Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1L0L
DownloadVisualize
BU of 1l0l by Molmil
structure of bovine mitochondrial cytochrome bc1 complex with a bound fungicide famoxadone
Descriptor: Cytochrome B, Cytochrome c1, heme protein, ...
Authors:Gao, X, Wen, X, Yu, C.A, Esser, L, Tsao, S, Quinn, B, Zhang, L, Yu, L, Xia, D.
Deposit date:2002-02-11
Release date:2003-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Crystal Structure of Mitochondrial Cytochrome bc1 in Complex with Famoxadone: The Role of Aromatic-Aromatic Interaction in Inhibition
Biochemistry, 41, 2003
1L0N
DownloadVisualize
BU of 1l0n by Molmil
native structure of bovine mitochondrial cytochrome bc1 complex
Descriptor: Cytochrome B, Cytochrome c1, heme protein, ...
Authors:Gao, X, Wen, X, Yu, C.A, Esser, L, Tsao, S, Quinn, B, Zhang, L, Yu, L, Xia, D.
Deposit date:2002-02-11
Release date:2003-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Crystal Structure of Mitochondrial Cytochrome bc1 in Complex with Famoxadone: The Role of Aromatic-Aromatic Interaction in Inhibition
Biochemistry, 41, 2003
1KVH
DownloadVisualize
BU of 1kvh by Molmil
NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore
Descriptor: 5'-D(*CP*CP*CP*GP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*AP*TP*TP*CP*GP*GP*G)-3', SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]]
Authors:Gao, X, Stassinopoulos, A, Ji, J, Kwon, Y, Bare, S, Goldberg, I.H.
Deposit date:2002-01-26
Release date:2002-06-19
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Induced formation of a DNA bulge structure by a molecular wedge ligand-postactivated neocarzinostatin chromophore.
Biochemistry, 41, 2002
1NU1
DownloadVisualize
BU of 1nu1 by Molmil
Crystal Structure of Mitochondrial Cytochrome bc1 Complexed with 2-nonyl-4-hydroxyquinoline N-oxide (NQNO)
Descriptor: 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE, Cytochrome b, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Gao, X, Wen, X, Esser, L, Quinn, B, Yu, L, Yu, C.-A, Xia, D.
Deposit date:2003-01-30
Release date:2003-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for the quinone reduction in the bc(1) complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc(1) with bound substrate and inhibitors at the Q(i) site
Biochemistry, 42, 2003
1NTZ
DownloadVisualize
BU of 1ntz by Molmil
Crystal Structure of Mitochondrial Cytochrome bc1 Complex Bound with Ubiquinone
Descriptor: Cytochrome b, FE2/S2 (INORGANIC) CLUSTER, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gao, X, Wen, X, Esser, L, Quinn, B, Yu, L, Yu, C.-A, Xia, D.
Deposit date:2003-01-30
Release date:2003-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the quinone reduction in the bc(1) complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc(1) with bound substrate and inhibitors at the Q(i) site
Biochemistry, 42, 2003
1NTK
DownloadVisualize
BU of 1ntk by Molmil
Crystal Structure of Mitochondrial Cytochrome bc1 in Complex with Antimycin A1
Descriptor: Cytochrome b, FE2/S2 (INORGANIC) CLUSTER, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gao, X, Wen, X, Esser, L, Quinn, B, Yu, L, Yu, C.-A, Xia, D.
Deposit date:2003-01-30
Release date:2003-10-07
Last modified:2016-03-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the quinone reduction in the bc(1) complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc(1) with bound substrate and inhibitors at the Q(i) site
Biochemistry, 42, 2003
1NTM
DownloadVisualize
BU of 1ntm by Molmil
Crystal Structure of Mitochondrial Cytochrome bc1 Complex at 2.4 Angstrom
Descriptor: Cytochrome b, FE2/S2 (INORGANIC) CLUSTER, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gao, X, Wen, X, Esser, L, Quinn, B, Yu, L, Yu, C, Xia, D.
Deposit date:2003-01-30
Release date:2003-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the quinone reduction in the bc(1) complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc(1) with bound substrate and inhibitors at the Q(i) site
Biochemistry, 42, 2003
3L1L
DownloadVisualize
BU of 3l1l by Molmil
Structure of Arg-bound Escherichia coli AdiC
Descriptor: ARGININE, Arginine/agmatine antiporter, nonyl beta-D-glucopyranoside
Authors:Gao, X, Zhou, L, Shi, Y.
Deposit date:2009-12-13
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:Mechanism of substrate recognition and transport by an amino acid antiporter
Nature, 463, 2010
3LRB
DownloadVisualize
BU of 3lrb by Molmil
Structure of E. coli AdiC
Descriptor: Arginine/agmatine antiporter
Authors:Gao, X, Lu, F, Zhou, L, Shi, Y.
Deposit date:2010-02-10
Release date:2010-02-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.61 Å)
Cite:Structure and mechanism of an amino acid antiporter
Science, 324, 2009
3LRC
DownloadVisualize
BU of 3lrc by Molmil
Structure of E. coli AdiC (P1)
Descriptor: Arginine/agmatine antiporter
Authors:Gao, X, Lu, F, Zhou, L, Shi, Y.
Deposit date:2010-02-11
Release date:2010-02-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4.004 Å)
Cite:Structure and mechanism of an amino acid antiporter
Science, 324, 2009
7RU0
DownloadVisualize
BU of 7ru0 by Molmil
SthK R120A Open State 1
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C, Schmidpeter, P.
