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1A2B
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BU of 1a2b by Molmil
HUMAN RHOA COMPLEXED WITH GTP ANALOGUE
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, MAGNESIUM ION, TRANSFORMING PROTEIN RHOA
Authors:Ihara, K, Muraguchi, S, Kato, M, Shimizu, T, Shirakawa, M, Kuroda, S, Kaibuchi, K, Hakoshima, T.
Deposit date:1997-12-26
Release date:1998-06-17
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human RhoA in a dominantly active form complexed with a GTP analogue.
J.Biol.Chem., 273, 1998
1OCP
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BU of 1ocp by Molmil
SOLUTION STRUCTURE OF OCT3 POU-HOMEODOMAIN
Descriptor: OCT-3
Authors:Morita, E.H, Hayashi, F, Shirakawa, M, Kyogoku, Y.
Deposit date:1995-02-21
Release date:1995-09-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure of the Oct-3 POU-Homeodomain in Solution, as Determined by Triple Resonance Heteronuclear Multidimensional NMR Spectroscopy
Protein Sci., 4, 1995
8HFP
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BU of 8hfp by Molmil
Crystal structure of the methyl-CpG-binding domain of SETDB2 in complex with the cysteine-rich domain of C11orf46 protein
Descriptor: ARL14 effector protein, Histone-lysine N-methyltransferase SETDB2, SULFATE ION, ...
Authors:Mahana, Y, Ariyoshi, M, Shirakawa, M.
Deposit date:2022-11-11
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural Evidence for Protein Binding by the Methyl-CpG-Binding Domain of SETDB Proteins
To Be Published
3ASK
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BU of 3ask by Molmil
Structure of UHRF1 in complex with histone tail
Descriptor: E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ZINC ION
Authors:Arita, K, Sugita, K, Unoki, M, Hamamoto, R, Sekiyama, N, Tochio, H, Ariyoshi, M, Shirakawa, M.
Deposit date:2010-12-16
Release date:2012-01-25
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (2.904 Å)
Cite:Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
Proc.Natl.Acad.Sci.USA, 109, 2012
3ASL
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BU of 3asl by Molmil
Structure of UHRF1 in complex with histone tail
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ...
Authors:Arita, K, Sugita, K, Unoki, M, Hamamoto, R, Sekiyama, N, Tochio, H, Ariyoshi, M, Shirakawa, M.
Deposit date:2010-12-16
Release date:2012-01-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
Proc.Natl.Acad.Sci.USA, 109, 2012
1D9N
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BU of 1d9n by Molmil
SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1
Descriptor: METHYL-CPG-BINDING PROTEIN MBD1
Authors:Ohki, I, Shimotake, N, Fujita, N, Nakao, M, Shirakawa, M.
Deposit date:1999-10-28
Release date:2000-10-28
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD1.
EMBO J., 18, 1999
1ED7
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BU of 1ed7 by Molmil
SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1
Descriptor: CHITINASE A1
Authors:Ikegami, T, Okada, T, Hashimoto, M, Seino, S, Watanabe, T, Shirakawa, M.
Deposit date:2000-01-27
Release date:2000-05-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1.
J.Biol.Chem., 275, 2000
1GEA
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BU of 1gea by Molmil
RECEPTOR-BOUND CONFORMATION OF PACAP21
Descriptor: PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE
Authors:Inooka, H, Ohtaki, T, Kitahara, O, Ikegami, T, Endo, S, Kitada, C, Ogi, K, Onda, H, Fujino, M, Shirakawa, M.
Deposit date:2000-10-20
Release date:2001-04-20
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Conformation of a peptide ligand bound to its G-protein coupled receptor.
Nat.Struct.Biol., 8, 2001
5Y3T
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BU of 5y3t by Molmil
Crystal structure of hetero-trimeric core of LUBAC: HOIP double-UBA complexed with HOIL-1L UBL and SHARPIN UBL
Descriptor: E3 ubiquitin-protein ligase RNF31, GLYCEROL, RanBP-type and C3HC4-type zinc finger-containing protein 1, ...
Authors:Tokunaga, A, Fujita, H, Ariyoshi, M, Ohki, I, Tochio, H, Iwai, K, Shirakawa, M.
Deposit date:2017-07-31
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cooperative Domain Formation by Homologous Motifs in HOIL-1L and SHARPIN Plays A Crucial Role in LUBAC Stabilization.
Cell Rep, 23, 2018
5ZCZ
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BU of 5zcz by Molmil
Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Heavy metal binding protein
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
5Z4B
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BU of 5z4b by Molmil
GB1 structure determination in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Protein LG
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-01-10
Release date:2019-01-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
5ZD0
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BU of 5zd0 by Molmil
Solution structure of human ubiquitin with three alanine mutations in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: ubiquitin
Authors:Tanaka, T, Ikeya, T, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
3A4R
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BU of 3a4r by Molmil
The crystal structure of SUMO-like domain 2 in Nip45
Descriptor: 1,2-ETHANEDIOL, NFATC2-interacting protein, SULFATE ION
Authors:Sekiyama, N, Arita, K, Ikeda, Y, Ariyoshi, M, Tochio, H, Saitoh, H, Shirakawa, M.
Deposit date:2009-07-14
Release date:2010-02-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural basis for regulation of poly-SUMO chain by a SUMO-like domain of Nip45
Proteins, 78, 2009
3A1A
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BU of 3a1a by Molmil
Crystal Structure of the DNMT3A ADD domain
Descriptor: 1,2-ETHANEDIOL, DNA (cytosine-5)-methyltransferase 3A, ZINC ION
Authors:Otani, J, Arita, K, Ariyoshi, M, Shirakawa, M.
