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1QM8
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BU of 1qm8 by Molmil
Structure of Bacteriorhodopsin at 100 K
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
Authors:Takeda, K, Matsui, Y, Sato, H, Hino, T, Kanamori, E, Okumura, H, Yamane, T, Kamiya, N, Kouyama, T.
Deposit date:1999-09-22
Release date:2000-08-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Novel Three-Dimensional Crystal of Bacteriorhodopsin Obtained by Successive Fusion of the Vesicular Assemblies.
J.Mol.Biol., 283, 1998
1DZE
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BU of 1dze by Molmil
Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
Authors:Takeda, K, Matsui, Y, Sato, H, Hino, T, Kanamori, E, Okumura, H, Yamane, T, Iizuka, T, Kamiya, N, Adachi, S, Kouyama, T.
Deposit date:2000-02-25
Release date:2000-08-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix
J.Mol.Biol., 341, 2004
1IWM
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BU of 1iwm by Molmil
Crystal Structure of the Outer Membrane Lipoprotein Receptor, LolB
Descriptor: Outer Membrane Lipoprotein LolB, SULFATE ION
Authors:Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
Deposit date:2002-05-17
Release date:2003-07-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
1IWL
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BU of 1iwl by Molmil
Crystal Structure of the Lipoprotein Localization Factor, LolA
Descriptor: MAGNESIUM ION, Outer-membrane lipoproteins carrier protein, ZINC ION
Authors:Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
Deposit date:2002-05-17
Release date:2003-07-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB
Embo J., 22, 2003
1IWN
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BU of 1iwn by Molmil
Crystal Structure of the Outer Membrane Lipoprotein Receptor LolB Complexed with PEGMME2000
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, Outer Membrane Lipoprotein LolB, SULFATE ION
Authors:Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
Deposit date:2002-05-17
Release date:2003-07-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
6JWF
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BU of 6jwf by Molmil
Holo form of Pyranose Dehydrogenase PQQ domain from Coprinopsis cinerea
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Takeda, K, Ishida, T, Yoshida, M, Samejima, M, Ohno, H, Igarashi, K, Nakamura, N.
Deposit date:2019-04-20
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of the Catalytic and CytochromebDomains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase.
Appl.Environ.Microbiol., 85, 2019
1UA8
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BU of 1ua8 by Molmil
Crystal structure of the lipoprotein localization factor, LolA
Descriptor: Outer-membrane lipoproteins carrier protein
Authors:Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
Deposit date:2003-03-04
Release date:2003-07-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
1VAT
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BU of 1vat by Molmil
Iodine derivative of hen egg-white lysozyme
Descriptor: IODIDE ION, Lysozyme C
Authors:Takeda, K, Miyatake, H, Park, S.Y, Kawamoto, M, Kamiya, N, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-19
Release date:2005-03-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8
J.Appl.Crystallogr., 37, 2004
1VAU
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BU of 1vau by Molmil
Xenon derivative of hen egg-white lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Takeda, K, Miyatake, H, Park, S.Y, Kawamoto, M, Kamiya, N, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-19
Release date:2005-03-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8
J.Appl.Crystallogr., 37, 2004
6JT5
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BU of 6jt5 by Molmil
Crystal structure of PQQ doamin of Pyranose Dehydrogenase from Coprinopsis cinerea: apo-from
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular PQQ-dependent sugar dehydrogenase, ...
Authors:Takeda, K, Ishida, T, Yoshida, M, Samejima, M, Ohno, H, Igarashi, K, Nakamura, N.
Deposit date:2019-04-09
Release date:2019-11-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of the Catalytic and CytochromebDomains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase.
Appl.Environ.Microbiol., 85, 2019
6JT6
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BU of 6jt6 by Molmil
Crystal structure of cytochrome b domain of Pyranose Dehydrogenase from Coprinopsis cinerea
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Takeda, K, Ishida, T, Yoshida, M, Samejima, M, Ohno, H, Igarashi, K, Nakamura, N.
Deposit date:2019-04-09
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Catalytic and CytochromebDomains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase.
Appl.Environ.Microbiol., 85, 2019
1IW9
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BU of 1iw9 by Molmil
Crystal Structure of the M Intermediate of Bacteriorhodopsin
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, RETINAL, ...
Authors:Takeda, K, Matsui, Y, Kamiya, N, Adachi, S, Okumura, H, Kouyama, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-04-25
Release date:2003-12-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the M intermediate of bacteriorhodopsin: allosteric structural changes mediated by sliding movement of a transmembrane helix
J.Mol.Biol., 341, 2004
3A38
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BU of 3a38 by Molmil
Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution
Descriptor: GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ...
