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7MSF
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BU of 7msf by Molmil
MS2 PROTEIN CAPSID/RNA COMPLEX
Descriptor: 5'-R(*UP*CP*GP*CP*CP*AP*AP*CP*AP*GP*GP*CP*GP*G)-3', MS2 PROTEIN CAPSID
Authors:Rowsell, S, Stonehouse, N.J, Convery, M.A, Adams, C.J, Ellington, A.D, Hirao, I, Peabody, D.S, Stockley, P.G, Phillips, S.E.V.
Deposit date:1998-05-20
Release date:1998-11-11
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of a series of RNA aptamers complexed to the same protein target.
Nat.Struct.Biol., 5, 1998
6MSF
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BU of 6msf by Molmil
F6 APTAMER MS2 COAT PROTEIN COMPLEX
Descriptor: PROTEIN (MS2 PROTEIN CAPSID), RNA (5'-R(*CP*AP*GP*UP*CP*AP*CP*UP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*CP*AP*GP*UP*CP*AP*CP*UP*GP*GP*G)-3')
Authors:Convery, M.A, Rowsell, S, Stonehouse, N.J, Ellington, A.D, Hirao, I, Murray, J.B, Peabody, D.S, Phillips, S.E.V, Stockley, P.G.
Deposit date:1998-01-06
Release date:1998-07-08
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of an RNA aptamer-protein complex at 2.8 A resolution.
Nat.Struct.Biol., 5, 1998
5MSF
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BU of 5msf by Molmil
MS2 PROTEIN CAPSID/RNA COMPLEX
Descriptor: 5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*GP*G)-3', MS2 PROTEIN CAPSID
Authors:Rowsell, S, Stonehouse, N.J, Convery, M.A, Adams, C.J, Ellington, A.D, Hirao, I, Peabody, D.S, Stockley, P.G, Phillips, S.E.V.
Deposit date:1998-05-15
Release date:1998-11-11
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of a series of RNA aptamers complexed to the same protein target.
Nat.Struct.Biol., 5, 1998
4V4M
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BU of 4v4m by Molmil
1.45 Angstrom Structure of STNV coat protein
Descriptor: CALCIUM ION, Coat protein
Authors:Lane, S.W, Dennis, C.A, Lane, C.L, Trinh, C.H, Rizkallah, P.J, Stockley, P.G, Phillips, S.E.V.
Deposit date:2011-04-28
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Construction and crystal structure of recombinant STNV capsids.
J.Mol.Biol., 413, 2011
3S4G
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BU of 3s4g by Molmil
Low Resolution Structure of STNV complexed with RNA
Descriptor: Capsid protein, RNA (5'-R(P*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*U)-3')
Authors:Lane, S.W, Dennis, C.A, Lane, C.L, Trinh, C.H, Rizkallah, P.J, Stockley, P.G, Phillips, S.E.V.
Deposit date:2011-05-19
Release date:2011-08-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (6 Å)
Cite:Construction and crystal structure of recombinant STNV capsids.
J.Mol.Biol., 413, 2011
5MJV
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BU of 5mjv by Molmil
Rebuild and re-refined model for Human Parechovirus 1
Descriptor: CAPSID SUBUNIT VP0, CAPSID SUBUNIT VP1, CAPSID SUBUNIT VP3, ...
Authors:Shakeel, S, Dykeman, E.C, White, S.J, Ora, A, Cockburn, J.J.B, Butcher, S.J, Stockley, P.G, Twarock, R.
Deposit date:2016-12-01
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Genomic RNA folding mediates assembly of human parechovirus.
Nat Commun, 8, 2017
1U1Y
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BU of 1u1y by Molmil
Crystal structure of a complex between WT bacteriophage MS2 coat protein and an F5 aptamer RNA stemloop with 2aminopurine substituted at the-10 position
Descriptor: 5'-R(*CP*CP*GP*GP*(2PR)P*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*G)-3', Coat protein
Authors:Horn, W.T, Convery, M.A, Stonehouse, N.J, Adams, C.J, Liljas, L, Phillips, S.E, Stockley, P.G.
Deposit date:2004-07-16
Release date:2004-12-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The crystal structure of a high affinity RNA stem-loop complexed with the bacteriophage MS2 capsid: further challenges in the modeling of ligand-RNA interactions.