Deposit date:2009-03-28
Release date:2009-11-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain
Embo Rep., 10, 2009
3B0F
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BU of 3b0f by Molmil
Crystal structure of the UBA domain of p62 and its interaction with ubiquitin
Descriptor: SULFATE ION, Sequestosome-1
Authors:Isogai, S, Morimoto, D, Arita, K, Unzai, S, Tenno, T, Hasegawa, J, Sou, Y, Komatsu, M, Tanaka, K, Shirakawa, M, Tochio, H.
Deposit date:2011-06-09
Release date:2011-06-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the ubiquitin-associated (UBA) domain of p62 and its interaction with ubiquitin.
J.Biol.Chem., 286, 2011
7CJV
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BU of 7cjv by Molmil
Solution structure of monomeric superoxide dismutase 1 with an additional mutation H46W in a dilute environment
Descriptor: Monomeric Human Cu,Zn Superoxide dismutase
Authors:Iwakawa, N, Morimoto, D, Walinda, E, Danielsson, J, Shirakawa, M, Sugase, K.
Deposit date:2020-07-14
Release date:2021-05-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Transient Diffusive Interactions with a Protein Crowder Affect Aggregation Processes of Superoxide Dismutase 1 beta-Barrel.
J.Phys.Chem.B, 125, 2021
7CJW
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BU of 7cjw by Molmil
Solution structure of monomeric superoxide dismutase 1 with an additional mutation H46W in a crowded environment
Descriptor: Monomeric Human Cu,Zn Superoxide dismutase
Authors:Iwakawa, N, Morimoto, D, Walinda, E, Danielsson, J, Shirakawa, M, Sugase, K.
Deposit date:2020-07-14
Release date:2021-05-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Transient Diffusive Interactions with a Protein Crowder Affect Aggregation Processes of Superoxide Dismutase 1 beta-Barrel.
J.Phys.Chem.B, 125, 2021
7D8K
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BU of 7d8k by Molmil
Solution structure of the methyl-CpG binding domain of MBD6 from Arabidopsis thaliana
Descriptor: Methyl-CpG-binding domain-containing protein 6
Authors:Mahana, Y, Ohki, I, Walinda, E, Morimoto, D, Sugase, K, Shirakawa, M.
Deposit date:2020-10-08
Release date:2021-10-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Insights into Methylated DNA Recognition by the Methyl-CpG Binding Domain of MBD6 from Arabidopsis thaliana .
Acs Omega, 7, 2022
2EI9
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BU of 2ei9 by Molmil
Crystal structure of R1Bm endonuclease domain
Descriptor: ACETIC ACID, Non-LTR retrotransposon R1Bmks ORF2 protein
Authors:Maita, N, Aoyagi, H, Osanai, M, Shirakawa, M, Fujiwara, H.
Deposit date:2007-03-12
Release date:2007-07-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies.
Nucleic Acids Res., 35, 2007
1IG4
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BU of 1ig4 by Molmil
Solution Structure of the Methyl-CpG-Binding Domain of Human MBD1 in Complex with Methylated DNA
Descriptor: 5'-D(*GP*TP*AP*TP*CP*(5CM)P*GP*GP*AP*TP*AP*C)-3', Methyl-CpG Binding Protein
Authors:Ohki, I, Shimotake, N, Fujita, N, Jee, J.-G, Ikegami, T, Nakao, M, Shirakawa, M.
Deposit date:2001-04-17
Release date:2001-05-30
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA.
Cell(Cambridge,Mass.), 105, 2001
1COO
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BU of 1coo by Molmil
THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT
Descriptor: RNA POLYMERASE ALPHA SUBUNIT
Authors:Jeon, Y.H, Negishi, T, Shirakawa, M, Yamazaki, T, Fujita, N, Ishihama, A, Kyogoku, Y.
Deposit date:1995-10-09
Release date:1996-03-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the activator contact domain of the RNA polymerase alpha subunit.
Science, 270, 1995
1COP
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BU of 1cop by Molmil
THREE-DIMENSIONAL DIMER STRUCTURE OF THE LAMBDA-CRO REPRESSOR IN SOLUTION AS DETERMINED BY HETERONUCLEAR MULTIDIMENSIONAL NMR
Descriptor: CRO REPRESSOR
Authors:Matsuo, H, Shirakawa, M, Kyogoku, Y.
Deposit date:1995-06-23
Release date:1995-10-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional dimer structure of the lambda-Cro repressor in solution as determined by heteronuclear multidimensional NMR.
J.Mol.Biol., 254, 1995
1FR0
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BU of 1fr0 by Molmil
SOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ANAEROBIC SENSOR KINASE ARCB FROM ESCHERICHIA COLI.
Descriptor: ARCB
Authors:Ikegami, T, Okada, T, Ohki, I, Hirayama, J, Mizuno, T, Shirakawa, M.
Deposit date:2000-09-07
Release date:2001-03-14
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and dynamic character of the histidine-containing phosphotransfer domain of anaerobic sensor kinase ArcB from Escherichia coli.
Biochemistry, 40, 2001
1IRY
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BU of 1iry by Molmil
Solution structure of the hMTH1, a nucleotide pool sanitization enzyme
Descriptor: hMTH1
Authors:Mishima, M, Itoh, N, Sakai, Y, Kamiya, H, Nakabeppu, Y, Shirakawa, M.
Deposit date:2001-10-25
Release date:2003-12-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates
J.Biol.Chem., 279, 2004
1UGL
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BU of 1ugl by Molmil
Solution structure of S8-SP11
Descriptor: S-locus pollen protein
Authors:Mishima, M, Takayama, S, Sasaki, K, Jee, J.G, Kojima, C, Isogai, A, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2003-09-30
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the Male Determinant Factor for Brassica Self-incompatibility
J.Biol.Chem., 278, 2003

 

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