Author results

2ZNQ
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HUMAN PPAR DELTA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST TIPP401
Descriptor:Peroxisome proliferator-activated receptor delta, HEPTYL-BETA-D-GLUCOPYRANOSIDE, (2S)-2-{3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]-4-methoxybenzyl}butanoic acid
Authors:Oyama, T., Hirakawa, Y., Nagasawa, N., Miyachi, H., Morikawa, K.
Deposit date:2008-04-30
Release date:2009-05-05
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures
Acta Crystallogr.,Sect.D, 65, 2009
1A99
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PUTRESCINE RECEPTOR (POTF) FROM E. COLI
Descriptor:PUTRESCINE-BINDING PROTEIN, 1,4-DIAMINOBUTANE
Authors:Vassylyev, D.G., Tomitori, H., Kashiwagi, K., Morikawa, K., Igarashi, K.
Deposit date:1998-04-17
Release date:1998-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and mutational analysis of the Escherichia coli putrescine receptor. Structural basis for substrate specificity.
J.Biol.Chem., 273, 1998
1ECR
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ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA
Descriptor:DNA (5'-D(*TP*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3, DNA (5'-D(*TP*AP*GP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3, PROTEIN (REPLICATION-TERMINATOR PROTEIN)
Authors:Kamada, K., Morikawa, K.
Deposit date:1996-09-01
Release date:1997-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a replication-terminator protein complexed with DNA.
Nature, 383, 1996
1POT
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SPERMIDINE/PUTRESCINE-BINDING PROTEIN COMPLEXED WITH SPERMIDINE (MONOMER FORM)
Descriptor:SPERMIDINE/PUTRESCINE-BINDING PROTEIN, SPERMIDINE
Authors:Sugiyama, S., Maenaka, K., Matsushima, M., Morikawa, K.
Deposit date:1996-02-02
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.8-A X-ray structure of the Escherichia coli PotD protein complexed with spermidine and the mechanism of polyamine binding.
Protein Sci., 5, 1996
1POY
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SPERMIDINE/PUTRESCINE-BINDING PROTEIN COMPLEXED WITH SPERMIDINE (DIMER FORM)
Descriptor:SPERMIDINE/PUTRESCINE-BINDING PROTEIN, SPERMIDINE
Authors:Sugiyama, S., Vassylyev, D.G., Matsushima, M., Morikawa, K.
Deposit date:1996-02-02
Release date:1996-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of PotD, the primary receptor of the polyamine transport system in Escherichia coli.
J.Biol.Chem., 271, 1996
1RIL
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CRYSTAL STRUCTURE OF RIBONUCLEASE H FROM THERMUS THERMOPHILUS HB8 REFINED AT 2.8 ANGSTROMS RESOLUTION
Descriptor:RIBONUCLEASE H
Authors:Ishikawa, K., Okumura, M., Katayanagi, K., Kimura, S., Kanaya, S., Nakamura, H., Morikawa, K.
Deposit date:1993-01-14
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of ribonuclease H from Thermus thermophilus HB8 refined at 2.8 A resolution.
J.Mol.Biol., 230, 1993
1ISF
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CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, GLYCEROL
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISG
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CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 WITH ATPGAMMAS
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISH
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CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH ETHENONADP
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, ETHENO-NADP
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISI
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CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH ETHENONAD
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, NICOTINAMIDE, ...
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISJ
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CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH NMN
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISM
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CRYSTAL STRUCTURE ANALYSIS OF BST-1/CD157 COMPLEXED WITH NICOTINAMIDE
Descriptor:bone marrow stromal cell antigen 1, N-ACETYL-D-GLUCOSAMINE, NICOTINAMIDE
Authors:Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
2RN2
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STRUCTURAL DETAILS OF RIBONUCLEASE H FROM ESCHERICHIA COLI AS REFINED TO AN ATOMIC RESOLUTION
Descriptor:RIBONUCLEASE H
Authors:Katayanagi, K., Miyagawa, M., Matsushima, M., Ishikawa, M., Kanaya, S., Nakamura, H., Ikehara, M., Matsuzaki, T., Morikawa, K.
Deposit date:1992-04-15
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolution.
