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1A8N
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SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES
Descriptor:DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS
Authors:Kettani, A., Bouaziz, S., Gorin, A., Zhao, H., Jones, R., Patel, D.J.
Deposit date:1998-03-27
Release date:1998-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a Na cation stabilized DNA quadruplex containing G.G.G.G and G.C.G.C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA.
J.Mol.Biol., 282, 1998
1A8W
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A K+ CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP SPANNING SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C REPEATS, NMR, 8 STRUCTURES
Descriptor:DNA QUADRUPLEX CONTAINING GGGG TETRADS AND GC WATSON-CRICK BASE PAIRS
Authors:Bouaziz, S., Kettani, A., Patel, D.J.
Deposit date:1998-03-28
Release date:1998-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats.
J.Mol.Biol., 282, 1998
1AFF
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DNA QUADRUPLEX CONTAINING GGGG TETRADS AND (T.A).A TRIADS, NMR, 8 STRUCTURES
Descriptor:QUADRUPLEX DNA (5'-D(TP*AP*GP*G)-3')
Authors:Kettani, A., Bouaziz, S., Wang, W., Jones, R.A., Patel, D.J.
Deposit date:1997-03-06
Release date:1997-08-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads.
Nat.Struct.Biol., 4, 1997
1AM0
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AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES
Descriptor:RNA APTAMER, ADENOSINE MONOPHOSPHATE
Authors:Jiang, F., Kumar, R.A., Jones, R.A., Patel, D.J.
Deposit date:1997-06-19
Release date:1997-07-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis of RNA Folding and Recognition in an AMP-RNA Aptamer Complex
Nature, 382, 1996
1AW4
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STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES
Descriptor:ATP-BINDING DNA APTAMER, ADENOSINE MONOPHOSPHATE
Authors:Lin, C.H., Patel, D.J.
Deposit date:1997-10-09
Release date:1998-04-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP.
Chem.Biol., 4, 1997
1AX6
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SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES
Descriptor:DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG), 2-AMINOFLUORENE
Authors:Mao, B., Gorin, A.A., Gu, Z., Hingerty, B.E., Broyde, S., Patel, D.J.
Deposit date:1997-10-30
Release date:1998-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the aminofluorene-intercalated conformer of the syn [AF]-C8-dG adduct opposite a--2 deletion site in the NarI hot spot sequence context.
Biochemistry, 36, 1997
1AX7
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SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES
Descriptor:DNA DUPLEX D(AAC-[AF]G-CTACCATCC)D(GGATGGTAG), 2-AMINOFLUORENE
Authors:Mao, B., Gu, Z., Gorin, A.A., Hingerty, B.E., Broyde, S., Patel, D.J.
Deposit date:1997-10-30
Release date:1998-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the aminofluorene-stacked conformer of the syn [AF]-C8-dG adduct positioned at a template-primer junction.
Biochemistry, 36, 1997
1AXL
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SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES
Descriptor:DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
Authors:Feng, B., Gorin, A.A., Kolbanovskiy, A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.
Deposit date:1997-10-16
Release date:1998-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution conformation of the (-)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove.
Biochemistry, 36, 1997
1AXO
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STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES
Descriptor:DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC), 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
Authors:Feng, B., Gorin, A.A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.
Deposit date:1997-10-16
Release date:1998-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural alignment of the (+)-trans-anti-benzo[a]pyrene-dG adduct positioned opposite dC at a DNA template-primer junction.
Biochemistry, 36, 1997
1AXU
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SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES
Descriptor:DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG), N-1-AMINOPYRENE
Authors:Gu, Z., Gorin, A.A., Krishnasami, R., Hingerty, B.E., Basu, A.K., Broyde, S., Patel, D.J.
Deposit date:1997-10-21
Release date:1998-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex.
Biochemistry, 38, 1999
1AXV
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SOLUTION NMR STRUCTURE OF THE [BP]DA ADDUCT OPPOSITE DT IN A DNA DUPLEX, 6 STRUCTURES
Descriptor:DNA DUPLEX D(CTCTC-[BP]A-CTTCC)D(GGAAGTGAGAG), 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
Authors:Mao, B., Gu, Z., Gorin, A.A., Chen, J., Hingerty, B.E., Amid, S., Broyde, S., Geacintov, N.E., Patel, D.J.
