Author results

5ZG1
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CRYSTAL STRUCTURE OF THE GLUA2O LBD IN COMPLEX WITH GLUTAMATE AND COMPOUND-2
Descriptor:Glutamate receptor 2, GLUTAMIC ACID, 9-(4-~{tert}-butylphenyl)-3,4-dihydropyrido[2,1-c][1,2,4]thiadiazine 2,2-dioxide, ...
Authors:Sogabe, S., Igaki, S., Hirokawa, A., Zama, Y., Lane, W., Snell, G.
Deposit date:2018-03-07
Release date:2019-01-16
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:TAK-137, an AMPA-R potentiator with little agonistic effect, has a wide therapeutic window.
Neuropsychopharmacology, 44, 2019
2ZIB
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CRYSTAL STRUCTURE ANALYSIS OF CALCIUM-INDEPENDENT TYPE II ANTIFREEZE PROTEIN
Descriptor:Type II antifreeze protein, SULFATE ION
Authors:Nishimiya, Y., Sato, R., Kondo, H., Noro, N., Sugimoto, H., Suzuki, M., Tsuda, S.
Deposit date:2008-02-14
Release date:2008-08-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus
J.Mol.Biol., 382, 2008
4YSP
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STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 8.32 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diedrichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSR
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STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 16.6 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YST
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STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 24.9 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
3VQG
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CRYSTAL STRUCTURE ANALYSIS OF THE PDZ DOMAIN DERIVED FROM THE TIGHT JUNCTION REGULATING PROTEIN
Descriptor:E3 ubiquitin-protein ligase LNX, C-terminal peptide from Immunoglobulin superfamily member 5, SULFATE ION
Authors:Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
Deposit date:2012-03-23
Release date:2013-03-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
4YSD
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ROOM TEMPERATURE STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS
Descriptor:Nitrite reductase, COPPER (II) ION, ACETIC ACID
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
5HWA
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CRYSTAL STRUCTURE OF MH-K1 CHITOSANASE IN SUBSTRATE-BOUND FORM
Descriptor:Chitosanase, D-GLUCOSAMINE, CACODYLATE ION, ...
Authors:Suzuki, M., Saito, A., Ando, A., Miki, K., Saito, J.
Deposit date:2016-01-29
Release date:2017-02-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Understanding for the catalytic mechanism based on the substrate-bound structure of GH-46 chitosanase from Bacillus circulans MH-K1
to be published
3VUR
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CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE IN COMPLEX WITH GLUTATHIONESULFONIC ACID
Descriptor:Glutathione S-transferase sigma, PENTAETHYLENE GLYCOL, GLUTATHIONE SULFONIC ACID
Authors:Yamamoto, K., Higashiura, A., Nakagawa, A., Suzuki, M.
Deposit date:2012-07-05
Release date:2013-07-10
Method:X-RAY DIFFRACTION (1.365 Å)
Cite:Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathionesulfonic acid
TO BE PUBLISHED
2DCY
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS FAMILY-11 XYLANASE
Descriptor:Endo-1,4-beta-xylanase A, 1,4-DIETHYLENE DIOXIDE, L(+)-TARTARIC ACID, ...
Authors:Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
3W80
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CRYSTAL STRUCTURE OF DODECAMER HUMAN INSULIN WITH DOUBLE C-AXIS LENGTH OF THE HEXAMER 2 ZN INSULIN CELL
Descriptor:Insulin, ZINC ION
Authors:Murayoshi, M., Sasaki, K., Sakabe, N., Sakabe, K.
Deposit date:2013-03-11
Release date:2013-07-03
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of dodecamer insulin with double C-axis length of the hexamer 2 Zn insulin celll
To be Published
5TTC
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XFEL STRUCTURE OF INFLUENZA A M2 WILD TYPE TM DOMAIN AT HIGH PH IN THE LIPIDIC CUBIC PHASE AT ROOM TEMPERATURE
Descriptor:Matrix protein 2, CHLORIDE ION, CALCIUM ION
Authors:Thomaston, J.L., Woldeyes, R.A., Fraser, J.S., DeGrado, W.F.