J.Mol.Biol., 223, 1992
1IQP
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CRYSTAL STRUCTURE OF THE CLAMP LOADER SMALL SUBUNIT FROM PYROCOCCUS FURIOSUS
Descriptor:RFCS, ADENOSINE-5'-DIPHOSPHATE
Authors:Oyama, T., Ishino, Y., Cann, I.K.O., Ishino, S., Morikawa, K.
Deposit date:2001-07-24
Release date:2001-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Atomic Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus
Mol.Cell, 8, 2001
1HJR
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ATOMIC STRUCTURE OF THE RUVC RESOLVASE: A HOLLIDAY JUNCTION-SPECIFIC ENDONUCLEASE FROM E. COLI
Descriptor:HOLLIDAY JUNCTION RESOLVASE (RUVC)
Authors:Ariyoshi, M., Vassylyev, D.G., Morikawa, K.
Deposit date:1994-12-02
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomic structure of the RuvC resolvase: a holliday junction-specific endonuclease from E. coli.
Cell(Cambridge,Mass.), 78, 1994
1ISR
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CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE AND GADOLINIUM ION
Descriptor:Metabotropic Glutamate Receptor subtype 1, GLUTAMIC ACID, GADOLINIUM ATOM
Authors:Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.
Deposit date:2001-12-21
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.
Proc.Natl.Acad.Sci.USA, 99, 2002
1ISS
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CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH AN ANTAGONIST
Descriptor:Metabotropic Glutamate Receptor subtype 1, (S)-(ALPHA)-METHYL-4-CARBOXYPHENYLGLYCINE
Authors:Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.
Deposit date:2001-12-21
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.
Proc.Natl.Acad.Sci.USA, 99, 2002
1KVD
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KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor:SMK TOXIN, SULFATE ION
Authors:Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1KVE
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KILLER TOXIN FROM HALOTOLERANT YEAST
Descriptor:SMK TOXIN
Authors:Kashiwagi, T., Kunishima, N., Suzuki, C., Tsuchiya, F., Nikkuni, S., Arata, Y., Morikawa, K.
Deposit date:1996-10-04
Release date:1997-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.
Structure, 5, 1997
1VMO
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CRYSTAL STRUCTURE OF VITELLINE MEMBRANE OUTER LAYER PROTEIN I (VMO-I): A FOLDING MOTIF WITH HOMOLOGOUS GREEK KEY STRUCTURES RELATED BY AN INTERNAL THREE-FOLD SYMMETRY
Descriptor:VITELLINE MEMBRANE OUTER LAYER PROTEIN I
Authors:Shimizu, T., Vassylyev, D.G., Kido, S., Doi, Y., Morikawa, K.
Deposit date:1994-01-06
Release date:1994-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of vitelline membrane outer layer protein I (VMO-I): a folding motif with homologous Greek key structures related by an internal three-fold symmetry.
EMBO J., 13, 1994
1WDK
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM I (NATIVE2)
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, ZINC ION, ...
Authors:Ishikawa, M., Tsuchiya, D., Oyama, T., Tsunaka, Y., Morikawa, K.
Deposit date:2004-05-17
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex
Embo J., 23, 2004
1WDL
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM II (NATIVE4)
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Ishikawa, M., Tsuchiya, D., Oyama, T., Tsunaka, Y., Morikawa, K.
Deposit date:2004-05-17
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex
Embo J., 23, 2004
1WDM
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM I (NATIVE3)
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, ZINC ION, ...
Authors:Ishikawa, M., Tsuchiya, D., Oyama, T., Tsunaka, Y., Morikawa, K.
Deposit date:2004-05-17
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex
Embo J., 23, 2004
2D3T
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM V
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Tsuchiya, D., Shimizu, N., Ishikawa, M., Suzuki, Y., Morikawa, K.
Deposit date:2005-10-01
Release date:2006-02-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Ligand-Induced Domain Rearrangement of Fatty Acid beta-Oxidation Multienzyme Complex
Structure, 14, 2006
2DHR
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WHOLE CYTOSOLIC REGION OF ATP-DEPENDENT METALLOPROTEASE FTSH (G399L)
Descriptor:FtsH, ADENOSINE-5'-DIPHOSPHATE
Authors:Suno, R., Niwa, H., Tsuchiya, D., Zhang, X., Yoshida, M., Morikawa, K.
Deposit date:2006-03-24
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure of the Whole Cytosolic Region of ATP-Dependent Protease FtsH
Mol.Cell, 22, 2006