Rna, 10, 2004
6THD
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BU of 6thd by Molmil
Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E
Descriptor: Genome polyprotein, MYRISTIC ACID, SULFATE ION
Authors:Chandler-Bostock, R, Mata, C.P, Bingham, R, Dykeman, E.J, Meng, B, Tuthill, T.J, Rowlands, D.J, Ranson, N.A, Twarock, R, Stockley, P.G.
Deposit date:2019-11-19
Release date:2020-12-09
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (2.23 Å)
Cite:Assembly of infectious enteroviruses depends on multiple, conserved genomic RNA-coat protein contacts.
Plos Pathog., 16, 2020
6THN
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BU of 6thn by Molmil
Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E symmetry expansion+2fold focused classification
Descriptor: Genome polyprotein, MYRISTIC ACID, RNA Peak 9 Bernoulli Plot, ...
Authors:Chandler-Bostock, R, Mata, C.P, Bingham, R, Dykeman, E.J, Meng, B, Tuthill, T.J, Rowlands, D.J, Ranson, N.A, Twarock, R, Stockley, P.G.
Deposit date:2019-11-20
Release date:2020-12-09
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Assembly of infectious enteroviruses depends on multiple, conserved genomic RNA-coat protein contacts.
Plos Pathog., 16, 2020
7ABL
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BU of 7abl by Molmil
HBV pgRNA T=4 NCP icosahedral symmetry
Descriptor: Capsid protein
Authors:Patel, N, Clark, S, Weis, E.U, Mata, C.P, Bohon, J, Farquhar, E, Ranson, N.A, Twarock, R, Stockley, P.G.
Deposit date:2020-09-07
Release date:2021-10-27
Last modified:2022-05-11
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:In vitro functional analysis of gRNA sites regulating assembly of hepatitis B virus.
Commun Biol, 4, 2021
2P5L
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BU of 2p5l by Molmil
Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator site
Descriptor: Arginine repressor, DNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3'), ...
Authors:Garnett, J.A, Marincs, F, Baumberg, S, Stockley, P.G, Phillips, S.E.V.
Deposit date:2007-03-15
Release date:2008-03-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and function of the arginine repressor-operator complex from Bacillus subtilis.
J.Mol.Biol., 379, 2008
2P5M
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BU of 2p5m by Molmil
C-terminal domain hexamer of AhrC bound with L-arginine
Descriptor: ARGININE, Arginine repressor
Authors:Garnett, J.A, Baumberg, S, Stockley, P.G, Phillips, S.E.V.
Deposit date:2007-03-15
Release date:2007-10-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the C-terminal effector-binding domain of AhrC bound to its corepressor L-arginine.
Acta Crystallogr.,Sect.F, 63, 2007
2P5K
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BU of 2p5k by Molmil
Crystal structure of the N-terminal domain of AhrC
Descriptor: Arginine repressor
Authors:Garnett, J.A, Baumberg, S, Stockley, P.G, Phillips, S.E.V.
Deposit date:2007-03-15
Release date:2007-10-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1 Å)
Cite:A high-resolution structure of the DNA-binding domain of AhrC, the arginine repressor/activator protein from Bacillus subtilis.
Acta Crystallogr.,Sect.F, 63, 2007
2IZN
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BU of 2izn by Molmil
MS2-RNA HAIRPIN (G-10) COMPLEX
Descriptor: 5'-R(*AP*CP*AP*UP*CP*GP*CP*GP*AP*UP *UP*AP*CP*GP*GP*AP*UP*GP*U)-3', MS2 COAT PROTEIN
Authors:Helgstrand, C, Grahn, E, Moss, T, Stonehouse, N.J, Tars, K, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2006-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Complexes
Nucleic Acids Res., 30, 2002
2IZ9
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BU of 2iz9 by Molmil
MS2-RNA HAIRPIN (4ONE -5) COMPLEX
Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3', MS2 COAT PROTEIN
Authors:Grahn, E, Stonehouse, N.J, Adams, C.J, Fridborg, K, Beigelman, L, Matulic-Adamic, J, Warriner, S.L, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2006-07-27
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Deletion of a Single Hydrogen Bonding Atom from the MS2 RNA Operator Leads to Dramatic Rearrangements at the RNA-Coat Protein Interface
Nucleic Acids Res., 28, 2000
2IZ8
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BU of 2iz8 by Molmil
MS2-RNA HAIRPIN (C-7) COMPLEX
Descriptor: MS2 COAT PROTEIN, RNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')
Authors:Helgstrand, C, Grahn, E, Stonehouse, N.J, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2006-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Hairpins
Nucleic Acids Res., 30, 2002
2IZM
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BU of 2izm by Molmil
MS2-RNA HAIRPIN (C-10) COMPLEX
Descriptor: 5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3', Capsid protein
Authors:Helgstrand, C, Grahn, E, Moss, T, Stonehouse, N.J, Tars, K, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2007-07-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Complexes
Nucleic Acids Res., 30, 2002
3ZX8
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BU of 3zx8 by Molmil
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Descriptor: CAPSID PROTEIN
Authors:Bakker, S.E, Robottom, J, Hogle, J.M, Maeda, A, Pearson, A.R, Stockley, P.G, Ranson, N.A, Harrison, S.C.
