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1JSW
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NATIVE L-ASPARTATE AMMONIA LYASE
Descriptor: ACETATE ION, L-ASPARTATE AMMONIA-LYASE, beta-D-glucopyranose
Authors:Shi, W, Dunbar, J, Farber, G.K.
Deposit date:1997-02-19
Release date:1997-06-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of L-aspartate ammonia-lyase from Escherichia coli.
Biochemistry, 36, 1997
1BZY
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HUMAN HGPRTASE WITH TRANSITION STATE INHIBITOR
Descriptor: HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE, MAGNESIUM ION, PHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN-2-YLMETHYL] ESTER, ...
Authors:Shi, W, Li, C, Tyler, P.C, Furneaux, R.H, Grubmeyer, C, Schramm, V.L, Almo, S.C.
Deposit date:1998-11-05
Release date:1999-06-22
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2.0 A structure of human hypoxanthine-guanine phosphoribosyltransferase in complex with a transition-state analog inhibitor.
Nat.Struct.Biol., 6, 1999
1CJB
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MALARIAL PURINE PHOSPHORIBOSYLTRANSFERASE
Descriptor: (1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE, MAGNESIUM ION, PROTEIN (HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE), ...
Authors:Shi, W, Li, C.M, Tyler, P.C, Furneaux, R.H, Cahill, S.M, Girvin, M.E, Grubmeyer, C, Schramm, V.L, Almo, S.C.
Deposit date:1999-04-08
Release date:1999-08-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2.0 A structure of malarial purine phosphoribosyltransferase in complex with a transition-state analogue inhibitor.
Biochemistry, 38, 1999
1CI0
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PNP OXIDASE FROM SACCHAROMYCES CEREVISIAE
Descriptor: FLAVIN MONONUCLEOTIDE, PROTEIN (PNP OXIDASE)
Authors:Shi, W, Ostrov, D.A, Gerchman, S.E, Graziano, V, Kycia, H, Studier, B, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:1999-04-06
Release date:1999-08-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structure of PNP Oxidase from S. Cerevisiae
To be Published
1DQP
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CRYSTAL STRUCTURE OF GIARDIA GUANINE PHOSPHORIBOSYLTRANSFERASE COMPLEXED WITH IMMUCILLING
Descriptor: 1,4-DIDEOXY-1,4-IMINO-1-(S)-(9-DEAZAGUANIN-9-YL)-D-RIBITOL, GUANINE PHOSPHORIBOSYLTRANSFERASE, ISOPROPYL ALCOHOL
Authors:Shi, W, Munagala, N.R, Wang, C.C, Li, C.M, Tyler, P.C, Furneaux, R.H, Grubmeyer, C, Schramm, V.L, Almo, S.C.
Deposit date:2000-01-04
Release date:2000-07-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of Giardia lamblia guanine phosphoribosyltransferase at 1.75 A(,).
Biochemistry, 39, 2000
1DQN
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CRYSTAL STRUCTURE OF GIARDIA GUANINE PHOSPHORIBOSYLTRANSFERASE COMPLEXED WITH A TRANSITION STATE ANALOGUE
Descriptor: GUANINE PHOSPHORIBOSYLTRANSFERASE, ISOPROPYL ALCOHOL, MAGNESIUM ION, ...
Authors:Shi, W, Munagala, N.R, Wang, C.C, Li, C.M, Tyler, P.C, Furneaux, R.H, Grubmeyer, C, Schramm, V.L, Almo, S.C.
Deposit date:2000-01-04
Release date:2000-07-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of Giardia lamblia guanine phosphoribosyltransferase at 1.75 A(,).
Biochemistry, 39, 2000
1EZR
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CRYSTAL STRUCTURE OF NUCLEOSIDE HYDROLASE FROM LEISHMANIA MAJOR
Descriptor: CALCIUM ION, NUCLEOSIDE HYDROLASE
Authors:Shi, W, Schramm, V.L, Almo, S.C.
Deposit date:2000-05-11
Release date:2000-05-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nucleoside hydrolase from Leishmania major. Cloning, expression, catalytic properties, transition state inhibitors, and the 2.5-a crystal structure.
J.Biol.Chem., 274, 1999
1G2Q
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CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE
Descriptor: ADENINE PHOSPHORIBOSYLTRANSFERASE 1
Authors:Shi, W, Tanaka, K.S.E, Almo, S.C, Schramm, V.L.
Deposit date:2000-10-20
Release date:2001-12-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural analysis of adenine phosphoribosyltransferase from Saccharomyces cerevisiae.
Biochemistry, 40, 2001
1G2P
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CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE
Descriptor: ADENINE PHOSPHORIBOSYLTRANSFERASE 1, SULFATE ION
Authors:Shi, W, Tanaka, K.S.E, Almo, S.C, Schramm, V.L.
Deposit date:2000-10-20
Release date:2001-12-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural analysis of adenine phosphoribosyltransferase from Saccharomyces cerevisiae.
Biochemistry, 40, 2001
1G2O
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CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH A TRANSITION-STATE INHIBITOR
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, PHOSPHATE ION, PURINE NUCLEOSIDE PHOSPHORYLASE
Authors:Shi, W, Basso, L.A, Tyler, P.C, Furneaux, R.H, Blanchard, J.S, Almo, S.C, Schramm, V.L.
Deposit date:2000-10-20
Release date:2001-08-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structures of purine nucleoside phosphorylase from Mycobacterium tuberculosis in complexes with immucillin-H and its pieces.
Biochemistry, 40, 2001
1ZVM
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Crystal structure of human CD38: cyclic-ADP-ribosyl synthetase/NAD+ glycohydrolase
Descriptor: ADP-ribosyl cyclase 1, SULFATE ION
Authors:Shi, W, Yang, T, Almo, S.C, Schramm, V.L, Sauve, A.
Deposit date:2005-06-02
Release date:2006-06-06
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human CD38: Cyclic-ADP-ribosyl synthetase/NAD+ glycohydrolase
To be Published
7M8E
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E.coli RNAP-RapA elongation complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, W, Liu, B.
Deposit date:2021-03-29
Release date:2021-08-18
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for activation of Swi2/Snf2 ATPase RapA by RNA polymerase.
Nucleic Acids Res., 49, 2021
1I80
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CRYSTAL STRUCTURE OF M. TUBERCULOSIS PNP IN COMPLEX WITH IMINORIBITOL, 9-DEAZAHYPOXANTHINE AND PHOSPHATE ION
Descriptor: 9-DEAZAHYPOXANTHINE, IMINORIBITOL, PHOSPHATE ION, ...
Authors:Shi, W, Basso, L.A, Tyler, P.C, Furneaux, R.H, Blanchard, J.S, Almo, S.C, Schramm, V.L.
Deposit date:2001-03-12
Release date:2001-08-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of purine nucleoside phosphorylase from Mycobacterium tuberculosis in complexes with immucillin-H and its pieces.
Biochemistry, 40, 2001
1L1Q
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BU of 1l1q by Molmil
Crystal Structure of APRTase from Giardia lamblia Complexed with 9-deazaadenine
Descriptor: 9-DEAZAADENINE, Adenine phosphoribosyltransferase, SULFATE ION
Authors:Shi, W, Sarver, A.E, Wang, C.C, Tanaka, K.S, Almo, S.C, Schramm, V.L.
Deposit date:2002-02-19
Release date:2002-11-27
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Closed Site Complexes of Adenine Phosphoribosyltransferase from Giardia lamblia Reveal a Mechanism of Ribosyl Migration.
J.Biol.Chem., 277, 2002
1L1R
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Crystal Structure of APRTase from Giardia lamblia Complexed with 9-deazaadenine, Mg2+ and PRPP
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 9-DEAZAADENINE, Adenine phosphoribosyltransferase, ...
Authors:Shi, W, Sarver, A.E, Wang, C.C, Tanaka, K.S, Almo, S.C, Schramm, V.L.
Deposit date:2002-02-19
Release date:2002-11-27
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Closed Site Complexes of Adenine Phosphoribosyltransferase from Giardia lamblia Reveal a Mechanism of Ribosyl Migration.
J.Biol.Chem., 277, 2002
1NW4
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Crystal Structure of Plasmodium falciparum Purine Nucleoside Phosphorylase in complex with ImmH and Sulfate
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, ISOPROPYL ALCOHOL, SULFATE ION, ...
Authors:Shi, W, Ting, L.M, Kicska, G.A, Lewandowicz, A, Tyler, P.C, Evans, G.B, Furneaux, R.H, Kim, K, Almo, S.C, Schramm, V.L.
