Author results

3AU6
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DNA POLYMERASE X FROM THERMUS THERMOPHILUS HB8 TERNARY COMPLEX WITH PRIMER/TEMPLATE DNA AND DDGTP
Descriptor:DNA polymerase beta family (X family), 5'-D(*CP*AP*GP*TP*AP*TP*(DDG))-3', 5'-D(*CP*GP*GP*CP*CP*AP*TP*AP*CP*TP*G)-3', ...
Authors:Nakane, S., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-01-28
Release date:2012-01-25
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
J.Mol.Biol., 417, 2012
3AUO
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DNA POLYMERASE X FROM THERMUS THERMOPHILUS HB8 TERNARY COMPLEX WITH 1-NT GAPPED DNA AND DDGTP
Descriptor:DNA polymerase beta family (X family), 1-nt gapped DNA, 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Nakane, S., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-02-11
Release date:2012-01-25
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
J.Mol.Biol., 417, 2012
3AYT
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TTHB071 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative uncharacterized protein TTHB071, ZINC ION
Authors:Nakane, S., Wakamatsu, T., Fukui, K., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-05-17
Release date:2011-10-19
Last modified:2014-01-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress
J.Biol.Chem., 286, 2011
3AYV
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TTHB071 PROTEIN FROM THERMUS THERMOPHILUS HB8 SOAKING WITH ZNCL2
Descriptor:Putative uncharacterized protein TTHB071, ZINC ION
Authors:Nakane, S., Wakamatsu, T., Fukui, K., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-05-17
Release date:2011-10-19
Last modified:2014-01-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress
J.Biol.Chem., 286, 2011
3B0X
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K263A MUTANT OF POLX FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH CA-DGTP
Descriptor:DNA polymerase beta family (X family), ZINC ION, CALCIUM ION, ...
Authors:Nakane, S., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-06-17
Release date:2012-05-02
Last modified:2012-06-20
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
J.Mol.Biol., 417, 2012
3B0Y
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K263D MUTANT OF POLX FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH CA-DGTP
Descriptor:DNA polymerase beta family (X family), 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ZINC ION, ...
Authors:Nakane, S., Nakagawa, N., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-06-17
Release date:2012-05-02
Last modified:2012-06-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
J.Mol.Biol., 417, 2012
3CM0
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CRYSTAL STRUCTURE OF ADENYLATE KINASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Adenylate kinase
Authors:Nakagawa, N., Kondo, N., Masui, R., Matsuda, Z., Iwamoto, I., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-03-20
Release date:2008-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of adenylate kinase from Thermus thermophilus HB8
To be Published
3CPQ
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CRYSTAL STRUCTURE OF L30E A RIBOSOMAL PROTEIN FROM METHANOCALDOCOCCUS JANNASCHII DSM2661 (MJ1044)
Descriptor:50S ribosomal protein L30e
Authors:Jeyakanthan, J., Sarani, R., Mridula, P., Sekar, K., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-04-01
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of L30e a ribosomal protein from Methanocaldococcus jannaschii DSM2661 (MJ1044)
To be Published
3CQ1
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STRUCTURE OF THE DTDP-4-KETO-L-RHAMNOSE REDUCTASE RELATED PROTEIN (TT1362) FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative uncharacterized protein TTHB138
Authors:Jeyakanthan, J., Satoh, S., Kitamura, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-04-02
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein (TT1362) from Thermus Thermophilus HB8
To be Published
3CQ2
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STRUCTURE OF THE DTDP-4-KETO-L-RHAMNOSE REDUCTASE RELATED PROTEIN (OTHER FORM) FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative uncharacterized protein TTHB138
Authors:Jeyakanthan, J., Kanaujia, S.P., Sekar, K., Satoh, S., Kitamura, Y., Ebihara, A., Chen, L., Liu, Z.J., Wang, B.C., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-04-02
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein from Thermus Thermophilus HB8
To be Published
3HJE
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CRYSTAL STRUCTURE OF SULFOLOBUS TOKODAII HYPOTHETICAL MALTOOLIGOSYL TREHALOSE SYNTHASE
Descriptor:704aa long hypothetical glycosyltransferase, GLYCEROL
Authors:Cielo, C.B.C., Okazaki, S., Suzuki, A., Mizushima, T., Masui, R., Kuramitsu, S., Yamane, T.
Deposit date:2009-05-21
Release date:2010-04-14
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii
Acta Crystallogr.,Sect.F, 66, 2010
3HJN
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CRYSTAL STRUCTURE OF THYMIDYLATE KINASE IN COMPLEX WITH DTDP AND ADP FROM THERMOTOGA MARITIMA
Descriptor:Thymidylate kinase, ADENOSINE-5'-DIPHOSPHATE, THYMIDINE-5'-DIPHOSPHATE, ...
Authors:Yoshikawa, S., Nakagawa, N., Shirouzu, M., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-05-22
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of thymidylate kinase in complex with dTDP and ADP from Thermotoga maritima
To be Published
3HPD
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STRUCTURE OF HYDROXYETHYLTHIAZOLE KINASE PROTEIN FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Hydroxyethylthiazole kinase, PHOSPHATE ION
Authors:Jeyakanthan, J., Thamotharan, S., Kuramitsu, S., Yokoyama, S., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-06-04
Release date:2009-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of Hydroxyethylthiazole Kinase Protein from Pyrococcus Horikoshii Ot3
To be Published
3I7U
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CRYSTAL STRUCTURE OF AP4A HYDROLASE (AQ_158) FROM AQUIFEX AEOLICUS VF5
Descriptor:AP4A hydrolase, CHLORIDE ION, 1,2-ETHANEDIOL, ...
Authors:Jeyakanthan, J., Kanaujia, S.P., Nakagawa, N., Sekar, K., Kuramitsu, S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-09
Release date:2009-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5
Acta Crystallogr.,Sect.D, 66, 2010
3I7V
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CRYSTAL STRUCTURE OF AP4A HYDROLASE COMPLEXED WITH AP4A (ATP) (AQ_158) FROM AQUIFEX AEOLICUS VF5
Descriptor:AP4A hydrolase, ADENOSINE-5'-TRIPHOSPHATE, BIS(ADENOSINE)-5'-TETRAPHOSPHATE, ...
Authors:Jeyakanthan, J., Kanaujia, S.P., Nakagawa, N., Sekar, K., Kuramitsu, S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-09
Release date:2009-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5
Acta Crystallogr.,Sect.D, 66, 2010
3IWT
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STRUCTURE OF HYPOTHETICAL MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN B FROM SULFOLOBUS TOKODAII
Descriptor:178aa long hypothetical molybdenum cofactor biosynthesis protein B, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Antonyuk, S.V., Ellis, M.J., Strange, R.W., Hasnain, S.S., Bessho, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-09-03
Release date:2009-09-29
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of hypothetical Mo-cofactor biosynthesis protein B (ST2315) from Sulfolobus tokodaii
Acta Crystallogr.,Sect.F, 65, 2009
3IXQ
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STRUCTURE OF RIBOSE 5-PHOSPHATE ISOMERASE A FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:Ribose-5-phosphate isomerase A, CHLORIDE ION, S-1,2-PROPANEDIOL, ...
Authors:Antonyuk, S.V., Ellis, M.J., Strange, R.W., Hasnain, S.S., Bessho, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-09-04
Release date:2009-10-06
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The structure of an archaeal ribose-5-phosphate isomerase from Methanocaldococcus jannaschii (MJ1603).
Acta Crystallogr.,Sect.F, 65, 2009
3JQJ
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CRYSTAL STRUCTURE OF THE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C (TTHA1789) FROM THERMUS THEROMOPHILUS HB8
Descriptor:Molybdenum cofactor biosynthesis protein C, PHOSPHATE ION, R-1,2-PROPANEDIOL, ...
Authors:Kanaujia, S.P., Jeyakanthan, J., Nakagawa, N., Sekar, K., Baba, S., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-09-07
Release date:2010-06-30
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8
Acta Crystallogr.,Sect.D, 66, 2010
3JQK
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CRYSTAL STRUCTURE OF THE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C (TTHA1789) FROM THERMUS THEROMOPHILUS HB8 (H32 FORM)
Descriptor:Molybdenum cofactor biosynthesis protein C, PHOSPHATE ION, ACETATE ION
Authors:Kanaujia, S.P., Jeyakanthan, J., Nakagawa, N., Sekar, K., Baba, S., Chen, L., Liu, Z.-J., Wang, B.-C., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-09-07
Release date:2010-06-30
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8
Acta Crystallogr.,Sect.D, 66, 2010
3JQM
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BINDING OF 5'-GTP TO MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOAC FROM THERMUS THEROMOPHILUS HB8
Descriptor:Molybdenum cofactor biosynthesis protein C, GUANOSINE-5'-TRIPHOSPHATE, CITRATE ANION, ...
Authors:Kanaujia, S.P., Jeyakanthan, J., Nakagawa, N., Sekar, K., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-09-07
Release date:2010-06-30
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8
Acta Crystallogr.,Sect.D, 66, 2010
3KB6
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CRYSTAL STRUCTURE OF D-LACTATE DEHYDROGENASE FROM AQUIFEX AEOLICUS COMPLEXED WITH NAD AND LACTIC ACID
Descriptor:D-lactate dehydrogenase, PROPANOIC ACID, LACTIC ACID, ...
Authors:Antonyuk, S.V., Strange, R.W., Ellis, M.J., Bessho, Y., Kuramitsu, S., Yokoyama, S., Hasnain, S.S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-10-20
Release date:2009-11-10
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structure of D-lactate dehydrogenase from Aquifex aeolicus complexed with NAD(+) and lactic acid (or pyruvate).
Acta Crystallogr.,Sect.F, 65, 2009
3KBB
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CRYSTAL STRUCTURE OF PUTATIVE BETA-PHOSPHOGLUCOMUTASE FROM THERMOTOGA MARITIMA
Descriptor:Phosphorylated carbohydrates phosphatase TM_1254, SULFATE ION, GLYCEROL
Authors:Strange, R.W., Antonyuk, S.V., Ellis, M.J., Bessho, Y., Kuramitsu, S., Yokoyama, S., Hasnain, S.S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-10-20
Release date:2009-11-17
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure of a putative beta-phosphoglucomutase (TM1254) from Thermotoga maritima.
Acta Crystallogr.,Sect.F, 65, 2009
3MCH
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CRYSTAL STRUCTURE OF THE MOLYBDOPTERIN BIOSYNTHESIS ENZYME MOAB (TTHA0341) FROM THERMUS THEROMOPHILUS HB8
Descriptor:Molybdopterin biosynthesis enzyme, MoaB, 1,2-ETHANEDIOL
Authors:Jeyakanthan, J., Kanaujia, S.P., Sekar, K., Baba, S., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-03-29
Release date:2011-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms
Acta Crystallogr.,Sect.F, 67, 2011
3MCI
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CRYSTAL STRUCTURE OF MOLYBDENUM COFACTOR BIOSYNTHESIS (AQ_061) FROM AQUIFEX AEOLICUS VF5
Descriptor:Molybdenum cofactor biosynthesis MOG, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER
Authors:Jeyakanthan, J., Kanaujia, S.P., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-03-29
Release date:2011-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms
Acta Crystallogr.,Sect.F, 67, 2011
3MCJ
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CRYSTAL STRUCTURE OF MOLYBDENUM COFACTOR BIOSYNTHESIS (AQ_061) OTHER FORM FROM AQUIFEX AEOLICUS VF5
Descriptor:Molybdenum cofactor biosynthesis MOG, 1,2-ETHANEDIOL
Authors:Jeyakanthan, J., Kanaujia, S.P., Sekar, K., Agari, Y., Ebihara, A., Kuramitsu, S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-03-29
Release date:2011-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms
Acta Crystallogr.,Sect.F, 67, 2011