Author results

3RBE
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DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE OPPOSITE THE 3-METHYLCYTOSINE (M3C) LESION
Descriptor:DNA polymerase IV, DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'), DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ...
Authors:Rechkoblit, O., Patel, D.J.
Deposit date:2011-03-29
Release date:2011-06-15
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions.
Structure, 19, 2011
3RIC
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CRYSTAL STRUCTURE OF D48V||A47D MUTANT OF HUMAN GLYCOLIPID TRANSFER PROTEIN COMPLEXED WITH 3-O-SULFO-GALACTOSYLCERAMIDE CONTAINING NERVONOYL ACYL CHAIN (24:1)
Descriptor:Glycolipid transfer protein, (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE
Authors:Samygina, V., Ochoa-Lizarralde, B., Patel, D.J., Brown, R.E., Malinina, L.
Deposit date:2011-04-13
Release date:2012-02-08
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3RIU
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CRYSTAL STRUCTURE OF DROSOPHILA HEXAMERIC C3PO FORMED BY TRUNCATED TRANSLIN AND TRAX
Descriptor:Translin, Translin associated factor X, isoform B
Authors:Tian, Y., Simanshu, D.K., Patel, D.J.
Deposit date:2011-04-14
Release date:2011-05-11
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Multimeric assembly and biochemical characterization of the Trax-translin endonuclease complex.
Nat.Struct.Mol.Biol., 18, 2011
3RV0
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CRYSTAL STRUCTURE OF K. POLYSPORUS DCR1 WITHOUT THE C-TERMINAL DSRBD
Descriptor:K. polysporus Dcr1, MAGNESIUM ION
Authors:Nakanishi, K., Weinberg, D.E., Bartel, D.P., Patel, D.J.
Deposit date:2011-05-05
Release date:2011-08-03
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:The inside-out mechanism of dicers from budding yeasts.
Cell(Cambridge,Mass.), 146, 2011
3RV1
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CRYSTAL STRUCTURE OF THE N-TERMINAL AND RNASE III DOMAINS OF K. POLYSPORUS DCR1 E224Q MUTANT
Descriptor:K. polysporus Dcr1
Authors:Nakanishi, K., Weinberg, D.E., Bartel, D.P., Patel, D.J.
Deposit date:2011-05-05
Release date:2011-08-03
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.975 Å)
Cite:The inside-out mechanism of dicers from budding yeasts.
Cell(Cambridge,Mass.), 146, 2011
3RW6
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STRUCTURE OF NUCLEAR RNA EXPORT FACTOR TAP BOUND TO CTE RNA
Descriptor:Nuclear RNA export factor 1, constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA
Authors:Teplova, M., Khin, N.W., Patel, D.J., Izaurralde, E.
Deposit date:2011-05-07
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-function studies of nucleocytoplasmic transport of retroviral genomic RNA by mRNA export factor TAP.
Nat.Struct.Mol.Biol., 18, 2011
3RW7
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STRUCTURE OF N-TERMINAL DOMAIN OF NUCLEAR RNA EXPORT FACTOR TAP
Descriptor:Nuclear RNA export factor 1
Authors:Teplova, M., Khin, N.W., Wohlbold, L., Izaurralde, E., Patel, D.J.
Deposit date:2011-05-07
Release date:2011-08-10
Last modified:2011-11-02
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-function studies of nucleocytoplasmic transport of retroviral genomic RNA by mRNA export factor TAP.
Nat.Struct.Mol.Biol., 18, 2011
3RWV
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CRYSTAL STRUCTURE OF APO-FORM OF HUMAN GLYCOLIPID TRANSFER PROTEIN AT 1.5 A RESOLUTION
Descriptor:Glycolipid transfer protein, SULFATE ION
Authors:Samygina, V., Cabo-Bilbao, A., Popov, A.N., Ochoa-Lizarralde, B., Goni-de-Cerio, F., Patel, D.J., Brown, R.E., Malinina, L.
Deposit date:2011-05-09
Release date:2012-02-08
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3RZN
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CRYSTAL STRUCTURE OF HUMAN GLYCOLIPID TRANSFER PROTEIN COMPLEXED WITH 3-O-SULFO-GALACTOSYLCERAMIDE CONTAINING NERVONOYL ACYL CHAIN (24:1)
Descriptor:Glycolipid transfer protein, (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE
Authors:Samygina, V., Cabo-Bilbao, A., Popov, A.N., Ochoa-Lizarralde, B., Patel, D.J., Brown, R.E., Malinina, L.
Deposit date:2011-05-12
Release date:2012-02-08
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3S0I
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CRYSTAL STRUCTURE OF D48V MUTANT OF HUMAN GLYCOLIPID TRANSFER PROTEIN COMPLEXED WITH 3-O-SULFO GALACTOSYLCERAMIDE CONTAINING NERVONOYL ACYL CHAIN
Descriptor:Glycolipid transfer protein, (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE
Authors:Samygina, V., Popov, A.N., Cabo-Bilbao, A., Ochoa-Lizarralde, B., Patel, D.J., Brown, R.E., Malinina, L.
