase, alpha-D-glucopyranose
Authors:Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S.
Deposit date:2009-07-01
Release date:2010-07-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of isomaltase from Saccharomyces cerevisiae and in complex with its competitive inhibitor maltose
Febs J., 277, 2010
3A47
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BU of 3a47 by Molmil
Crystal structure of isomaltase from Saccharomyces cerevisiae
Descriptor: CALCIUM ION, Oligo-1,6-glucosidase
Authors:Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S.
Deposit date:2009-07-01
Release date:2010-07-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal structure of isomaltase from Saccharomyces cerevisiae
To be Published
5X7Y
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BU of 5x7y by Molmil
Crystal Structure of the Dog Lipocalin Allergen Can f 6
Descriptor: DI(HYDROXYETHYL)ETHER, Lipocalin-Can f 6 allergen
Authors:Yamamoto, K, Otani, T, Sugiura, K, Nakatsuji, M, Nishimura, S, Inui, T.
Deposit date:2017-02-28
Release date:2018-04-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4.
Sci Rep, 9, 2019
7XHX
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BU of 7xhx by Molmil
Crystal structure of metallo-beta-lactamase IMP-6
Descriptor: Beta-lactamase, ZINC ION
Authors:Yamamoto, K, Tanaka, H, Kurisu, G, Nakano, R, Yano, H, Sakai, H.
Deposit date:2022-04-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-beta-lactamases.
J.Biochem., 173, 2022
7XHW
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BU of 7xhw by Molmil
Crystal structure of metallo-beta-lactamase IMP-1
Descriptor: Beta-lactamase, ZINC ION
Authors:Yamamoto, K, Tanaka, H, Kurisu, G, Nakano, R, Yano, H, Sakai, H.
Deposit date:2022-04-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-beta-lactamases.
J.Biochem., 173, 2022
3VPQ
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BU of 3vpq by Molmil
Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathione
Descriptor: DI(HYDROXYETHYL)ETHER, GLUTATHIONE, Glutathione S-transferase sigma, ...
Authors:Yamamoto, K, Higashiura, A, Nakagawa, A, Suzuki, M.
Deposit date:2012-03-08
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830, 2013
3VPT
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BU of 3vpt by Molmil
Crystal structure of Bombyx mori sigma-class glutathione transferase in apo form
Descriptor: DI(HYDROXYETHYL)ETHER, Glutathione S-transferase sigma, S-1,2-PROPANEDIOL, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2012-03-13
Release date:2013-03-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830, 2013
5ZFG
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BU of 5zfg by Molmil
Crystal structure of a diazinon-metabolizing glutathione S-transferase in the silkworm, Bombyx mori
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Glutathione S-transferase
Authors:Yamamoto, K, Higashiura, A, Nakagawa, A.
Deposit date:2018-03-06
Release date:2018-09-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterisation of a diazinon-metabolising glutathione S-transferase in the silkworm Bombyx mori by X-ray crystallography and genome editing analysis.
Sci Rep, 8, 2018
3VUR
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BU of 3vur by Molmil
Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathionesulfonic acid
Descriptor: GLUTATHIONE SULFONIC ACID, Glutathione S-transferase sigma, PENTAETHYLENE GLYCOL
Authors:Yamamoto, K, Higashiura, A, Nakagawa, A, Suzuki, M.
Deposit date:2012-07-05
Release date:2013-07-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.365 Å)
Cite:Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathionesulfonic acid
TO BE PUBLISHED
3WCZ
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BU of 3wcz by Molmil
Crystal structure of Bombyx mori aldo-keto reductase (AKR2E4) in complex with NADP
Descriptor: 1,2-ETHANEDIOL, Aldo-keto reductase 2E, CITRIC ACID, ...
Authors:Yamamoto, K, Wilson, D.K.
Deposit date:2013-06-05
Release date:2014-01-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Identification, characterization, and crystal structure of an aldo-keto reductase (AKR2E4) from the silkworm Bombyx mori.
Arch.Biochem.Biophys., 538, 2013
3WD6
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BU of 3wd6 by Molmil
Crystal structure of Bombyx mori omega-class glutathione transferase in complex with GSH
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLUTATHIONE, ...
Authors:Yamamoto, K, Suzuki, M, Higashiura, A, Nakagawa, A.
Deposit date:2013-06-07
Release date:2014-07-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of a Bombyx mori Omega-class glutathione transferase.
Biochem.Biophys.Res.Commun., 438, 2013
3WYW
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BU of 3wyw by Molmil
Structural characterization of catalytic site of a Nilaparvata lugens delta-class glutathione transferase
Descriptor: 1,2-ETHANEDIOL, GLUTATHIONE, Glutathione S-transferase
Authors:Yamamoto, K, Higashiura, A, Nakagawa, A.
Deposit date:2014-09-09
Release date:2015-01-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase.
Arch.Biochem.Biophys., 566C, 2014
6JXK
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BU of 6jxk by Molmil
Rb+-bound E2-MgF state of the gastric proton pump (Wild-type)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, MAGNESIUM ION, ...
Authors:Abe, K, Irie, K, Yamamoto, K.
Deposit date:2019-04-23
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:A single K + -binding site in the crystal structure of the gastric proton pump.
Elife, 8, 2019
6K0T
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BU of 6k0t by Molmil
Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-17
Descriptor: 3-[(1~{E})-1-[8-[(8-chloranyl-2-cyclopropyl-imidazo[1,2-a]pyridin-3-yl)methyl]-3-fluoranyl-6~{H}-benzo[c][1]benzoxepin-11-ylidene]ethyl]-4~{H}-1,2,4-oxadiazol-5-one, Peroxisome proliferator-activated receptor gamma, Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Authors:Suzuki, M, Yamamoto, K, Takahashi, Y, Saito, J.
Deposit date:2019-05-07
Release date:2019-10-30
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Development of a novel class of peroxisome proliferator-activated receptor (PPAR) gamma ligands as an anticancer agent with a unique binding mode based on a non-thiazolidinedione scaffold.
Bioorg.Med.Chem., 27, 2019
6AD9
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BU of 6ad9 by Molmil
Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-9
Descriptor: 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one, Peroxisome proliferator-activated receptor gamma
Authors:Takahashi, Y, Suzuki, M, Yamamoto, K, Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
3VK9
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BU of 3vk9 by Molmil
Crystal structure of delta-class glutathione transferase from silkmoth
Descriptor: GLYCEROL, Glutathione S-transferase delta
Authors:Kakuta, Y, Usuda, K, Higashiura, A, Suzuki, M, Nakagawa, A, Kimura, M, Yamamoto, K.
Deposit date:2011-11-10
Release date:2012-10-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta, 1820, 2012

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