Deposit date:2016-11-02
Release date:2017-08-23
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XFC
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SERIAL FEMTOSECOND X-RAY STRUCTURE OF A STEM DOMAIN OF HUMAN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE SOLVED BY SE-SAD USING XFEL (REFINED AGAINST 13,000 PATTERNS)
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, 4-Nitrophenyl-beta-D-mannopyranoside
Authors:Kuwabara, N., Fumiaki, Y., Kato, R., Manya, H.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
5JOO
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XFEL STRUCTURE OF INFLUENZA A M2 WILD TYPE TM DOMAIN AT LOW PH IN THE LIPIDIC CUBIC PHASE AT ROOM TEMPERATURE
Descriptor:Matrix protein 2, CALCIUM ION, CHLORIDE ION
Authors:Thomaston, J.L., Woldeyes, R.A., Fraser, J.S., DeGrado, W.F.
Deposit date:2016-05-02
Release date:2017-08-02
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (1.413 Å)
Cite:XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4YSA
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COMPLETELY OXIDIZED STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS
Descriptor:Nitrite reductase, COPPER (II) ION, SODIUM ION
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
5WRA
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5UM1
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XFEL STRUCTURE OF INFLUENZA A M2 WILD TYPE TM DOMAIN AT INTERMEDIATE PH IN THE LIPIDIC CUBIC PHASE AT ROOM TEMPERATURE
Descriptor:Matrix protein 2, CALCIUM ION, CHLORIDE ION
Authors:Thomaston, J.L., Woldeyes, R.A., Fraser, J.S., DeGrado, W.F.
Deposit date:2017-01-25
Release date:2017-08-23
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1O3Y
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CRYSTAL STRUCTURE OF MOUSE ARF1 (DELTA17-Q71L), GTP FORM
Descriptor:ADP-ribosylation factor 1, MAGNESIUM ION, GUANOSINE-5'-TRIPHOSPHATE
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-05-08
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
Nat.Struct.Biol., 10, 2003
1V5D
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THE CRYSTAL STRUCTURE OF THE ACTIVE FORM CHITOSANASE FROM BACILLUS SP. K17 AT PH6.4
Descriptor:chitosanase, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)
Authors:Adachi, W., Shimizu, S., Sunami, T., Fukazawa, T., Suzuki, M., Yatsunami, R., Nakamura, S., Takenaka, A.
Deposit date:2003-11-22
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17
J.MOL.BIOL., 343, 2004
2DPF
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CRYSTAL STRUCTURE OF CURCULIN1 HOMODIMER
Descriptor:Curculin, SULFATE ION
Authors:Kurimoto, E., Suzuki, M., Amemiya, E., Yamaguchi, Y., Nirasawa, S., Shimba, N., Xu, N., Kashiwagi, T., Kawai, M., Suzuki, E., Kato, K.
Deposit date:2006-05-11
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Curculin Exhibits Sweet-tasting and Taste-modifying Activities through Its Distinct Molecular Surfaces.
J.Biol.Chem., 282, 2007
3W3E
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STRUCTURE OF VIGNA UNGUICULATA CHITINASE WITH REGULATION ACTIVITY OF THE PLANT CELL WALL
Descriptor:Cotyledoneous yieldin-like protein
Authors:Morohashi, K., Sasaki, K., Sakabe, N., Sakabe, K.
Deposit date:2012-12-20
Release date:2013-01-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Three-dimensional structure analysis of Vigna unguiculata chitinase with regulation activity of the yield threshold of cell wall
To be Published
4YSO
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COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 0.064 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSQ
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STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 8.38 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSS
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STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 16.7 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diedrichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSU
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STRUCTURE OF COPPER NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS - 25.0 MGY
Descriptor:Nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016