Author results

1IQZ
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1IR0
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
2ZOX
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CRYSTAL STRUCTURE OF THE COVALENT INTERMEDIATE OF HUMAN CYTOSOLIC BETA-GLUCOSIDASE
Descriptor:Cytosolic beta-glucosidase, ALPHA-D-GLUCOSE, 4'-NITROPHENYL-ALPHA-D-GLUCOPYRANOSIDE, ...
Authors:Noguchi, J., Hayashi, Y., Baba, Y., Okino, N., Kimura, M., Ito, M., Kakuta, Y.
Deposit date:2008-06-17
Release date:2008-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the covalent intermediate of human cytosolic beta-glucosidase
Biochem.Biophys.Res.Commun., 374, 2008
1DVE
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CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME
Descriptor:HEME OXYGENASE-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M., Omata, Y., Kakuta, Y., Sakamoto, H., Noguchi, M., Fukuyama, K.
Deposit date:2000-01-20
Release date:2000-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett., 471, 2000
1DVG
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CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME; SELELENO-METHIONINE DERIVATIVE, MUTATED AT M51T,M93L,M155L,M191L.
Descriptor:HEME OXYGENASE-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M., Omata, Y., Kakuta, Y., Sakamoto, H., Noguchi, M., Fukuyama, K.
Deposit date:2000-01-20
Release date:2000-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett., 471, 2000
1IYZ
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CRYSTAL STRUCTURES OF THE QUINONE OXIDOREDUCTASE FROM THERMUS THERMOPHILUS HB8 AND ITS COMPLEX WITH NADPH
Descriptor:QUINONE OXIDOREDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition
J.Bacteriol., 185, 2003
1IZ0
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CRYSTAL STRUCTURES OF THE QUINONE OXIDOREDUCTASE FROM THERMUS THERMOPHILUS HB8 AND ITS COMPLEX WITH NADPH
Descriptor:QUINONE OXIDOREDUCTASE, SULFATE ION
Authors:Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition
J.Bacteriol., 185, 2003
1J1F
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71T IN COMPLEX WITH 5'-GMP
Descriptor:RIBONUCLEASE MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1G
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71S IN COMPLEX WITH 5'-GMP
Descriptor:Ribonuclease MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1UAR
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CRYSTAL STRUCTURE OF RHODANESE FROM THERMUS THERMOPHILUS HB8
Descriptor:Rhodanese, GLYCEROL
Authors:Suzuki, Y., Kakuta, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-17
Release date:2004-09-21
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Rhodanese from Thermus thermophilus HB8
To be published
2DQA
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CRYSTAL STRUCTURE OF TAPES JAPONICA LYSOZYME
Descriptor:Lysozyme, PLATINUM (II) ION, BETA-D-GLUCOSE, ...
Authors:Goto, T., Kakuta, Y., Abe, Y., Takeshita, K., Imoto, T., Ueda, T.
Deposit date:2006-05-24
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Tapes japonica Lysozyme with Substrate Analogue: STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND MANIFESTATION OF ITS CHITINASE ACTIVITY ACCOMPANIED BY QUATERNARY STRUCTURAL CHANGE
J.Biol.Chem., 282, 2007
2E2R
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CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEX WITH BISPHENOL A
Descriptor:Estrogen-related receptor gamma, 4,4'-PROPANE-2,2-DIYLDIPHENOL, GLYCEROL
Authors:Matsushima, A., Kakuta, Y., Teramoto, T., Koshiba, T., Kimura, M., Shimohigashi, Y.
Deposit date:2006-11-16
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Evidence for Endocrine Disruptor Bisphenol A Binding to Human Nuclear Receptor ERR{gamma}
J.Biochem.(Tokyo), 142, 2007
2Z6V
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CRYSTAL STRUCTURE OF SULFOTRANSFERASE STF9 FROM MYCOBACTERIUM AVIUM
Descriptor:Putative uncharacterized protein, SULFATE ION, PALMITIC ACID
Authors:Hassain, M.M., Moriizumi, Y., Tanaka, S., Kimura, M., Kakuta, Y.
Deposit date:2007-08-09
Release date:2008-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of sulfotransferase STF9 from Mycobacterium avium
To be Published
2ZAS
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CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEX WITH 4-ALPHA-CUMYLPHENOL, A BISPHENOL A DERIVATIVE
Descriptor:Estrogen-related receptor gamma, 4-(1-methyl-1-phenylethyl)phenol, GLYCEROL
Authors:Matsushima, A., Kakuta, Y., Teramoto, T., Shimohigashi, Y.
Deposit date:2007-10-09
Release date:2008-10-07
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner
Biochem.Biophys.Res.Commun., 373, 2008
2ZBS
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CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA LIGAND BINDING DOMAIN APO FORM
Descriptor:Estrogen-related receptor gamma
Authors:Matsushima, A., Kakuta, Y., Teramoto, T., Shimohigashi, Y.
Deposit date:2007-10-27
Release date:2008-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner
Biochem.Biophys.Res.Commun., 373, 2008
2ZKC
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CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEX WITH BISPHENOL Z
Descriptor:Estrogen-related receptor gamma, 4,4'-cyclohexane-1,1-diyldiphenol, GLYCEROL
Authors:Matsushima, A., Kakuta, Y., Teramoto, T., Shimohigashi, Y.
Deposit date:2008-03-14
Release date:2009-03-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol Z
To be Published
2ZPT
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CRYSTAL STRUCTURE OF MOUSE SULFOTRANSFERASE SULT1D1 COMPLEX WITH PAP
Descriptor:Tyrosine-ester sulfotransferase, ADENOSINE-3'-5'-DIPHOSPHATE, GLYCEROL
Authors:Teramoto, T., Sakakibara, Y., Inada, K., Liu, M.C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2008-07-28
Release date:2008-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structure of mSULT1D1, a mouse catecholamine sulfotransferase
Febs Lett., 582, 2008
2ZVP
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAP AND P-NITROPHENOL
Descriptor:Tyrosine-ester sulfotransferase, ADENOSINE-3'-5'-DIPHOSPHATE, P-NITROPHENOL, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2008-11-14
Release date:2008-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis for the broad range substrate specificity of a novel mouse cytosolic sulfotransferase--mSULT1D1
Biochem.Biophys.Res.Commun., 379, 2009
2ZVQ
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAP AND ALPHA-NAPHTHOL
Descriptor:Tyrosine-ester sulfotransferase, ADENOSINE-3'-5'-DIPHOSPHATE, 1-NAPHTHOL, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2008-11-14
Release date:2008-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis for the broad range substrate specificity of a novel mouse cytosolic sulfotransferase--mSULT1D1
Biochem.Biophys.Res.Commun., 379, 2009
2ZWI
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CRYSTAL STRUCTURE OF ALPHA/BETA-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE FROM A LUMINOUS MARINE BACTERIUM, PHOTOBACTERIUM PHOSPHOREUM
Descriptor:Alpha-/beta-galactoside alpha-2,3-sialyltransferase, CYTIDINE-5'-MONOPHOSPHATE, ZINC ION, ...
Authors:Iwatani, T., Okino, N., Sakakura, M., Kajiwara, H., Ichikawa, M., Takakura, Y., Kimura, M., Ito, M., Yamamoto, T., Kakuta, Y.
Deposit date:2008-12-05
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of alpha/beta-galactoside alpha2,3-sialyltransferase from a luminous marine bacterium, Photobacterium phosphoreum
Febs Lett., 583, 2009
2ZYT
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAPS
Descriptor:Tyrosine-ester sulfotransferase, 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, GLYCEROL
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYU
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAPS AND P-NITROPHENYL SULFATE
Descriptor:Tyrosine-ester sulfotransferase, 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, 4-nitrophenyl sulfate, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYV
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAPS/PAP AND P-NITROPHENOL
Descriptor:Tyrosine-ester sulfotransferase, 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, P-NITROPHENOL, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYW
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CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAP AND P-NITROPHENOL, OBTAINED BY TWO-STEP SOAKING METHOD
Descriptor:Tyrosine-ester sulfotransferase, ADENOSINE-3'-5'-DIPHOSPHATE, P-NITROPHENOL, ...
Authors:Teramoto, T., Sakakibara, Y., Liu, M.-C., Suiko, M., Kimura, M., Kakuta, Y.
Deposit date:2009-01-29
Release date:2009-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
3VKK
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CRYSTAL STRUCTURE OF THE COVALENT INTERMEDIATE OF HUMAN CYTOSOLIC BETA-GLUCOSIDASE-MANNOSE COMPLEX
Descriptor:Cytosolic beta-glucosidase, GLYCEROL, CHLORIDE ION, ...
Authors:Noguchi, J., Hayashi, Y., Okino, N., Ito, M., Kimura, M., Kakuta, Y.
Deposit date:2011-11-17
Release date:2012-11-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for inhibition mechanism of human cytosolic beta-glucosidase by monnoside
To be Published