Authors:Takeda, K, Kusumoto, K, Hirano, Y, Miki, K.
Deposit date:2009-06-10
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.7 Å)
Cite:Detailed assessment of X-ray induced structural perturbation in a crystalline state protein.
J.Struct.Biol., 169, 2010
3A39
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BU of 3a39 by Molmil
Crystal Structure of High-Potential Iron-Sulfur Protein from Thermochromatium tepidum at 0.72 angstrom resolution
Descriptor: GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ...
Authors:Takeda, K, Kusumoto, K, Hirano, Y, Miki, K.
Deposit date:2009-06-11
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.72 Å)
Cite:Detailed assessment of X-ray induced structural perturbation in a crystalline state protein.
J.Struct.Biol., 169, 2010
3AAC
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BU of 3aac by Molmil
Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form II crystal
Descriptor: Putative uncharacterized protein ST1653
Authors:Takeda, K, Hayashi, T, Abe, T, Hirano, Y, Hanazono, Y, Yohda, M, Miki, K.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
3A9R
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BU of 3a9r by Molmil
X-ray Structures of Bacillus pallidus D-Arabinose IsomeraseComplex with (4R)-2-METHYLPENTANE-2,4-DIOL
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, D-arabinose isomerase, MANGANESE (II) ION
Authors:Takeda, K, Yoshida, H, Izumori, K, Kamitori, S.
Deposit date:2009-11-05
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3A9S
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BU of 3a9s by Molmil
X-ray Structure of Bacillus pallidus D-Arabinose Isomerase Complex with Glycerol
Descriptor: D-arabinose isomerase, GLYCEROL, MANGANESE (II) ION
Authors:Takeda, K, Yoshida, H, Izumori, K, Kamitori, S.
Deposit date:2009-11-05
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3AAB
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BU of 3aab by Molmil
Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form I crystal
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Putative uncharacterized protein ST1653
Authors:Takeda, K, Hayashi, T, Abe, T, Hirano, Y, Hanazono, Y, Yohda, M, Miki, K.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
3A9T
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BU of 3a9t by Molmil
X-ray Structure of Bacillus pallidus D-Arabinose Isomerase Complex with L-Fucitol
Descriptor: D-arabinose isomerase, FUCITOL, MANGANESE (II) ION
Authors:Takeda, K, Yoshida, H, Izumori, K, Kamitori, S.
Deposit date:2009-11-05
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
2ZPC
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BU of 2zpc by Molmil
Crystal structure of the R43L mutant of LolA in the closed form
Descriptor: Outer-membrane lipoprotein carrier protein
Authors:Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K.
Deposit date:2008-07-10
Release date:2008-08-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
2ZPD
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BU of 2zpd by Molmil
Crystal structure of the R43L mutant of LolA in the open form
Descriptor: Outer-membrane lipoprotein carrier protein
Authors:Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K.
Deposit date:2008-07-10
Release date:2008-08-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
3W5H
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BU of 3w5h by Molmil
Ultra-high resolution structure of NADH-cytochrome b5 reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, NADH-cytochrome b5 reductase 3
Authors:Takeda, K, Ohno, H, Kosugi, M, Takaba, K, Miki, K.
Deposit date:2013-01-30
Release date:2013-07-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (0.78 Å)
Cite:Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer
J.Mol.Biol., 425, 2013
3WJU
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BU of 3wju by Molmil
Crystal structure of the L68D variant of mLolB from Escherichia coli
Descriptor: Outer-membrane lipoprotein LolB, SULFATE ION
Authors:Takeda, K, Tokuda, H, Miki, K.
Deposit date:2013-10-16
Release date:2014-03-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
3WJT
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BU of 3wjt by Molmil
Crystal structure of the L68D variant of mLolB
Descriptor: CHLORIDE ION, Outer-membrane lipoprotein LolB, SULFATE ION
Authors:Takeda, K, Tokuda, H, Miki, K.
Deposit date:2013-10-16
Release date:2014-03-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
3WJV
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BU of 3wjv by Molmil
Crystal structure of the L68E variant of mLolB
Descriptor: Outer-membrane lipoprotein LolB, SULFATE ION
Authors:Takeda, K, Tokuda, H, Miki, K.
Deposit date:2013-10-16
Release date:2014-03-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014

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