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5B5J
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BU of 5b5j by Molmil
Hen egg white lysozyme with boron tracedrug UTX-97
Descriptor: 2-cyano-3-((6-(((2-((2-cyanoethyl)(borocaptate-10B)sulfonio)acetyl)carbamoyl)oxy)hexyl)amino)quinoxaline 1,4-dioxide, Lysozyme C, SODIUM ION
Authors:Morimoto, Y.
Deposit date:2016-05-11
Release date:2017-06-28
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structural Insight Into Protein Binding of Boron Tracedrug UTX-97 Revealed by the Co-Crystal Structure With Lysozyme at 1.26 angstrom Resolution.
J Pharm Sci, 105, 2016
3AB5
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BU of 3ab5 by Molmil
Crystal structure of the 2Fe 2S Ferredoxin from Cyanidioschyzon merolae
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin
Authors:Morimoto, Y, Imai, T, Ozawa, Y.
Deposit date:2009-12-01
Release date:2010-11-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystal structure of the 2Fe 2S Ferredoxin from Cyanidioschyzon merolae at 1.18A resolution.
To be Published
2CYM
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BU of 2cym by Molmil
EFFECTS OF AMINO ACID SUBSTITUTION ON THREE-DIMENSIONAL STRUCTURE: AN X-RAY ANALYSIS OF CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH AT 2 ANGSTROMS RESOLUTION
Descriptor: CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Morimoto, Y, Tani, T, Okumura, H, Higuchi, Y, Yasuoka, N.
Deposit date:1993-09-29
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effects of amino acid substitution on three-dimensional structure: an X-ray analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A resolution.
J.Biochem.(Tokyo), 110, 1991
5EVY
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BU of 5evy by Molmil
Salicylate hydroxylase substrate complex
Descriptor: 2-HYDROXYBENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Salicylate hydroxylase
Authors:Morimoto, Y, Uemura, T.
Deposit date:2015-11-20
Release date:2015-12-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:The catalytic mechanism of decarboxylative hydroxylation of salicylate hydroxylase revealed by crystal structure analysis at 2.5 angstrom resolution
Biochem.Biophys.Res.Commun., 469, 2016
2DU2
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BU of 2du2 by Molmil
Crystal Structure Analysis of the L-Lactate Oxidase
Descriptor: FLAVIN MONONUCLEOTIDE, Lactate oxidase
Authors:Morimoto, Y.
Deposit date:2006-07-19
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of L-lactate oxidase from Aerococcus viridans at 2.1A resolution reveals the mechanism of strict substrate recognition
Biochem.Biophys.Res.Commun., 350, 2006
2E77
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BU of 2e77 by Molmil
Crystal structure of L-lactate oxidase with pyruvate complex
Descriptor: FLAVIN MONONUCLEOTIDE, Lactate oxidase, PYRUVIC ACID
Authors:Morimoto, Y.
Deposit date:2007-01-06
Release date:2007-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic study on the interaction of L-lactate oxidase with pyruvate at 1.9 Angstrom resolution.
Biochem.Biophys.Res.Commun., 358, 2007
2DXM
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BU of 2dxm by Molmil
Neutron Structure Analysis of Deoxy Human Hemoglobin
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Morimoto, Y.
Deposit date:2006-08-28
Release date:2007-12-04
Last modified:2024-03-13
Method:NEUTRON DIFFRACTION (2.1 Å)
Cite:Protonation states of buried histidine residues in human deoxyhemoglobin revealed by neutron crystallography.
J.Am.Chem.Soc., 129, 2007
7F20
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BU of 7f20 by Molmil
L-lactate oxidase with L-lactate
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, FLAVIN MONONUCLEOTIDE, L-lactate oxidase
Authors:Morimoto, Y, Inaka, K.
Deposit date:2021-06-10
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5.
Biochem.Biophys.Res.Commun., 568, 2021
7F22
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BU of 7f22 by Molmil
L-lactate oxidase with pyruvate
Descriptor: FLAVIN MONONUCLEOTIDE, L-lactate oxidase, PYRUVIC ACID
Authors:Morimoto, Y, Inaka, K.
Deposit date:2021-06-10
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5.
Biochem.Biophys.Res.Commun., 568, 2021
7F21
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BU of 7f21 by Molmil
L-lactate oxidase with D-lactate
Descriptor: FLAVIN MONONUCLEOTIDE, L-lactate oxidase, LACTIC ACID
Authors:Morimoto, Y, Inaka, K.
Deposit date:2021-06-10
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5.
Biochem.Biophys.Res.Commun., 568, 2021
7F1Y
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BU of 7f1y by Molmil
L-lactate oxidase without substrate
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FLAVIN MONONUCLEOTIDE, ...
Authors:Morimoto, Y, Inaka, K.
Deposit date:2021-06-10
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5.
Biochem.Biophys.Res.Commun., 568, 2021
3KMF
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BU of 3kmf by Molmil
Room Temperature Time-of-Flight Neutron Diffraction Study of Deoxy Human Normal Adult Hemoglobin
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kovalevsky, A.Y, Morimoto, Y, Chatake, T.
Deposit date:2009-11-10
Release date:2010-04-21
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Direct Determination of Protonation States of Histidine Residues in a 2 A Neutron Structure of Deoxy-Human Normal Adult Hemoglobin and Implications for the Bohr Effect.
J.Mol.Biol., 398, 2010
1EEX
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BU of 1eex by Molmil
CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
Descriptor: CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
Authors:Shibata, N, Masuda, J, Toraya, T, Morimoto, Y, Yasuoka, N.
Deposit date:2000-02-04
Release date:2001-02-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGV
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BU of 1egv by Molmil
CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.
Descriptor: CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
Authors:Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N.
Deposit date:2000-02-17
Release date:2001-02-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGM
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BU of 1egm by Molmil
CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.
Descriptor: CYANOCOBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
Authors:Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N.
Deposit date:2000-02-15
Release date:2000-09-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1IRU
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BU of 1iru by Molmil
Crystal Structure of the mammalian 20S proteasome at 2.75 A resolution
Descriptor: 20S proteasome, MAGNESIUM ION
Authors:Unno, M, Mizushima, T, Morimoto, Y, Tomisugi, Y, Tanaka, K, Yasuoka, N, Tsukihara, T.
Deposit date:2001-10-24
Release date:2002-05-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The structure of the mammalian 20S proteasome at 2.75 A resolution.
Structure, 10, 2002
1QVC
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BU of 1qvc by Molmil
CRYSTAL STRUCTURE ANALYSIS OF SINGLE STRANDED DNA BINDING PROTEIN (SSB) FROM E.COLI
Descriptor: SINGLE STRANDED DNA BINDING PROTEIN MONOMER
Authors:Matsumoto, T, Morimoto, Y, Shibata, N, Shimamoto, N, Tsukihara, T, Yasuoka, N.
Deposit date:1999-07-07
Release date:2000-06-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis.
J.Biochem.(Tokyo), 127, 2000
2CVC
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BU of 2cvc by Molmil
Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough)
Descriptor: HEME C, High-molecular-weight cytochrome c precursor
Authors:Suto, K, Sato, M, Shibata, N, Kitamura, M, Morimoto, Y, Takayama, Y, Ozawa, K, Akutsu, H, Higuchi, Y, Yasuoka, N.
Deposit date:2005-06-02
Release date:2006-06-06
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of High-Molecular Weight Cytochrome c
To be Published
2E84
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BU of 2e84 by Molmil
Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion
Descriptor: High-molecular-weight cytochrome c, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
Authors:Shibata, N, Suto, K, Sato, M, Morimoto, Y, Kitamura, M, Higuchi, Y.
Deposit date:2007-01-17
Release date:2008-01-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F)
To be Published
5B06
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BU of 5b06 by Molmil
Lysozyme (denatured by NaOD and refolded)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Kita, A, Morimoto, Y.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes
Mol Biotechnol., 58, 2016
5B05
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BU of 5b05 by Molmil
Lysozyme (control experiment)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Kita, A, Morimoto, Y.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes
Mol Biotechnol., 58, 2016
5B07
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BU of 5b07 by Molmil
Lysozyme (denatured by DCl and refolded)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Kita, A, Morimoto, Y.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes
Mol Biotechnol., 58, 2016
1DIO
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BU of 1dio by Molmil
DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
Descriptor: COBALAMIN, POTASSIUM ION, PROTEIN (DIOL DEHYDRATASE), ...
Authors:Shibata, N, Masuda, J, Tobimatsu, T, Toraya, T, Suto, K, Morimoto, Y, Yasuoka, N.
Deposit date:1999-01-27
Release date:2000-01-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.
Structure Fold.Des., 7, 1999
1EQQ
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BU of 1eqq by Molmil
SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Descriptor: 5'-R(*(5MU)P*(5MU)P*(5MU))-3', SINGLE STRANDED DNA BINDING PROTEIN
Authors:Matsumoto, T, Morimoto, Y, Shibata, N, Yasuoka, N, Shimamoto, N.
Deposit date:2000-04-06
Release date:2003-09-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis
J.Biochem.(Tokyo), 127, 2000
1IWB
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BU of 1iwb by Molmil
Crystal structure of diol dehydratase
Descriptor: COBALAMIN, DIOL DEHYDRATASE alpha chain, DIOL DEHYDRATASE beta chain, ...
Authors:Shibata, N, Masuda, J, Morimoto, Y, Yasuoka, N, Toraya, T.
Deposit date:2002-05-01
Release date:2003-05-01
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase
Biochemistry, 41, 2002

 

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