Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1S5I
DownloadVisualize
BU of 1s5i by Molmil
Fab (LNKB-2) of monoclonal antibody to Human Interleukin-2, crystal structure
Descriptor: Fab-fragment of monoclonal antibody
Authors:Pletnev, V.Z, Goryacheva, E.A, Tsygannik, I.N, Nesmeyanov, V.A, Pletnev, S.V, Pangborn, W, Duax, W.
Deposit date:2004-01-21
Release date:2004-05-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:[A new crystal form of the Fab fragment of a monoclonal antibody to human interleukin-2: the three-dimensional structure at 2.7 A resolution].
Bioorg. Khim., 30
7BHG
DownloadVisualize
BU of 7bhg by Molmil
Gene-engineered variant of FusionRed with Trp based chromophore - 2.1A
Descriptor: Fluorescent protein FP480
Authors:Pletnev, V.Z, Pletnev, S.V, Pletneva, N.V.
Deposit date:2021-01-11
Release date:2022-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Gene-engineered variant of FusionRed with Trp based chromophore - 2.1A
To Be Published
1ACX
DownloadVisualize
BU of 1acx by Molmil
ACTINOXANTHIN STRUCTURE AT THE ATOMIC LEVEL (RUSSIAN)
Descriptor: ACTINOXANTHIN
Authors:Pletnev, V.Z, Kuzin, A.P.
Deposit date:1982-12-17
Release date:1983-03-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Actinoxanthin Structure at the Atomic Level (Russian)
Bioorg.Khim., 8, 1982
4RTC
DownloadVisualize
BU of 4rtc by Molmil
Crystal structure of the green fluorescent variant, nowGFP, of the cyan Cerulean at pH 9.0
Descriptor: GLYCEROL, nowGFP
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2014-11-14
Release date:2015-09-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore.
Acta Crystallogr.,Sect.D, 71, 2015
4RYS
DownloadVisualize
BU of 4rys by Molmil
Crystal structure of the green fluorescent rotein NowGFP (the variant of cyan Cerulean) at pH 4.8
Descriptor: GLYCEROL, NowGFP
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2014-12-17
Release date:2015-09-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore.
Acta Crystallogr.,Sect.D, 71, 2015
4RYW
DownloadVisualize
BU of 4ryw by Molmil
Crystal structure of the photoconverted green fluorescent protein NowGFP_conv (the variant of cyan Cerulean) at pH 7.0
Descriptor: GLYCEROL, NowGFP_conv
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2014-12-17
Release date:2015-09-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore.
Acta Crystallogr.,Sect.D, 71, 2015
4HVF
DownloadVisualize
BU of 4hvf by Molmil
Crystal structure of green fluorescent protein lanGFP(Branchiostoma Lanceolatum)
Descriptor: GLYCEROL, Green fluorescent protein blFP-Y6
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2012-11-06
Release date:2013-09-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.
Acta Crystallogr.,Sect.D, 69, 2013
4JGE
DownloadVisualize
BU of 4jge by Molmil
Crystal structure of red fluorescent gene-engineered variant with improved folding - lanRFP_delS83 (Branchiostoma lanceolatum)
Descriptor: GLYCEROL, Red fluorescent protein blFP-R5
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2013-03-01
Release date:2013-09-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.
Acta Crystallogr.,Sect.D, 69, 2013
4JEO
DownloadVisualize
BU of 4jeo by Molmil
Crystal structure of red fluorescent protein lanRFPdam exposed to prolonged X-ray irradiation
Descriptor: GLYCEROL, Red fluorescent protein blFP-R5
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2013-02-27
Release date:2013-09-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.
Acta Crystallogr.,Sect.D, 69, 2013
4JF9
DownloadVisualize
BU of 4jf9 by Molmil
Crystal structure of the wild type red fluorescent protein lanRFP (Branchiostoma Lanceolatum)
Descriptor: Red fluorescent protein blFP-R5
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2013-02-28
Release date:2013-09-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.
Acta Crystallogr.,Sect.D, 69, 2013
5DRF
DownloadVisualize
BU of 5drf by Molmil
Green/cyan WasCFP-pH5.5 at pH 5.5
Descriptor: GLYCEROL, SODIUM ION, WasCFP-pH5.5 at pH 5.5
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2015-09-15
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Crystal structure of pH and T dependent green fluorescent protein WasCFP with Trp based chromophore
Russ.J.Bioorganic Chem., 42 (6), 2016
5DQM
DownloadVisualize
BU of 5dqm by Molmil
Green/cyan WasCFP at pH 2.0
Descriptor: WasCFP_pH2
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2015-09-14
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of pH and T dependent green fluorescent protein WasCFP with Trp based chromophore
Russ.J.Bioorganic Chem., 42 (6), 2016
5DRG
DownloadVisualize
BU of 5drg by Molmil
Green/cyan WasCFP at pH 10.0
Descriptor: GLYCEROL, Green/cyan WasCFP_pH10 at pH 10.0, SODIUM ION
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2015-09-15
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Crystal structure of pH and T dependent green fluorescent protein WasCFP with Trp based chromophore
Russ.J.Bioorganic Chem., 42 (6), 2016
1EUF
DownloadVisualize
BU of 1euf by Molmil
BOVINE DUODENASE(NEW SERINE PROTEASE), CRYSTAL STRUCTURE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DUODENASE, PHOSPHATE ION
Authors:Pletnev, V.Z, Zamolodchikova, T.S, Pangborn, W.A, Duax, W.L.