Deposit date:1997-10-21
Release date:1998-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the (+)-cis-anti-benzo[a]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex.
Biochemistry, 38, 1999
1B3P
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5'-D(*GP*GP*AP*GP*GP*AP*T)-3'
Descriptor:DNA (5'-D(*GP*GP*AP*GP*GP*AP*T)-3')
Authors:Kettani, A., Bouaziz, S., Skripkin, E., Majumdar, A., Wang, W., Jones, R.A., Patel, D.J.
Deposit date:1998-12-14
Release date:1999-08-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Interlocked mismatch-aligned arrowhead DNA motifs.
Structure Fold.Des., 7, 1999
1B5K
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3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE THYMIDINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS
Descriptor:DNA (5'-D(*CP*GP*TP*AP*CP*EDCP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3')
Authors:Cullinan, D., Korobka, A., Grollman, A.P., Patel, D.J., Eisenberg, M., De Santos, C.L.
Deposit date:1999-01-07
Release date:1999-01-13
Last modified:2017-02-01
Method:SOLUTION NMR
Cite:NMR solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite thymidine: comparison with the duplex containing deoxyadenosine opposite the adduct.
Biochemistry, 35, 1996
1B6Y
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3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE ADENINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS, 2 STRUCTURES
Descriptor:5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
Authors:Korobka, A., Cullinan, D., Cosman, M., Grollman, A.P., Patel, D.J., Eisenberg, M., De Los Santos, C.
Deposit date:1999-01-19
Release date:1999-01-27
Last modified:2012-01-18
Method:SOLUTION NMR
Cite:Solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyadenosine, determined by NMR spectroscopy and restrained molecular dynamics.
Biochemistry, 35, 1996
1BIV
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BOVINE IMMUNODEFICIENCY VIRUS TAT-TAR COMPLEX, NMR, 5 STRUCTURES
Descriptor:BOVINE IMMUNODEFICIENCY VIRUS TAR RNA, BOVINE IMMUNODEFICIENCY VIRUS TAT PEPTIDE
Authors:Ye, X., Kumar, R.A., Patel, D.J.
Deposit date:1996-06-12
Release date:1996-12-23
Last modified:2016-05-25
Method:SOLUTION NMR
Cite:Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex.
Chem.Biol., 2, 1995
1C0Y
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SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED OPPOSITE DA AT A TEMPLATE-PRIMER JUNCTION
Descriptor:DNA (5'-D(*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*GP*TP*AP*GP*C)-3'), 2-AMINOFLUORENE
Authors:Gu, Z., Gorin, A., Hingerty, B.E., Broyde, S., Patel, D.J.
Deposit date:1999-07-19
Release date:1999-08-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of aminofluorene [AF]-stacked conformers of the syn [AF]-C8-dG adduct positioned opposite dC or dA at a template-primer junction.
Biochemistry, 38, 1999
1CR3
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SOLUTION CONFORMATION OF THE (+)TRANS-ANTI-BENZO[G]CHRYSENE-DA ADDUCT OPPOSITE DT IN A DNA DUPLEX
Descriptor:DNA (5'-D(*CP*TP*CP*TP*CP*AP*CP*TP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*TP*GP*AP*GP*AP*G)-3'), BENZO[G]CHRYSENE
Authors:Suri, A.K., Mao, B., Amin, S., Geacintov, N.E., Patel, D.J.
Deposit date:1999-08-12
Release date:2000-02-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution conformation of the (+)-trans-anti-benzo[g]chrysene-dA adduct opposite dT in a DNA duplex.
J.Mol.Biol., 292, 1999
1D6D
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SOLUTION DNA STRUCTURE CONTAINING (A-A)-T TRIADS INTERDIGITATED BETWEEN A-T BASE PAIRS AND GGGG TETRADS; NMR, 8 STRUCT.
Descriptor:5'-D(*AP*AP*GP*GP*TP*TP*TP*TP*AP*AP*GP*G)-3'
Authors:Kuryavyi, V.V., Kettani, A., Wang, W., Jones, R., Patel, D.J.
Deposit date:1999-10-13
Release date:2000-01-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A diamond-shaped zipper-like DNA architecture containing triads sandwiched between mismatches and tetrads.
J.Mol.Biol., 295, 2000
1D83
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STRUCTURE REFINEMENT OF THE CHROMOMYCIN DIMER/DNA OLIGOMER COMPLEX IN SOLUTION
Descriptor:DNA (5'-D(*AP*AP*GP*GP*CP*CP*TP*T)-3'), 2,3-DIDEOXYFUCOSE, 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE, ...
Authors:Gao, X., Mirau, P., Patel, D.J.
Deposit date:1992-07-22
Release date:1993-07-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure refinement of the chromomycin dimer-DNA oligomer complex in solution.
J.Mol.Biol., 223, 1992
1EEG
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A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) SEQUENCE
Descriptor:DNA (5'-D(*GP*GP*AP*GP*GP*A)-3')
Authors:Kettani, A., Gorin, A., Majumdar, A., Hermann, T., Skripkin, E., Zhao, H., Jones, R., Patel, D.J.
Deposit date:2000-01-31
Release date:2000-04-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations.
J.Mol.Biol., 297, 2000
1EXY
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SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET
Descriptor:RNA APTAMER, 33-MER, HTLV-1 REX PEPTIDE
Authors:Jiang, F., Gorin, A., Hu, W., Majumdar, A., Baskerville, S., Xu, W., Ellington, A., Patel, D.J.
Deposit date:2000-05-05
Release date:2000-05-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples.
Structure Fold.Des., 7, 1999
1F3S
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SOLUTION STRUCTURE OF DNA SEQUENCE GGGTTCAGG FORMS GGGG TETRADE AND G(C-A) TRIAD.
Descriptor:DNA (5'-D(*GP*GP*GP*TP*TP*CP*AP*GP*G)-3')
Authors:Kettani, A., Basu, G., Gorin, A., Majumdar, A., Skripkin, E., Patel, D.J.
Deposit date:2000-06-06
Release date:2000-11-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A two-stranded template-based approach to G.(C-A) triad formation: designing novel structural elements into an existing DNA framework.
J.Mol.Biol., 301, 2000
1FJ5
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TAMOXIFEN-DNA ADDUCT
Descriptor:DNA (5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3'), (Z)-2-[4-(1,2)-DIPHENYL-1-BUTENYL)-PHENOXY]-N,N-DIMETHYLETHANAMINIUM
Authors:Shimotakahara, S., Gorin, A., Kolbanovskiy, A., Kettani, A., Hingerty, B.E., Amin, S., Broyde, S., Geacintov, N., Patel, D.J.
Deposit date:2000-08-07
Release date:2000-09-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Accomodation of S-cis-tamoxifen-N(2)-guanine adduct within a bent and widened DNA minor groove.
J.Mol.Biol., 302, 2000
1FJA
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NMR STUDY OF DEOXYRIBONUCLEIC ACID COMPLEXED WITH ACTINOMYCIN D
Descriptor:DNA (5'-D(*AP*AP*GP*CP*GP*CP*TP*T)-3'), ACTINOMYCIN D
Authors:Chen, H., Liu, X., Patel, D.J.
Deposit date:1995-12-15
Release date:1996-06-10
Last modified:2012-12-12
Method:SOLUTION NMR
Cite:DNA Bending and Unwinding Associated with Actinomycin D Antibiotics Bound to Partially Overlapping Sites on DNA.
J.Mol.Biol., 258, 1996
1FJB
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NMR STUDY OF AN 11-MER DNA DUPLEX CONTAINING 7,8-DIHYDRO-8-OXOADENINE (AOXO) OPPOSITE THYMINE
Descriptor:DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*AP*CP*(A38)P*CP*AP*TP*GP*C)-3')
Authors:Chen, H., Johnson, F., Grollman, A.P., Patel, D.J.
Deposit date:1995-12-15
Release date:1996-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Studies of the Ionizing Radiation Adduct 7,8-Dihydro-8-Oxoadenine (A Oxo) Positioned Opposite Thymine and Guanine in DNA Duplexes
MAGN.RESON.CHEM., 34, 1996