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1SKT
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BU of 1skt by Molmil
SOLUTION STRUCTURE OF APO N-DOMAIN OF TROPONIN C, NMR, 40 STRUCTURES
Descriptor: TROPONIN-C
Authors:Tsuda, S, Miura, A, Gagne, S.M, Spyracopoulos, L, Sykes, B.D.
Deposit date:1998-04-06
Release date:1998-12-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in the Apo regulatory domain of skeletal muscle troponin C.
Biochemistry, 38, 1999
1ZAC
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BU of 1zac by Molmil
N-DOMAIN OF TROPONIN C FROM CHICKEN SKELETAL MUSCLE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: TROPONIN-C
Authors:Tsuda, S, Miura, A, Gagne, S.M, Spyracopoulos, L, Sykes, B.D.
Deposit date:1998-04-07
Release date:1998-11-11
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in the Apo regulatory domain of skeletal muscle troponin C.
Biochemistry, 38, 1999
1C8A
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BU of 1c8a by Molmil
NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
Descriptor: PROTEIN (ANTIFREEZE PROTEIN TYPE III)
Authors:Miura, K, Tsuda, S.
Deposit date:2000-05-04
Release date:2001-02-28
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
1C89
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BU of 1c89 by Molmil
NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
Descriptor: ANTIFREEZE PROTEIN TYPE III
Authors:Miura, K, Tsuda, S.
Deposit date:2000-05-04
Release date:2001-02-28
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
1DQC
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BU of 1dqc by Molmil
SOLUTION STRUCTURE OF TACHYCITIN, AN ANTIMICROBIAL PROTEIN WITH CHITIN-BINDING FUNCTION
Descriptor: TACHYCITIN
Authors:Suetake, T, Tsuda, S, Kawabata, S, Miura, K, Kawano, K.
Deposit date:2000-01-04
Release date:2000-09-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Chitin-binding proteins in invertebrates and plants comprise a common chitin-binding structural motif.
J.Biol.Chem., 275, 2000
1ISP
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BU of 1isp by Molmil
Crystal structure of Bacillus subtilis lipase at 1.3A resolution
Descriptor: GLYCEROL, lipase
Authors:Kawasaki, K, Kondo, H, Suzuki, M, Ohgiya, S, Tsuda, S.
Deposit date:2001-12-19
Release date:2002-12-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1SQJ
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BU of 1sqj by Molmil
Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH)
Descriptor: oligoxyloglucan reducing-end-specific cellobiohydrolase
Authors:Yaoi, K, Kondo, H, Noro, N, Suzuki, M, Tsuda, S, Mitsuishi, Y.
Deposit date:2004-03-19
Release date:2004-07-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase
Structure, 12, 2004
7BWY
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BU of 7bwy by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
7BWX
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BU of 7bwx by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a, SULFATE ION
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
6JK5
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BU of 6jk5 by Molmil
Ca2+-dependent type II antifreeze protein (Ca2+-free form)
Descriptor: SULFATE ION, Type II antifreeze protein
Authors:Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y.
Deposit date:2019-02-27
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
6JK4
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BU of 6jk4 by Molmil
Ca2+-dependent type II antifreeze protein
Descriptor: CALCIUM ION, Type II antifreeze protein
Authors:Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y.
Deposit date:2019-02-27
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
1I56
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BU of 1i56 by Molmil
SOLUTION STRUCTURE OF CA2+-BOUND STATE OF CANINE MILK LYSOZYME
Descriptor: LYSOZYME C
Authors:Kobashigawa, Y, Tsuda, S, Nitta, K.
Deposit date:2001-02-25
Release date:2002-02-27
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of Ca2+-bound state of canine milk lysozyme
To be Published
1IY3
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BU of 1iy3 by Molmil
Solution Structure of the Human lysozyme at 4 degree C
Descriptor: Lysozyme
Authors:Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IY4
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BU of 1iy4 by Molmil
Solution structure of the human lysozyme at 35 degree C
Descriptor: Lysozyme
Authors:Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
5B5H
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BU of 5b5h by Molmil
Hydrophobic ice-binding site confer hyperactivity on antifreeze protein from a snow mold fungus
Descriptor: Antifreeze protein, SODIUM ION, SULFATE ION
Authors:Cheng, J, Hanada, Y, Miura, A, Tsuda, S, Kondo, H.
Deposit date:2016-05-06
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1 Å)
Cite:Hydrophobic ice-binding sites confer hyperactivity of an antifreeze protein from a snow mold fungus.
Biochem.J., 473, 2016
5XQN
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BU of 5xqn by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), C2221 form.
Descriptor: Ice-structuring protein, SULFATE ION
Authors:Adachi, M, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
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BU of 5xqr by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20V mutant (NFE6, AFP), C2221 form
Descriptor: ACETATE ION, Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
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BU of 5xqp by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form
Descriptor: Ice-structuring protein, SULFATE ION
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
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BU of 5xqu by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20I mutant (NFE6, AFP), P212121 form
Descriptor: Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQV
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BU of 5xqv by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20L mutant (NFE6, AFP), P21 form
Descriptor: Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
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BU of 5xr0 by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20T mutant (NFE6, AFP), P21 form
Descriptor: Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3VN3
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BU of 3vn3 by Molmil
Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix
Descriptor: 1,2-ETHANEDIOL, Antifreeze protein
Authors:Kondo, H, Xiao, N, Hanada, Y, Sugimoto, H, Hoshino, T, Garnham, C.P, Davies, P.L, Tsuda, S.
Deposit date:2011-12-21
Release date:2012-06-06
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
3WP9
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BU of 3wp9 by Molmil
Crystal structure of antifreeze protein from an Antarctic sea ice bacterium Colwellia sp.
Descriptor: Ice-binding protein
Authors:Hanada, Y, Nishimiya, Y, Miura, A, Tsuda, S, Kondo, H.
Deposit date:2014-01-10
Release date:2014-07-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Hyperactive antifreeze protein from an Antarctic sea ice bacterium Colwellia sp. has a compound ice-binding site without repetitive sequences.
Febs J., 281, 2014
7DC5
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BU of 7dc5 by Molmil
Crystal structure of fungal antifreeze protein with intermediate activity
Descriptor: Antifreeze protein, SULFATE ION
Authors:Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H.
Deposit date:2020-10-23
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
Sci Rep, 11, 2021
7DDB
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BU of 7ddb by Molmil
Crystal structure of fungal antifreeze protein with intermediate activity
Descriptor: Antifreeze protein, MAGNESIUM ION
Authors:Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H.
Deposit date:2020-10-28
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
Sci Rep, 11, 2021

 

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