Deposit date:2000-04-14
Release date:2001-04-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of bovine duodenase, a serine protease, with dual trypsin and chymotrypsin-like specificities.
Proteins, 41, 2000
6ZQO
DownloadVisualize
BU of 6zqo by Molmil
EYFP mutant - F165G
Descriptor: G protein/GFP fusion protein, SULFATE ION
Authors:Pletnev, V.Z, Pletnev, S.V, Pletneva, N.V.
Deposit date:2020-07-10
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Amino acid residue at the 165th position tunes EYFP chromophore maturation. A structure-based design.
Comput Struct Biotechnol J, 19, 2021
2BQP
DownloadVisualize
BU of 2bqp by Molmil
THE STRUCTURE OF THE PEA LECTIN-D-GLUCOPYRANOSE COMPLEX
Descriptor: CALCIUM ION, MANGANESE (II) ION, PROTEIN (PEA LECTIN), ...
Authors:Ruzeinikov, S.N, Mikhailova Yu, I, Tsygannik, I.N, Pangborn, W, Duax, W, Pletnev, V.Z.
Deposit date:1998-12-08
Release date:1998-12-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Structure of Pea Lectin-D-Glucopyranose Complex at a 1.9 A Resolution
RUSS.J.BIOORGANIC CHEM., 23, 1997
4ZBL
DownloadVisualize
BU of 4zbl by Molmil
Phototoxic fluorescent protein mKillerOrange
Descriptor: CITRIC ACID, GLYCEROL, Photosesitizer mKillerOrange
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2015-04-14
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore.
Plos One, 10, 2015
5EXB
DownloadVisualize
BU of 5exb by Molmil
Wild type green fluorescent protein DendFP (Dendronephthya sp.)
Descriptor: GLYCEROL, Green fluorescent protein
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2015-11-23
Release date:2016-08-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystal structure of the fluorescent protein from Dendronephthya sp. in both green and photoconverted red forms.
Acta Crystallogr D Struct Biol, 72, 2016
5EXC
DownloadVisualize
BU of 5exc by Molmil
Photoconverted red fluorescent protein DendRFP
Descriptor: GLYCEROL, Green fluorescent protein, MAGNESIUM ION
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2015-11-23
Release date:2016-08-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Crystal structure of the fluorescent protein from Dendronephthya sp. in both green and photoconverted red forms.
Acta Crystallogr D Struct Biol, 72, 2016
6UBO
DownloadVisualize
BU of 6ubo by Molmil
Fluorogen Activating Protein Dib1
Descriptor: 12-(diethylamino)-2,2-bis(fluoranyl)-4,5-dimethyl-5-aza-3-azonia-2-boranuidatricyclo[7.4.0.0^{3,7}]trideca-1(13),3,7,9,11-pentaen-6-one, CITRIC ACID, Outer membrane lipoprotein Blc, ...
Authors:Muslinkina, L, Pletneva, N, Pletnev, V.Z, Pletnev, S.
Deposit date:2019-09-12
Release date:2020-09-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structure-Based Rational Design of Two Enhanced Bacterial Lipocalin Blc Tags for Protein-PAINT Super-resolution Microscopy.
Acs Chem.Biol., 15, 2020
6U1A
DownloadVisualize
BU of 6u1a by Molmil
Crystal Structure of Fluorescent Protein FusionRed
Descriptor: CALCIUM ION, NICKEL (II) ION, Red fluorescent protein
Authors:Pletnev, S, Muslinkina, L, Pletneva, N, Pletnev, V.Z.
Deposit date:2019-08-15
Release date:2020-04-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Two independent routes of post-translational chemistry in fluorescent protein FusionRed.
Int.J.Biol.Macromol., 155, 2020
4N3D
DownloadVisualize
BU of 4n3d by Molmil
Crystal structure of the dimeric variant EGFP-K162Q in P61 space group
Descriptor: GLYCEROL, Green fluorescent protein, PHOSPHATE ION, ...
Authors:Pletneva, N.V, Pletnev, V.Z, Pletnev, S.V.
Deposit date:2013-10-07
Release date:2014-08-27
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Three dimensional structure of the dimeric gene-engineered variant of green fluorescent protein egfp-K162Q in P61 crystal space group
Rus.J.Bioorg.Chem., 40, 2014
4ZFS
DownloadVisualize
BU of 4zfs by Molmil
Phototoxic Fluorescent Protein KillerOrange
Descriptor: KillerOrange
Authors:Pletneva, N.V, Pletnev, V.Z, Pletnev, S.
Deposit date:2015-04-21
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore.
Plos One, 10, 2015
2OGR
DownloadVisualize
BU of 2ogr by Molmil
Crystal Structure of Yellow Fluorescent Protein from Zoanthus sp. at 1.8 A Resolution
Descriptor: FLUORESCENT PROTEIN FP538
Authors:Pletneva, N.V, Pletnev, S.V, Tikhonova, T.V, Pletnev, V.Z.
Deposit date:2007-01-08
Release date:2007-09-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom
Bioorg.Khim., 33
3PIB
DownloadVisualize
BU of 3pib by Molmil
Crystal structure of red fluorescent protein eqFP578 crystallized at pH 5.5
Descriptor: GLYCEROL, eqFP578 fluorescent protein
Authors:Pletnev, S, Pletneva, N.V, Pletnev, V.Z.
Deposit date:2010-11-05
Release date:2011-05-25
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (1.154 Å)
Cite:Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
Protein Sci., 20, 2011

 

123>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon