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1AV5
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BU of 1av5 by Molmil
PKCI-SUBSTRATE ANALOG
Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, PROTEIN KINASE C INTERACTING PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
1ECL
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BU of 1ecl by Molmil
AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1).
Descriptor: ESCHERICHIA COLI TOPOISOMERASE I
Authors:Lima, C.D, Wang, J.C, Mondragon, A.
Deposit date:1995-05-05
Release date:1995-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I.
Nature, 367, 1994
6FIT
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BU of 6fit by Molmil
FHIT-TRANSITION STATE ANALOG
Descriptor: ADENOSINE MONOTUNGSTATE, FRAGILE HISTIDINE TRIAD PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
5FIT
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BU of 5fit by Molmil
FHIT-SUBSTRATE ANALOG
Descriptor: FRAGILE HISTIDINE TRIAD PROTEIN, PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
1KPF
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BU of 1kpf by Molmil
PKCI-SUBSTRATE ANALOG
Descriptor: ADENOSINE MONOPHOSPHATE, PROTEIN KINASE C INTERACTING PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
1KPE
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BU of 1kpe by Molmil
PKCI-TRANSITION STATE ANALOG
Descriptor: ADENOSINE-5'-DITUNGSTATE, PROTEIN KINASE C INTERACTING PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
3EAY
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BU of 3eay by Molmil
Crystal structure of the human SENP7 catalytic domain
Descriptor: SULFATE ION, Sentrin-specific protease 7
Authors:Lima, C.D, Reverter, D.
Deposit date:2008-08-26
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Human SENP7 Catalytic Domain and Poly-SUMO Deconjugation Activities for SENP6 and SENP7.
J.Biol.Chem., 283, 2008
3FIT
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BU of 3fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN) IN COMPLEX WITH ADENOSINE/SULFATE AMP ANALOG
Descriptor: ADENOSINE-5'-MONOPHOSPHATE, FRAGILE HISTIDINE PROTEIN, SULFATE ION, ...
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
1D8H
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BU of 1d8h by Molmil
X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.
Descriptor: MANGANESE (II) ION, SULFATE ION, mRNA TRIPHOSPHATASE CET1
Authors:Lima, C.D, Wang, L.K, Shuman, S.
Deposit date:1999-10-24
Release date:1999-11-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus.
Cell(Cambridge,Mass.), 99, 1999
1D8I
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BU of 1d8i by Molmil
X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH A SULFATE ION.
Descriptor: MRNA TRIPHOSPHATASE CET1, SULFATE ION
Authors:Lima, C.D, Wang, L.K, Shuman, S.
Deposit date:1999-10-24
Release date:1999-11-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus.
Cell(Cambridge,Mass.), 99, 1999
1FIT
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BU of 1fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN)
Descriptor: FRAGILE HISTIDINE PROTEIN, SULFATE ION, beta-D-fructofuranose
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
4FIT
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BU of 4fit by Molmil
FHIT-APO
Descriptor: FRAGILE HISTIDINE TRIAD PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
1JF9
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BU of 1jf9 by Molmil
Crystal Structure of selenocysteine lyase
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE LYASE
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-06-20
Release date:2001-07-04
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the E. coli NifS CsdB Protein at 2.0A Reveals the Structural Basis for Perselenide and Persulfide Intermediate Formation
J.Mol.Biol., 315, 2002
1KMK
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BU of 1kmk by Molmil
E. coli NifS/CsdB protein at 2.20A with the cysteine perselenide intermediate (residue CSZ).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE, SELENOCYSTEINE LYASE
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
1KMJ
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BU of 1kmj by Molmil
E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
1KPA
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BU of 1kpa by Molmil
PKCI-1-ZINC
Descriptor: HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
Authors:Lima, C.D, Klein, M.G, Weinstein, I.B, Hendrickson, W.A.
Deposit date:1996-01-06
Release date:1996-07-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
Proc.Natl.Acad.Sci.USA, 93, 1996
1KPB
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BU of 1kpb by Molmil
PKCI-1-APO
Descriptor: HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
Authors:Lima, C.D, Klein, M.G, Weinstein, I.B, Hendrickson, W.A.
Deposit date:1996-01-06
Release date:1996-07-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
Proc.Natl.Acad.Sci.USA, 93, 1996
1KPC
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BU of 1kpc by Molmil
PKCI-1-APO+ZINC
Descriptor: HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
Authors:Lima, C.D, Klein, M.G, Weinstein, I.B, Hendrickson, W.A.
Deposit date:1996-01-06
Release date:1996-07-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
Proc.Natl.Acad.Sci.USA, 93, 1996
1RI6
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BU of 1ri6 by Molmil
Structure of a putative isomerase from E. coli
Descriptor: putative isomerase ybhE
Authors:Lima, C.D, Kniewel, R, Solorzano, V, Wu, J, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2003-11-16
Release date:2003-11-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a putative 7-bladed propeller isomerase
To be Published
2FIT
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BU of 2fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN)
Descriptor: FRAGILE HISTIDINE PROTEIN, SULFATE ION, beta-D-fructofuranose
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
6DG4
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BU of 6dg4 by Molmil
Structure of the Chaetomium thermophilum Ulp1-like SUMO protease catalytic domain
Descriptor: GLYCEROL, SULFATE ION, Ulp1-like SUMO protease
Authors:Lima, C.D, Baytshtok, V.
Deposit date:2018-05-16
Release date:2018-07-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.442 Å)
Cite:Discovery and engineering of enhanced SUMO protease enzymes.
J. Biol. Chem., 293, 2018
3KYD
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BU of 3kyd by Molmil
Human SUMO E1~SUMO1-AMP tetrahedral intermediate mimic
Descriptor: 1,2-ETHANEDIOL, 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine, SUMO-activating enzyme subunit 1, ...
Authors:Lima, C.D.
Deposit date:2009-12-05
Release date:2010-02-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Active site remodelling accompanies thioester bond formation in the SUMO E1.
Nature, 463, 2010
5JNE
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BU of 5jne by Molmil
E2-SUMO-Siz1 E3-SUMO-PCNA complex
Descriptor: E3 SUMO-protein ligase SIZ1,Ubiquitin-like protein SMT3, GLYCEROL, Proliferating cell nuclear antigen, ...
Authors:Lima, C.D, Streich Jr, F.C.
Deposit date:2016-04-29
Release date:2016-08-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Capturing a substrate in an activated RING E3/E2-SUMO complex.
Nature, 536, 2016
5K36
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BU of 5k36 by Molmil
Structure of an eleven component nuclear RNA exosome complex bound to RNA
Descriptor: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ...
Authors:Lima, C.D, Zinder, J.C.
Deposit date:2016-05-19
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Nuclear RNA Exosome at 3.1 angstrom Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3.
Mol.Cell, 64, 2016
2NN6
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BU of 2nn6 by Molmil
Structure of the human RNA exosome composed of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, and Rrp40
Descriptor: 3'-5' exoribonuclease CSL4 homolog, Exosome complex exonuclease RRP4, Exosome complex exonuclease RRP40, ...
Authors:Lima, C.D.
Deposit date:2006-10-23
Release date:2006-12-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Cell(Cambridge,Mass.), 127, 2006

217705

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