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1AT9
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BU of 1at9 by Molmil
STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY
Descriptor: BACTERIORHODOPSIN, RETINAL
Authors:Kimura, Y, Vassylyev, D.G, Miyazawa, A, Kidera, A, Matsushima, M, Mitsuoka, K, Murata, K, Hirai, T, Fujiyoshi, Y.
Deposit date:1997-08-20
Release date:1998-09-16
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:Surface of bacteriorhodopsin revealed by high-resolution electron crystallography.
Nature, 389, 1997
4UX1
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BU of 4ux1 by Molmil
Cryo-EM structure of antagonist-bound E2P gastric H,K-ATPase (SCH.E2. AlF)
Descriptor: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K, Tani, K, Fujiyoshi, Y.
Deposit date:2014-08-18
Release date:2014-09-17
Last modified:2014-11-12
Method:ELECTRON CRYSTALLOGRAPHY (8 Å)
Cite:Systematic Comparison of Molecular Conformations of H+,K+-ATPase Reveals an Important Contribution of the A-M2 Linker for the Luminal Gating.
J.Biol.Chem., 289, 2014
1OED
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BU of 1oed by Molmil
STRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES
Descriptor: Acetylcholine receptor beta subunit, Acetylcholine receptor delta subunit, Acetylcholine receptor gamma subunit, ...
Authors:Miyazawa, A, Fujiyoshi, Y, Unwin, N.
Deposit date:2003-03-24
Release date:2003-06-26
Last modified:2019-09-11
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure and gating mechanism of the acetylcholine receptor pore.
Nature, 423, 2003
2ZZ9
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BU of 2zz9 by Molmil
Structure of aquaporin-4 S180D mutant at 2.8 A resolution by electron crystallography
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aquaporin-4
Authors:Tani, K, Mitsuma, T, Hiroaki, Y, Kamegawa, A, Nishikawa, K, Tanimura, Y, Fujiyoshi, Y.
Deposit date:2009-02-06
Release date:2009-06-09
Last modified:2023-11-08
Method:ELECTRON CRYSTALLOGRAPHY (2.8 Å)
Cite:Mechanism of Aquaporin-4's Fast and Highly Selective Water Conduction and Proton Exclusion.
J.Mol.Biol., 389, 2009
8GCL
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BU of 8gcl by Molmil
Cryo-EM structure of hAQP2 in DDM
Descriptor: Aquaporin-2
Authors:Kamegawa, A, Suzuki, S, Nishikawa, K, Numoto, N, Suzuki, H, Fujiyoshi, Y.
Deposit date:2023-03-02
Release date:2023-06-21
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural analysis of the water channel AQP2 by single-particle cryo-EM.
J.Struct.Biol., 215, 2023
4P79
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BU of 4p79 by Molmil
Crystal structure of mouse claudin-15
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Claudin-15
Authors:Suzuki, H, Nishizawa, T, Tani, K, Yamazaki, Y, Tamura, A, Ishitani, R, Dohmae, N, Tsukita, S, Nureki, O, Fujiyoshi, Y.
Deposit date:2014-03-26
Release date:2014-04-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a claudin provides insight into the architecture of tight junctions.
Science, 344, 2014
4UX2
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BU of 4ux2 by Molmil
Cryo-EM structure of antagonist-bound E2P gastric H,K-ATPase (SCH.E2. MgF)
Descriptor: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K, Tani, K, Fujiyoshi, Y.
Deposit date:2014-08-18
Release date:2014-09-17
Last modified:2014-11-12
Method:ELECTRON CRYSTALLOGRAPHY (7 Å)
Cite:Systematic Comparison of Molecular Conformations of H+,K+-ATPase Reveals an Important Contribution of the A-M2 Linker for the Luminal Gating.
J.Biol.Chem., 289, 2014
1FQY
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BU of 1fqy by Molmil
STRUCTURE OF AQUAPORIN-1 AT 3.8 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY
Descriptor: AQUAPORIN-1
Authors:Murata, K, Mitsuoka, K, Hirai, T, Walz, T, Agre, P, Heymann, J.B, Engel, A, Fujiyoshi, Y.
Deposit date:2000-09-07
Release date:2000-10-18
Last modified:2024-02-07
Method:ELECTRON CRYSTALLOGRAPHY (3.8 Å)
Cite:Structural determinants of water permeation through aquaporin-1.
Nature, 407, 2000
4BGN
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BU of 4bgn by Molmil
cryo-EM structure of the NavCt voltage-gated sodium channel
Descriptor: VOLTAGE-GATED SODIUM CHANNEL
Authors:Tsai, C.J, Tani, K, Irie, K, Hiroaki, Y, Shimomura, T, Mcmillan, D.G, Cook, G.M, Schertler, G, Fujiyoshi, Y, Li, X.D.
Deposit date:2013-03-28
Release date:2013-07-10
Last modified:2023-12-20
Method:ELECTRON CRYSTALLOGRAPHY (9 Å)
Cite:Two Alternative Conformations of a Voltage-Gated Sodium Channel.
J.Mol.Biol., 425, 2013
1L9H
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BU of 1l9h by Molmil
Crystal structure of bovine rhodopsin at 2.6 angstroms RESOLUTION
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ...
Authors:Okada, T, Fujiyoshi, Y, Silow, M, Navarro, J, Landau, E.M, Shichida, Y.
Deposit date:2002-03-23
Release date:2002-05-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.
Proc.Natl.Acad.Sci.USA, 99, 2002
1I2H
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BU of 1i2h by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PSD-ZIP45(HOMER1C/VESL-1L)CONSERVED HOMER 1 DOMAIN
Descriptor: PSD-ZIP45(HOMER-1C/VESL-1L)
Authors:Irie, K, Nakatsu, T, Mitsuoka, K, Fujiyoshi, Y, Kato, H.
Deposit date:2001-02-09
Release date:2002-05-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Homer 1 Family Conserved Region Reveals the Interaction Between the EVH1 Domain and Own Proline-rich Motif
J.Mol.Biol., 318, 2002
3IYZ
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BU of 3iyz by Molmil
Structure of Aquaporin-4 S180D mutant at 10.0 A resolution from electron micrograph
Descriptor: Aquaporin-4
Authors:Mitsuma, T, Tani, K, Hiroaki, Y, Kamegawa, A, Suzuki, H, Hibino, H, Kurachi, Y, Fujiyoshi, Y.
Deposit date:2010-07-24
Release date:2010-08-25
Last modified:2023-09-06
Method:ELECTRON CRYSTALLOGRAPHY (10 Å)
Cite:Influence of the cytoplasmic domains of aquaporin-4 on water conduction and array formation.
J.Mol.Biol., 402, 2010
3X29
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BU of 3x29 by Molmil
CRYSTAL STRUCTURE of MOUSE CLAUDIN-19 IN COMPLEX with C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN
Descriptor: Claudin-19, Heat-labile enterotoxin B chain
Authors:Saitoh, Y, Suzuki, H, Tani, K, Nishikawa, K, Irie, K, Ogura, Y, Tamura, A, Tsukita, S, Fujiyoshi, Y.
Deposit date:2014-12-13
Release date:2015-01-21
Last modified:2015-02-25
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural insight into tight junction disassembly by Clostridium perfringens enterotoxin
Science, 347, 2015
2AT9
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BU of 2at9 by Molmil
STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY
Descriptor: 3-[[3-METHYLPHOSPHONO-GLYCEROLYL]PHOSPHONYL]-[1,2-DI[2,6,10,14-TETRAMETHYL-HEXADECAN-16-YL]GLYCEROL, BACTERIORHODOPSIN, RETINAL
Authors:Mitsuoka, K, Hirai, T, Murata, K, Miyazawa, A, Kidera, A, Kimura, Y, Fujiyoshi, Y.
Deposit date:1998-12-17
Release date:1999-04-27
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution.
J.Mol.Biol., 286, 1999
3IZ1
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BU of 3iz1 by Molmil
C-alpha model fitted into the EM structure of Cx26M34A
Descriptor: Gap junction beta-2 protein
Authors:Oshima, A, Tani, K, Toloue, M.M, Hiroaki, Y, Smock, A, Inukai, S, Cone, A, Nicholson, B.J, Sosinsky, G.E, Fujiyoshi, Y.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2024-02-21
Method:ELECTRON CRYSTALLOGRAPHY (6 Å)
Cite:Asymmetric configurations and N-terminal rearrangements in connexin26 gap junction channels.
J.Mol.Biol., 405, 2011
3IZ2
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BU of 3iz2 by Molmil
C-alpha model fitted into the EM structure of Cx26M34Adel2-7
Descriptor: Gap junction beta-2 protein
Authors:Oshima, A, Tani, K, Toloue, M.M, Hiroaki, Y, Smock, A, Inukai, S, Cone, A, Nicholson, B.J, Sosinsky, G.E, Fujiyoshi, Y.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2024-02-21
Method:ELECTRON CRYSTALLOGRAPHY (10 Å)
Cite:Asymmetric configurations and N-terminal rearrangements in connexin26 gap junction channels.
J.Mol.Biol., 405, 2011
4AQ5
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BU of 4aq5 by Molmil
Gating movement in acetylcholine receptor analysed by time-resolved electron cryo-microscopy (closed class)
Descriptor: ACETYLCHOLINE RECEPTOR BETA SUBUNIT, ACETYLCHOLINE RECEPTOR DELTA SUBUNIT, ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT, ...
Authors:Unwin, N, Fujiyoshi, Y.
Deposit date:2012-04-12
Release date:2012-08-01
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Gating Movement of Acetylcholine Receptor Caught by Plunge-Freezing.
J.Mol.Biol., 422, 2012
4AQ9
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BU of 4aq9 by Molmil
Gating movement in acetylcholine receptor analysed by time- resolved electron cryo-microscopy (open class)
Descriptor: ACETYLCHOLINE RECEPTOR BETA SUBUNIT, ACETYLCHOLINE RECEPTOR DELTA SUBUNIT, ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT, ...
Authors:Unwin, N, Fujiyoshi, Y.
Deposit date:2012-04-13
Release date:2012-08-01
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Gating Movement of Acetylcholine Receptor Caught by Plunge-Freezing.
J.Mol.Biol., 422, 2012
7WSV
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BU of 7wsv by Molmil
Cryo-EM structure of the N-terminal deletion mutant of human pannexin-1 in a nanodisc
Descriptor: Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2022-02-01
Release date:2022-02-16
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
2B6P
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BU of 2b6p by Molmil
X-ray structure of lens Aquaporin-0 (AQP0) (lens MIP) in an open pore state
Descriptor: Lens fiber major intrinsic protein
Authors:Gonen, T, Cheng, Y, Sliz, P, Hiroaki, Y, Fujiyoshi, Y, Harrison, S.C, Walz, T.
Deposit date:2005-10-03
Release date:2005-12-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.
Nature, 438, 2005
2B6O
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BU of 2b6o by Molmil
Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) at 1.9A resolution, in a closed pore state
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Lens fiber major intrinsic protein
Authors:Gonen, T, Cheng, Y, Sliz, P, Hiroaki, Y, Fujiyoshi, Y, Harrison, S.C, Walz, T.
Deposit date:2005-10-03
Release date:2005-12-06
Last modified:2023-08-23
Method:ELECTRON CRYSTALLOGRAPHY (1.9 Å)
Cite:Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.
Nature, 438, 2005
2XZB
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BU of 2xzb by Molmil
Pig Gastric H,K-ATPase with bound BeF and SCH28080
Descriptor: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K, Tani, K, Fujiyoshi, Y.
Deposit date:2010-11-24
Release date:2011-01-26
Last modified:2020-09-16
Method:ELECTRON CRYSTALLOGRAPHY (7 Å)
Cite:Conformational Rearrangement of Gastric H(+),K(+)- ATPase Induced by an Acid Suppressant.
Nat.Commun., 2, 2011
2YN9
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BU of 2yn9 by Molmil
Cryo-EM structure of gastric H+,K+-ATPase with bound rubidium
Descriptor: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K, Tani, K, Friedrich, T, Fujiyoshi, Y.
Deposit date:2012-10-13
Release date:2012-11-07
Last modified:2014-07-16
Method:ELECTRON CRYSTALLOGRAPHY (8 Å)
Cite:Cryo-Em Structure of Gastric H+,K+-ATPase with a Single Occupied Cation-Binding Site.
Proc.Natl.Acad.Sci.USA, 109, 2012
2ZW3
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BU of 2zw3 by Molmil
Structure of the connexin-26 gap junction channel at 3.5 angstrom resolution
Descriptor: Gap junction beta-2 protein
Authors:Maeda, S, Nakagawa, S, Suga, M, Yamashita, E, Oshima, A, Fujiyoshi, Y, Tsukihara, T.
Deposit date:2008-12-01
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of the connexin 26 gap junction channel at 3.5 A resolution
Nature, 458, 2009
3VOU
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BU of 3vou by Molmil
The crystal structure of NaK-NavSulP chimera channel
Descriptor: COBALT (II) ION, Ion transport 2 domain protein, Voltage-gated sodium channel, ...
Authors:Irie, K, Shimomura, T, Fujiyoshi, Y.
Deposit date:2012-02-10
Release date:2012-05-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The C-terminal helical bundle of the tetrameric prokaryotic sodium channel accelerates the inactivation rate
Nat Commun, 3, 2012

 

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