Deposit date:2021-08-16
Release date:2022-11-23
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
7RYS
DownloadVisualize
BU of 7rys by Molmil
SthK R120A Open State 2
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C, Schmidpeter, P.
Deposit date:2021-08-26
Release date:2022-11-23
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
7RTJ
DownloadVisualize
BU of 7rtj by Molmil
SthK Y26F Activated State
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C.
Deposit date:2021-08-13
Release date:2022-11-23
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
7RYR
DownloadVisualize
BU of 7ryr by Molmil
SthK R120A Open State 3
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C, Schmidpeter, P.
Deposit date:2021-08-26
Release date:2022-11-23
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
7RTF
DownloadVisualize
BU of 7rtf by Molmil
SthK R120A Closed State
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C.
Deposit date:2021-08-13
Release date:2022-11-23
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
7RSH
DownloadVisualize
BU of 7rsh by Molmil
SthK Y26F Closed State
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C.
Deposit date:2021-08-11
Release date:2022-11-23
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
7CMD
DownloadVisualize
BU of 7cmd by Molmil
Crystal structure of the SARS-CoV-2 PLpro with GRL0617
Descriptor: 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide, Non-structural protein 3, ZINC ION
Authors:Gao, X, Cui, S.
Deposit date:2020-07-27
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structure of SARS-CoV-2 papain-like protease.
Acta Pharm Sin B, 11, 2021
7CJD
DownloadVisualize
BU of 7cjd by Molmil
Crystal structure of the SARS-CoV-2 PLpro C111S mutant
Descriptor: 1,2-ETHANEDIOL, Non-structural protein 3, ZINC ION
Authors:Gao, X, Cui, S.
Deposit date:2020-07-10
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Crystal structure of SARS-CoV-2 papain-like protease.
Acta Pharm Sin B, 11, 2021
3NQX
DownloadVisualize
BU of 3nqx by Molmil
Crystal structure of vibriolysin MCP-02 mature enzyme, a zinc metalloprotease from M4 family
Descriptor: CALCIUM ION, Secreted metalloprotease Mcp02, ZINC ION
Authors:Gao, X, Wang, J, Wu, J.-W, Zhang, Y.-Z.
Deposit date:2010-06-30
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for the autoprocessing of zinc metalloproteases in the thermolysin family
Proc.Natl.Acad.Sci.USA, 107, 2010
3NPH
DownloadVisualize
BU of 3nph by Molmil
Crystal structure of the pfam00427 domain from Synechocystis sp. PCC 6803
Descriptor: Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2
Authors:Gao, X, Chen, L, Wu, J.-W, Zhang, Y.-Z.
Deposit date:2010-06-28
Release date:2011-06-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Crystal structure of the N-terminal domain of linker L(R) and the assembly of cyanobacterial phycobilisome rods
Mol.Microbiol., 82, 2011
3NQZ
DownloadVisualize
BU of 3nqz by Molmil
Crystal structure of the autoprocessed Vibriolysin MCP-02 with E369A mutation
Descriptor: CALCIUM ION, Secreted metalloprotease Mcp02, ZINC ION
Authors:Gao, X, Wang, J, Chen, L, Wu, J.-W, Zhang, Y.-Z.
Deposit date:2010-06-30
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for the autoprocessing of zinc metalloproteases in the thermolysin family
Proc.Natl.Acad.Sci.USA, 107, 2010
3NQY
DownloadVisualize
BU of 3nqy by Molmil
Crystal structure of the autoprocessed complex of Vibriolysin MCP-02 with a single point mutation E346A
Descriptor: CALCIUM ION, Secreted metalloprotease Mcp02, ZINC ION
Authors:Gao, X, Wang, J, Wu, J.-W, Zhang, Y.-Z.
Deposit date:2010-06-30
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the autoprocessing of zinc metalloproteases in the thermolysin family
Proc.Natl.Acad.Sci.USA, 107, 2010
8IT0
DownloadVisualize
BU of 8it0 by Molmil
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-2)
Descriptor: DNA (45-mer), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3'), ...
Authors:Gao, X, Shang, K, Zhu, K, Wang, L, Mu, Z, Fu, X, Yu, X, Qin, B, Zhu, H, Ding, W, Cui, S.
Deposit date:2023-03-21
Release date:2023-10-18
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Nucleic-acid-triggered NADase activation of a short prokaryotic Argonaute.
Nature, 625, 2024
8ISY
DownloadVisualize
BU of 8isy by Molmil
Cryo-EM structure of free-state Crt-SPARTA
Descriptor: Piwi domain-containing protein, TIR domain-containing protein
Authors:Gao, X, Shang, K, Zhu, K, Wang, L, Mu, Z, Fu, X, Yu, X, Qin, B, Zhu, H, Ding, W, Cui, S.
Deposit date:2023-03-21
Release date:2023-10-18
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Nucleic-acid-triggered NADase activation of a short prokaryotic Argonaute.
Nature, 625, 2024
8ISZ
DownloadVisualize
BU of 8isz by Molmil
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA monomer
Descriptor: DNA (45-mer), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3'), ...
Authors:Gao, X, Shang, K, Zhu, K, Wang, L, Mu, Z, Fu, X, Yu, X, Qin, B, Zhu, H, Ding, W, Cui, S.
Deposit date:2023-03-21
Release date:2023-10-18
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Nucleic-acid-triggered NADase activation of a short prokaryotic Argonaute.
Nature, 625, 2024

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon