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6R47
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BU of 6r47 by Molmil
The structure of pistol ribozyme bound to magnesium
Descriptor: MAGNESIUM ION, RNA, RNA (50-MER)
Authors:Lilley, D.M.J, Wilson, T.M, Liu, Y.
Deposit date:2019-03-22
Release date:2019-07-03
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.
J.Am.Chem.Soc., 141, 2019
6GRC
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BU of 6grc by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Sodium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (2.452 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRD
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BU of 6grd by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Cesium
Descriptor: CESIUM ION, DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRB
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BU of 6grb by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Potassium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
8I3Z
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BU of 8i3z by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3'), ...
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2023-01-18
Release date:2023-03-22
Last modified:2023-04-19
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
7V9E
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BU of 7v9e by Molmil
Crystal structure of a methyl transferase ribozyme
Descriptor: BARIUM ION, GUANINE, RNA (68-MER), ...
Authors:Deng, J, Lilley, D.M.J, Huang, L.
Deposit date:2021-08-25
Release date:2022-03-23
Last modified:2022-05-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and mechanism of a methyltransferase ribozyme.
Nat.Chem.Biol., 18, 2022
8ITS
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BU of 8its by Molmil
Crystal structure of DUF-3268 k-junction
Descriptor: MAGNESIUM ION, RNA (46-MER)
Authors:Li, M, Lilley, D.M.J, Huang, L.
Deposit date:2023-03-22
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of DUF-3268 k-junction
To Be Published
7EAG
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BU of 7eag by Molmil
Crystal structure of the RAGATH-18 k-turn
Descriptor: RNA (5'-R(*GP*UP*CP*UP*AP*UP*GP*AP*AP*GP*GP*CP*UP*GP*GP*AP*GP*AP*C)-3')
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2021-03-07
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
7EAF
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BU of 7eaf by Molmil
Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn
Descriptor: BARIUM ION, RNA (94-MER), S-ADENOSYLMETHIONINE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2021-03-07
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
8HB8
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BU of 8hb8 by Molmil
Crystal structure of NAD-II riboswitch (single strand) with NMN
Descriptor: BARIUM ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (55-MER)
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HBA
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BU of 8hba by Molmil
Crystal structure of NAD-II riboswitch (single strand) with NAD
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, RNA (55-MER)
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB1
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BU of 8hb1 by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NMN
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, RNA (30-MER), ...
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-04-19
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB3
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BU of 8hb3 by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NR
Descriptor: Nicotinamide riboside, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
5G4V
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BU of 5g4v by Molmil
Association of four two-k-turn units based on Kt-7 3bG,3nC, forming a square-shaped structure
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2016-05-17
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns.
Nanoscale, 8, 2016
5G4U
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BU of 5g4u by Molmil
Association of three two-k-turn units based on Kt-7 3bU,3nU, forming a triangular-shaped structure
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2016-05-17
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns.
Nanoscale, 8, 2016
5G4T
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BU of 5g4t by Molmil
The structure of a quasi-cyclic six k-turn duplex RNA species
Descriptor: HMKT-7
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2016-05-17
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns.
Nanoscale, 8, 2016
6Q8U
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BU of 6q8u by Molmil
Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein
Descriptor: 50S ribosomal protein L7Ae, RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3'), SODIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-12-16
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
6Q8V
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BU of 6q8v by Molmil
Structure of the standard kink turn HmKt-7 variant A2bm6A.
Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-12-16
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
6QN3
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BU of 6qn3 by Molmil
Structure of the Glutamine II Riboswitch
Descriptor: BROMIDE ION, GLUTAMINE, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-02-08
Release date:2019-06-12
Last modified:2019-08-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and ligand binding of the glutamine-II riboswitch.
Nucleic Acids Res., 47, 2019
4AOB
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BU of 4aob by Molmil
SAM-I riboswitch containing the T. solenopsae Kt-23 in complex with S- adenosyl methionine
Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:Schroeder, K.T, Daldrop, P, McPhee, S.A, Lilley, D.M.J.
Deposit date:2012-03-25
Release date:2012-05-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure and Folding of a Rare, Natural Kink Turn in RNA with an Aa Pair at the 2B2N Position.
RNA, 18, 2012
4B5R
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BU of 4b5r by Molmil
SAM-I riboswitch bearing the H. marismortui K-t-7
Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:Daldrop, P, Lilley, D.M.J.
Deposit date:2012-08-07
Release date:2013-01-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The Plasticity of a Structural Motif in RNA: Structural Polymorphism of a Kink Turn as a Function of its Environment.
RNA, 19, 2013
4BW0
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BU of 4bw0 by Molmil
The molecular recognition of kink turn structure by the L7Ae class of proteins
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7, SULFATE ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-06-29
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA, 19, 2013
4C4W
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BU of 4c4w by Molmil
Structure of a rare, non-standard sequence k-turn bound by L7Ae protein
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, DIHYDROGENPHOSPHATE ION, TSKT-23, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-09-09
Release date:2014-02-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae Protein
Nucleic Acids Res., 42, 2014
4C40
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BU of 4c40 by Molmil
The molecular recognition of kink turn structure by the L7Ae class of proteins
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3'
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2013-08-28
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA, 19, 2013
4CS1
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BU of 4cs1 by Molmil
Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3', MAGNESIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2014-03-03
Release date:2014-11-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Critical Base Pair in K-Turns that Confers Folding Characteristics and Correlates with Biological Function.
Nat.Commun., 5, 2014

 

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