3D79
 
 | | Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3 | | Descriptor: | Putative uncharacterized protein PH0734 | | Authors: | Nishimura, Y, Miyazono, K, Sawano, Y, Makino, T, Nagata, K, Tanokura, M. | | Deposit date: | 2008-05-20 | | Release date: | 2008-12-09 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.73 Å) | | Cite: | Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 73, 2008
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1VFC
 | | Solution Structure Of The DNA Complex Of Human Trf2 | | Descriptor: | Short C-rich starnd, Short G-rich strand, Telomeric repeat binding factor 2 | | Authors: | Nishimura, Y, Hanaoka, S. | | Deposit date: | 2004-04-12 | | Release date: | 2005-05-17 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
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1VF9
 | | Solution Structure Of Human Trf2 | | Descriptor: | Telomeric repeat binding factor 2 | | Authors: | Nishimura, Y, Hanaoka, S. | | Deposit date: | 2004-04-12 | | Release date: | 2005-05-17 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
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1MBH
 | | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2 | | Descriptor: | C-MYB | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-05-19 | | Release date: | 1995-09-15 | | Last modified: | 2012-02-29 | | Method: | SOLUTION NMR | | Cite: | Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
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1MBK
 | | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 | | Descriptor: | MYB PROTO-ONCOGENE PROTEIN | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-05-19 | | Release date: | 1995-07-31 | | Last modified: | 2012-02-29 | | Method: | SOLUTION NMR | | Cite: | Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
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1MBF
 | | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1 | | Descriptor: | MYB PROTO-ONCOGENE PROTEIN | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-05-19 | | Release date: | 1995-07-31 | | Last modified: | 2012-02-29 | | Method: | SOLUTION NMR | | Cite: | Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
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1MBE
 | | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1 | | Descriptor: | MYB PROTO-ONCOGENE PROTEIN | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-05-19 | | Release date: | 1995-07-31 | | Last modified: | 2012-02-29 | | Method: | SOLUTION NMR | | Cite: | Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
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1MBJ
 | | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 | | Descriptor: | MYB PROTO-ONCOGENE PROTEIN | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-05-19 | | Release date: | 1995-07-31 | | Last modified: | 2012-02-29 | | Method: | SOLUTION NMR | | Cite: | Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
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1MBG
 | | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2 | | Descriptor: | MYB PROTO-ONCOGENE PROTEIN | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-05-19 | | Release date: | 1995-07-31 | | Last modified: | 2012-02-29 | | Method: | SOLUTION NMR | | Cite: | Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
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3J3Z
 | | Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment | | Descriptor: | MA28-7 neutralizing antibody heavy chain, MA28-7 neutralizing antibody light chain | | Authors: | Lee, H, Cifuente, J.O, Ashley, R.E, Conway, J.F, Makhov, A.M, Tano, Y, Shimizu, H, Nishimura, Y, Hafenstein, S. | | Deposit date: | 2013-05-21 | | Release date: | 2013-08-28 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (23.4 Å) | | Cite: | A strain-specific epitope of enterovirus 71 identified by cryo-electron microscopy of the complex with fab from neutralizing antibody.
J.Virol., 87, 2013
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2CZY
 | | Solution structure of the NRSF/REST-mSin3B PAH1 complex | | Descriptor: | Paired amphipathic helix protein Sin3b, transcription factor REST (version 3) | | Authors: | Nomura, M, Uda-Tochio, H, Murai, K, Mori, N, Nishimura, Y. | | Deposit date: | 2005-07-20 | | Release date: | 2005-12-20 | | Last modified: | 2022-03-09 | | Method: | SOLUTION NMR | | Cite: | The Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix
J.Mol.Biol., 354, 2005
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1D8K
 | | SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA | | Descriptor: | GENERAL TRANSCRIPTION FACTOR TFIIE-BETA | | Authors: | Okuda, M, Watanabe, Y, Okamura, H, Hanaoka, F, Ohkuma, Y, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 1999-10-25 | | Release date: | 2000-04-26 | | Last modified: | 2022-02-16 | | Method: | SOLUTION NMR | | Cite: | Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
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1D8J
 | | SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA | | Descriptor: | GENERAL TRANSCRIPTION FACTOR TFIIE-BETA | | Authors: | Okuda, M, Watanabe, Y, Okamura, H, Hanaoka, F, Ohkuma, Y, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 1999-10-25 | | Release date: | 2000-04-26 | | Last modified: | 2022-02-16 | | Method: | SOLUTION NMR | | Cite: | Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
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8I53
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1MSF
 | | SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES | | Descriptor: | C-Myb DNA-Binding Domain, DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3') | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Sekikawa, A, Inoue, T, Kanai, H, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-01-24 | | Release date: | 1995-03-31 | | Last modified: | 2022-02-23 | | Method: | SOLUTION NMR | | Cite: | Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
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1MSE
 | | SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES | | Descriptor: | C-Myb DNA-Binding Domain, DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3') | | Authors: | Ogata, K, Morikawa, S, Nakamura, H, Sekikawa, A, Inoue, T, Kanai, H, Sarai, A, Ishii, S, Nishimura, Y. | | Deposit date: | 1995-01-24 | | Release date: | 1995-03-31 | | Last modified: | 2022-02-23 | | Method: | SOLUTION NMR | | Cite: | Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
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2RO0
 | | Solution structure of the knotted tudor domain of the yeast histone acetyltransferase, Esa1 | | Descriptor: | Histone acetyltransferase ESA1 | | Authors: | Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y. | | Deposit date: | 2008-03-01 | | Release date: | 2008-04-29 | | Last modified: | 2022-03-16 | | Method: | SOLUTION NMR | | Cite: | Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
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2RNZ
 | | Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1 | | Descriptor: | Histone acetyltransferase ESA1 | | Authors: | Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y. | | Deposit date: | 2008-03-01 | | Release date: | 2008-04-29 | | Last modified: | 2022-03-16 | | Method: | SOLUTION NMR | | Cite: | Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
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2RVQ
 | | Solution structure of the isolated histone H2A-H2B heterodimer | | Descriptor: | Histone H2A type 1-B/E, Histone H2B type 1-J | | Authors: | Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y. | | Deposit date: | 2016-03-28 | | Release date: | 2016-05-25 | | Method: | SOLUTION NMR | | Cite: | Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
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7DTI
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1VD4
 | | Solution structure of the zinc finger domain of TFIIE alpha | | Descriptor: | Transcription initiation factor IIE, alpha subunit, ZINC ION | | Authors: | Okuda, M, Tanaka, A, Arai, Y, Satoh, M, Okamura, H, Nagadoi, A, Hanaoka, F, Ohkuma, Y, Nishimura, Y. | | Deposit date: | 2004-03-18 | | Release date: | 2004-10-05 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.
J.Biol.Chem., 279, 2004
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2RNQ
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2RNR
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2RSN
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2RSO
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