Deposit date:2003-02-05
Release date:2004-03-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Plasmodium falciparum Purine Nucleoside Phosphorylase: CRYSTAL STRUCTURES, IMMUCILLIN INHIBITORS, AND DUAL CATALYTIC FUNCTION.
J.Biol.Chem., 279, 2004
1Q1G
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Crystal structure of Plasmodium falciparum PNP with 5'-methylthio-immucillin-H
Descriptor: 3,4-DIHYDROXY-2-[(METHYLSULFANYL)METHYL]-5-(4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)PYRROLIDINIUM, ISOPROPYL ALCOHOL, SULFATE ION, ...
Authors:Shi, W, Ting, L.M, Kicska, G.A, Lewandowicz, A, Tyler, P.C, Evans, G.B, Furneaux, R.H, Kim, K, Almo, S.C, Schramm, V.L.
Deposit date:2003-07-19
Release date:2004-03-16
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Plasmodium falciparum Purine Nucleoside Phosphorylase: CRYSTAL STRUCTURES, IMMUCILLIN INHIBITORS, AND DUAL CATALYTIC FUNCTION.
J.Biol.Chem., 279, 2004
1RSZ
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Structure of human purine nucleoside phosphorylase in complex with DADMe-Immucillin-H and sulfate
Descriptor: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, Purine nucleoside phosphorylase, SULFATE ION
Authors:Shi, W, Lewandowicz, A, Tyler, P.C, Furneaux, R.H, Almo, S.C, Schramm, V.L.
Deposit date:2003-12-10
Release date:2005-02-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural comparison of human and malarial purine nucleoside phosphorylases
To be Published
1RR6
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Structure of human purine nucleoside phosphorylase in complex with Immucillin-H and phosphate
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, PHOSPHATE ION, Purine nucleoside phosphorylase
Authors:Shi, W, Lewandowicz, A, Tyler, P.C, Furneaux, R.H, Almo, S.C, Schramm, V.L.
Deposit date:2003-12-08
Release date:2005-02-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Plasmodium falciparum purine nucleoside phosphorylase: crystal structures, immucillin inhibitors, and dual catalytic function.
J.Biol.Chem., 279, 2004
1RT9
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Structure of human purine nucleoside phosphorylase in complex with Immucillin-H and sulfate
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, Purine nucleoside phosphorylase, SULFATE ION
Authors:Shi, W, Lewandowicz, A, Tyler, P.C, Furneaux, R.H, Almo, S.C, Schramm, V.L.
Deposit date:2003-12-10
Release date:2005-02-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural comparison of human and malarial purine nucleoside phosphorylases
To be Published
4P96
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FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae
Descriptor: Fatty acid metabolism regulator protein
Authors:Shi, W, Kull, F.J.
Deposit date:2014-04-02
Release date:2015-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand.
Nat Commun, 6, 2015
4PDK
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FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA
Descriptor: Fatty acid metabolism regulator protein, S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)
Authors:Shi, W, Kull, F.J.
Deposit date:2014-04-19
Release date:2015-02-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand.
Nat Commun, 6, 2015
3K9A
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Crystal Structure of HIV gp41 with MPER
Descriptor: HIV glycoprotein gp41
Authors:Shi, W, Han, D, Habte, H, Cho, M, Chance, M.R.
Deposit date:2009-10-15
Release date:2010-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural characterization of HIV gp41 with the membrane-proximal external region
J.Biol.Chem., 285, 2010
6KWR
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Crystal structure of enterovirus 71 polymerase elongation complex (ddCTP form)
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (31-MER), ...
Authors:Shi, W, Gong, P.
Deposit date:2019-09-08
Release date:2019-12-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A nucleobase-binding pocket in a viral RNA-dependent RNA polymerase contributes to elongation complex stability.
Nucleic Acids Res., 48, 2020
6KWQ
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Crystal structure of enterovirus 71 polymerase elongation complex (native form)
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, MAGNESIUM ION, ...
Authors:Shi, W, Gong, P.
Deposit date:2019-09-08
Release date:2019-12-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A nucleobase-binding pocket in a viral RNA-dependent RNA polymerase contributes to elongation complex stability.
Nucleic Acids Res., 48, 2020

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