Deposit date:2011-08-08
Release date:2012-07-18
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Isolation of an Asymmetric RNA Uncoating Intermediate for a Single-Stranded RNA Plant Virus.
J.Mol.Biol., 417, 2012
3ZX9
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BU of 3zx9 by Molmil
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Descriptor: CAPSID PROTEIN
Authors:Bakker, S.E, Robottom, J, Pearson, A.R, Stockley, P.G, Ranson, N.A.
Deposit date:2011-08-08
Release date:2012-07-18
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Isolation of an Asymmetric RNA Uncoating Intermediate for a Single-Stranded RNA Plant Virus.
J.Mol.Biol., 417, 2012
4BCU
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BU of 4bcu by Molmil
Satellite Tobacco Necrosis Virus (STNV) virus like particle in complex with the B3 aptamer
Descriptor: CALCIUM ION, COAT PROTEIN
Authors:Ford, R.J, Barker, A.M, Bakker, S.E, Coutts, R.H, Ranson, N.A, Phillips, S.E.V, Pearson, A.R, Stockley, P.G.
Deposit date:2012-10-03
Release date:2013-01-23
Last modified:2013-03-20
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Sequence-Specific, RNA-Protein Interactions Overcome Electrostatic Barriers Preventing Assembly of Satellite Tobacco Necrosis Virus Coat Protein.
J.Mol.Biol., 425, 2013
4BP7
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BU of 4bp7 by Molmil
Asymmetric structure of a virus-receptor complex
Descriptor: COAT PROTEIN
Authors:Dent, K.C, Thompson, R, Barker, A.M, Barr, J.N, Hiscox, J.A, Stockley, P.G, Ranson, N.A.
Deposit date:2013-05-23
Release date:2013-07-17
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (39 Å)
Cite:The Asymmetric Structure of an Icosahedral Virus Bound its Receptor Suggests a Mechanism for Genome Release.
Structure, 21, 2013
4CTG
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BU of 4ctg by Molmil
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle
Descriptor: P1
Authors:Bakker, S.E, Groppelli, E, Pearson, A.R, Stockley, P.G, Rowlands, D.J, Ranson, N.A.
Deposit date:2014-03-13
Release date:2014-05-21
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis a Virus Particle.
J.Virol., 88, 2014
4CTF
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BU of 4ctf by Molmil
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle
Descriptor: EQUINE RHINITIS A VIRUS, P1, VP1
Authors:Bakker, S.E, Groppelli, E, Pearson, A.R, Stockley, P.G, Rowlands, D.J, Ranson, N.A.
Deposit date:2014-03-13
Release date:2014-05-21
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis a Virus Particle.
J.Virol., 88, 2014
1ZSE
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BU of 1zse by Molmil
RNA stemloop from bacteriophage Qbeta complexed with an N87S mutant MS2 Capsid
Descriptor: Coat protein, RNA HAIRPIN
Authors:Horn, W.T, Tars, K, Grahn, E, Helgstrand, C, Baron, A.J, Lago, H, Adams, C.J, Peabody, D.S, Phillips, S.E.V, Stonehouse, N.J, Liljas, L, Stockley, P.G.
Deposit date:2005-05-24
Release date:2006-05-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2
Structure, 14, 2006
2B2D
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BU of 2b2d by Molmil
RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid
Descriptor: 5'-R(*AP*UP*GP*CP*AP*UP*GP*UP*CP*UP*AP*AP*GP*AP*CP*AP*GP*CP*AP*U)-3', Coat protein
Authors:Horn, W.T, Tars, K, Grahn, E, Helgstrand, C, Baron, A.J, Lago, H, Adams, C.J, Peabody, D.S, Phillips, S.E.V, Stonehouse, N.J, Liljas, L, Stockley, P.G.
Deposit date:2005-09-19
Release date:2006-05-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2
Structure, 14, 2006

 

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