Deposit date:2011-05-13
Release date:2012-02-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3S0K
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CRYSTAL STRUCTURE OF HUMAN GLYCOLIPID TRANSFER PROTEIN COMPLEXED WITH GLUCOSYLCERAMIDE CONTAINING OLEOYL ACYL CHAIN (18:1)
Descriptor:Glycolipid transfer protein, (9Z)-N-[(2S,3R,4E)-1-(beta-D-glucopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]octadec-9-enamide, NICKEL (II) ION
Authors:Cabo-Bilbao, A., Samygina, V., Popov, A.N., Ochoa-Lizarralde, B., Goni-de-Cerio, F., Patel, D.J., Brown, R.E., Malinina, L.
Deposit date:2011-05-13
Release date:2012-02-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3SKI
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'-DEOXYGUANOSINE
Descriptor:RNA (68-MER), 2'-DEOXY-GUANOSINE, MAGNESIUM ION, ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.
Deposit date:2011-06-22
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SKL
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'-DEOXYGUANOSINE, IRIDIUM HEXAMMINE SOAK
Descriptor:RNA (66-MER), 2'-DEOXY-GUANOSINE, MAGNESIUM ION, ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.
Deposit date:2011-06-22
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SKR
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, COBALT HEXAMMINE SOAK
Descriptor:RNA (66-MER), 2'-DEOXY-GUANOSINE, COBALT HEXAMMINE(III), ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.
Deposit date:2011-06-23
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SKT
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, MANGANESE SOAK
Descriptor:RNA (66-MER), 2'-DEOXY-GUANOSINE, MANGANESE (II) ION, ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.
Deposit date:2011-06-23
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SKW
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, CESIUM SOAK
Descriptor:RNA (66-MER), 2'-DEOXY-GUANOSINE, CESIUM ION, ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.
Deposit date:2011-06-23
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SKZ
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO GUANOSINE
Descriptor:RNA (68-MER), GUANOSINE, MAGNESIUM ION, ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.
Deposit date:2011-06-23
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SLM
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
Descriptor:RNA (68-MER), 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, SULFATE ION, ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.A.
Deposit date:2011-06-24
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SLQ
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CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO GUANOSINE-5'-MONOPHOSPHATE
Descriptor:RNA (68-MER), GUANOSINE-5'-MONOPHOSPHATE, SULFATE ION, ...
Authors:Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A.
Deposit date:2011-06-24
Release date:2011-08-17
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3SOU
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STRUCTURE OF UHRF1 PHD FINGER IN COMPLEX WITH HISTONE H3 1-9 PEPTIDE
Descriptor:E3 ubiquitin-protein ligase UHRF1, Histone H3, ZINC ION
Authors:Rajakumara, E., Patel, D.J.
Deposit date:2011-06-30
Release date:2011-08-03
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8001 Å)
Cite:PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
3SOW
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STRUCTURE OF UHRF1 PHD FINGER IN COMPLEX WITH HISTONE H3K4ME3 1-9 PEPTIDE
Descriptor:E3 ubiquitin-protein ligase UHRF1, Histone H3, ZINC ION
Authors:Rajakumara, E., Patel, D.J.
Deposit date:2011-06-30
Release date:2011-08-03
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.9501 Å)
Cite:PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
3SOX
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STRUCTURE OF UHRF1 PHD FINGER IN THE FREE FORM
Descriptor:E3 ubiquitin-protein ligase UHRF1, ZINC ION
Authors:Rajakumara, E., Patel, D.J.
Deposit date:2011-06-30
Release date:2011-08-03
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.6501 Å)
Cite:PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
3SUH
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CRYSTAL STRUCTURE OF THF RIBOSWITCH, BOUND WITH 5-FORMYL-THF
Descriptor:Riboswitch, SODIUM ION, N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid
Authors:Huang, L., Serganov, A., Patel, D.J.
Deposit date:2011-07-11
Release date:2011-09-14
Last modified:2014-10-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.
Proc.Natl.Acad.Sci.USA, 108, 2011
3SUX
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CRYSTAL STRUCTURE OF THF RIBOSWITCH, BOUND WITH THF
Descriptor:Riboswitch, SODIUM ION, 5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID
Authors:Huang, L., Serganov, A., Patel, D.J.
Deposit date:2011-07-11
Release date:2011-09-14
Last modified:2012-03-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.
Proc.Natl.Acad.Sci.USA, 108, 2011
3SUY
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CRYSTAL STRUCTURE OF THF RIBOSWITCH, UNBOUND STATUS
Descriptor:riboswitch
Authors:Huang, L., Serganov, A., Patel, D.J.
Deposit date:2011-07-11
Release date:2011-09-14
Last modified:2012-03-14
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.
Proc.Natl.Acad.Sci.USA, 108, 2011