Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1J1G
DownloadVisualize
BU of 1j1g by Molmil
Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1F
DownloadVisualize
BU of 1j1f by Molmil
Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, RIBONUCLEASE MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1UCG
DownloadVisualize
BU of 1ucg by Molmil
Crystal structure of Ribonuclease MC1 N71T mutant
Descriptor: MANGANESE (II) ION, Ribonuclease MC
Authors:Suzuki, A, Numata, T, Yao, M, Tanaka, I, Kimura, M.
Deposit date:2003-04-14
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
1X0T
DownloadVisualize
BU of 1x0t by Molmil
Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
Descriptor: Ribonuclease P protein component 4, ZINC ION
Authors:Kakuta, Y, Ishimatsu, I, Numata, T, Kimura, K, Yao, M, Tanaka, I, Kimura, M.
Deposit date:2005-03-29
Release date:2005-11-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
1WN5
DownloadVisualize
BU of 1wn5 by Molmil
Crystal Structure of Blasticidin S Deaminase (BSD) Complexed with Cacodylic Acid
Descriptor: Blasticidin-S deaminase, CACODYLATE ION, ZINC ION
Authors:Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
Deposit date:2004-07-27
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
1WN6
DownloadVisualize
BU of 1wn6 by Molmil
Crystal Structure of Blasticidin S Deaminase (BSD) Complexed with Tetrahedral Intermediate of Blasticidin S
Descriptor: 6-(4-AMINO-4-HYDROXY-2-OXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-3-[3-AMINO-5-(N-METHYL-GUANIDINO)-PENT ANOYLAMINO]-3,6-DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID, ARSENIC, Blasticidin-S deaminase, ...
Authors:Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
Deposit date:2004-07-27
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
1V9H
DownloadVisualize
BU of 1v9h by Molmil
Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
Descriptor: Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
Authors:Kimura, K, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2004-01-26
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
2Z3I
DownloadVisualize
BU of 2z3i by Molmil
Crystal structure of blasticidin S deaminase (BSD) mutant E56Q complexed with substrate
Descriptor: BLASTICIDIN S, Blasticidin-S deaminase, CACODYLATE ION, ...
Authors:Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3H
DownloadVisualize
BU of 2z3h by Molmil
Crystal structure of blasticidin S deaminase (BSD) complexed with deaminohydroxy blasticidin S
Descriptor: 1-(4-{[(3R)-3-AMINO-5-{[(Z)-AMINO(IMINO)METHYL](METHYL)AMINO}PENTANOYL]AMINO}-2,3,4-TRIDEOXY-D-ERYTHRO-HEX-2-ENOPYRANURONOSYL)-4-HYDROXYPYRIMIDIN-2(1H)-ONE, Blasticidin-S deaminase, ZINC ION
Authors:Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3J
DownloadVisualize
BU of 2z3j by Molmil
Crystal structure of blasticidin S deaminase (BSD) R90K mutant
Descriptor: Blasticidin-S deaminase, CACODYLATE ION, CHLORIDE ION, ...
Authors:Teh, A.H, Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3G
DownloadVisualize
BU of 2z3g by Molmil
Crystal structure of blasticidin S deaminase (BSD)
Descriptor: Blasticidin-S deaminase, ZINC ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2CZW
DownloadVisualize
BU of 2czw by Molmil
Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P
Descriptor: 50S ribosomal protein L7Ae
Authors:Fukuhara, H, Kifusa, M, Watanabe, M, Terada, A, Honda, T, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2005-07-19
Release date:2006-04-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 343, 2006
1J3A
DownloadVisualize
BU of 1j3a by Molmil
Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii
Descriptor: 50S ribosomal protein L13P
Authors:Nakashima, T, Tanaka, M, Kazama, T, Kawamura, S, Kimura, M, Yao, M, Tanaka, I.
Deposit date:2003-01-21
Release date:2003-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
1VB5
DownloadVisualize
BU of 1vb5 by Molmil
Crystal Structure Analysis of the Pyrococcus horikoshii OT3 translation initiation factor eIF-2B
Descriptor: translation initiation factor eIF-2B
Authors:Kakuta, Y, Tahara, M, Maetani, S, Kimura, M.
Deposit date:2004-02-22
Release date:2004-12-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the regulatory subunit of archaeal initiation factor 2B (aIF2B) from hyperthermophilic archaeon Pyrococcus horikoshii OT3: a proposed structure of the regulatory subcomplex of eukaryotic IF2B
Biochem.Biophys.Res.Commun., 319, 2004
3AP2
DownloadVisualize
BU of 3ap2 by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-2 complexed with PAP,C4 peptide, and phosphate ion
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, C4 peptide, GLYCEROL, ...
Authors:Teramoto, T, Fujikawa, Y, Kawaguchi, Y, Kurogi, K, Soejima, M, Adachi, R, Nakanishi, Y, Mishiro-Sato, E, Liu, M.-C, Sakakibara, Y, Suiko, M, Kimura, M, Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2: Insights into substrate-binding and catalysis of post-translational protein tyrosine sulfation
To be Published
3AP3
DownloadVisualize
BU of 3ap3 by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-2 complexed with PAP
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Protein-tyrosine sulfotransferase 2
Authors:Teramoto, T, Fujikawa, Y, Kawaguchi, Y, Kurogi, K, Soejima, M, Adachi, R, Nakanishi, Y, Mishiro-Sato, E, Liu, M.-C, Sakakibara, Y, Suiko, M, Kimura, M, Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
3AP1
DownloadVisualize
BU of 3ap1 by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-2 complexed with PAP and C4 peptide
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, C4 peptide, GLYCEROL, ...
Authors:Teramoto, T, Fujikawa, Y, Kawaguchi, Y, Kurogi, K, Soejima, M, Adachi, R, Nakanishi, Y, Mishiro-Sato, E, Liu, M.-C, Sakakibara, Y, Suiko, M, Kimura, M, Kakuta, Y.
Deposit date:2010-10-09
Release date:2011-10-26
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
2ZAE
DownloadVisualize
BU of 2zae by Molmil
Crystal structure of protein Ph1601p in complex with protein Ph1771p of archaeal ribonuclease P from Pyrococcus horikoshii OT3
Descriptor: GLYCEROL, NITRATE ION, Ribonuclease P protein component 1, ...
Authors:Honda, T, Kakuta, Y, Kimura, M.
Deposit date:2007-10-04
Release date:2008-10-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of an archaeal homolog of the human protein complex Rpp21-Rpp29 that is a key core component for the assembly of active ribonuclease P.
J.Mol.Biol., 384, 2008
1IQ4
DownloadVisualize
BU of 1iq4 by Molmil
5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS
Descriptor: 50S RIBOSOMAL PROTEIN L5
Authors:Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I.
Deposit date:2001-06-13
Release date:2001-06-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
1IZ6
DownloadVisualize
BU of 1iz6 by Molmil
Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii
Descriptor: Initiation Factor 5A
Authors:Yao, M, Ohsawa, A, Kikukawa, S, Tanaka, I, Kimura, M.
Deposit date:2002-09-25
Release date:2003-01-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
1IQV
DownloadVisualize
BU of 1iqv by Molmil
Crystal Structure Analysis of the archaebacterial ribosomal protein S7
Descriptor: RIBOSOMAL PROTEIN S7
Authors:Hosaka, H, Yao, M, Kimura, M, Tanaka, I.
Deposit date:2001-08-07
Release date:2001-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
J.Biochem., 130, 2001
2ZWI
DownloadVisualize
BU of 2zwi by Molmil
Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, Photobacterium phosphoreum
Descriptor: Alpha-/beta-galactoside alpha-2,3-sialyltransferase, CHLORIDE ION, CYTIDINE-5'-MONOPHOSPHATE, ...
Authors:Iwatani, T, Okino, N, Sakakura, M, Kajiwara, H, Ichikawa, M, Takakura, Y, Kimura, M, Ito, M, Yamamoto, T, Kakuta, Y.
Deposit date:2008-12-05
Release date:2009-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of alpha/beta-galactoside alpha2,3-sialyltransferase from a luminous marine bacterium, Photobacterium phosphoreum
Febs Lett., 583, 2009
1UCA
DownloadVisualize
BU of 1uca by Molmil
Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 2'-UMP
Descriptor: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, Ribonuclease MC
Authors:Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
Deposit date:2003-04-10
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1UCD
DownloadVisualize
BU of 1ucd by Molmil
Crystal structure of Ribonuclease MC1 from bitter gourd seeds complexed with 5'-UMP
Descriptor: Ribonuclease MC, URACIL, URIDINE-5'-MONOPHOSPHATE
Authors:Suzuki, A, Numata, T, Yao, M, Kimura, M, Tanaka, I.
Deposit date:2003-04-10
Release date:2004-05-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of RNase MC1 from bitter gourd seeds in complex with 5'UMP
To be published
1UCC
DownloadVisualize
BU of 1ucc by Molmil
Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 3'-UMP.
Descriptor: 3'-URIDINEMONOPHOSPHATE, Ribonuclease MC
Authors:Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
Deposit date:2003-04-10
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000

 

1234>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon