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3IGC
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BU of 3igc by Molmil
Smallpox virus topoisomerase-DNA transition state
Descriptor: 5'-D(*AP*TP*TP*CP*C)-3', 5'-D(*CP*GP*GP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*GP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3', ...
Authors:Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D.
Deposit date:2009-07-27
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Insights from the Structure of a Smallpox Virus Topoisomerase-DNA Transition State Mimic.
Structure, 18, 2010
2H7F
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BU of 2h7f by Molmil
Structure of variola topoisomerase covalently bound to DNA
Descriptor: 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3', DNA topoisomerase 1
Authors:Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D.
Deposit date:2006-06-02
Release date:2006-08-15
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for specificity in the poxvirus topoisomerase.
Mol.Cell, 23, 2006
2H7G
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BU of 2h7g by Molmil
Structure of variola topoisomerase non-covalently bound to DNA
Descriptor: 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*TP*A)-3', DNA topoisomerase 1
Authors:Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D.
Deposit date:2006-06-02
Release date:2006-08-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for specificity in the poxvirus topoisomerase.
Mol.Cell, 23, 2006
1MW8
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BU of 1mw8 by Molmil
Crystal Structure of a Complex between H365R mutant of 67 kDA N-terminal fragment of E. coli DNA Topoisomerase I and 5'-ACTTCGGGATG-3'
Descriptor: 5'-D(*AP*CP*TP*TP*CP*GP*GP*GP*AP*TP*G)-3', DNA Topoisomerase I, SULFATE ION, ...
Authors:Perry, K, Mondragon, A.
Deposit date:2002-09-27
Release date:2003-10-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a Complex between E. coli DNA Topoisomerase I and Single-Stranded DNA.
Structure, 11, 2003
1MW9
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BU of 1mw9 by Molmil
Crystal Structure of H365R mutant of 67 kDA N-terminal fragment of E. coli DNA Topoisomerase I
Descriptor: DNA Topoisomerase I, SULFATE ION
Authors:Perry, K, Mondragon, A.
Deposit date:2002-09-27
Release date:2003-10-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structure of a Complex between E. coli DNA Topoisomerase I and Single-Stranded DNA.
Structure, 11, 2003
5JMC
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BU of 5jmc by Molmil
Receptor binding domain of Botulinum neurotoxin A in complex with rat SV2C
Descriptor: Botulinum neurotoxin type A, Synaptic vesicle glycoprotein 2C
Authors:Yao, G, Zhang, S, Mahrhold, S, Lam, K, Stern, D, Bagramyan, K, Perry, K, Kalkum, M, Rummel, A, Dong, M, Jin, R.
Deposit date:2016-04-28
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A.
Nat.Struct.Mol.Biol., 23, 2016
5JLV
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BU of 5jlv by Molmil
Receptor binding domain of Botulinum neurotoxin A in complex with human glycosylated SV2C
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Yao, G, Zhang, S, Mahrhold, S, Lam, K, Stern, D, Bagramyan, K, Perry, K, Kalkum, M, Rummel, A, Dong, M, Jin, R.
Deposit date:2016-04-27
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A.
Nat.Struct.Mol.Biol., 23, 2016
4QD2
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BU of 4qd2 by Molmil
Molecular basis for disruption of E-cadherin adhesion by botulinum neurotoxin A complex
Descriptor: CALCIUM ION, Cadherin-1, Hemagglutinin component HA17, ...
Authors:Lee, K, Zhong, X, Gu, S, Kruel, A, Dorner, M.B, Perry, K, Rummel, A, Dong, M, Jin, R.
Deposit date:2014-05-13
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis for disruption of E-cadherin adhesion by botulinum neurotoxin A complex.
Science, 344, 2014
7C0Q
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BU of 7c0q by Molmil
a Legionella pneumophila effector Lpg2505
Descriptor: GLYCEROL, effector Lpg2505
Authors:Chen, T.T, Han, A.D, Luo, Z.Q, McCloskey, A, Perri, K.
Deposit date:2020-05-01
Release date:2021-02-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The metaeffector MesI regulates the activity of the Legionella effector SidI through direct protein-protein interactions.
Microbes Infect., 23, 2021
8UIV
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BU of 8uiv by Molmil
H47Q NicC with bound FAD
Descriptor: 6-hydroxynicotinate 3-monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hicks, K.A, Perry, K.
Deposit date:2023-10-10
Release date:2024-02-21
Method:X-RAY DIFFRACTION (1.511 Å)
Cite:Ligand bound structure of a 6-hydroxynicotinic acid 3-monooxygenase provides mechanistic insights.
Arch.Biochem.Biophys., 752, 2024
8UIQ
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BU of 8uiq by Molmil
H47Q NicC with 2-mercaptopyridine ligand
Descriptor: 2-PYRIDINETHIOL, 6-hydroxynicotinate 3-monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hicks, K.A, Perry, K, Turlington, Z.R, Vaz Ferreira de Macedo, S.
Deposit date:2023-10-10
Release date:2024-02-21
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Ligand bound structure of a 6-hydroxynicotinic acid 3-monooxygenase provides mechanistic insights.
Arch.Biochem.Biophys., 752, 2024
4QND
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BU of 4qnd by Molmil
Crystal structure of a SemiSWEET
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, Chemical transport protein, ...
Authors:Yan, X, Yuyong, T, Liang, F, Perry, K.
Deposit date:2014-06-17
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Structures of bacterial homologues of SWEET transporters in two distinct conformations.
Nature, 515, 2014
4KIS
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BU of 4kis by Molmil
Crystal Structure of a LSR-DNA Complex
Descriptor: CALCIUM ION, DNA (26-MER), Putative integrase [Bacteriophage A118], ...
Authors:Rutherford, K, Yuan, P, Perry, K, Van Duyne, G.D.
Deposit date:2013-05-02
Release date:2013-07-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Attachment site recognition and regulation of directionality by the serine integrases.
Nucleic Acids Res., 41, 2013
4GLI
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BU of 4gli by Molmil
Crystal Structure of Human SMN YG-Dimer
Descriptor: Maltose-binding periplasmic protein, Survival motor neuron protein chimera
Authors:Martin, R.S, Perry, K, Van Duyne, G.D.
Deposit date:2012-08-14
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:The survival motor neuron protein forms soluble glycine zipper oligomers.
Structure, 20, 2012
4E1H
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BU of 4e1h by Molmil
Fragment of human prion protein
Descriptor: CITRIC ACID, FE (III) ION, Major prion protein
Authors:Apostol, M.I, Perry, K, Surewicz, W.K.
Deposit date:2012-03-06
Release date:2013-03-06
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a human prion protein fragment reveals a motif for oligomer formation.
J.Am.Chem.Soc., 135, 2013
7ME4
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BU of 7me4 by Molmil
Structure of the extracellular WNT-binding module in Drosophila Ror2/Nrk
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITOLEIC ACID, Tyrosine-protein kinase transmembrane receptor Ror2
Authors:Mendrola, J.M, Shi, F, Perry, K, Stayrook, S.E, Lemmon, M.A.
Deposit date:2021-04-06
Release date:2021-10-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:ROR and RYK extracellular region structures suggest that receptor tyrosine kinases have distinct WNT-recognition modes.
Cell Rep, 37, 2021
7ME5
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BU of 7me5 by Molmil
Structure of the extracellular WNT-binding module in Drl-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tyrosine-protein kinase transmembrane receptor DRL-2
Authors:Shi, F, Mendrola, J.M, Perry, K, Stayrook, S.E, Lemmon, M.A.
Deposit date:2021-04-06
Release date:2021-10-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:ROR and RYK extracellular region structures suggest that receptor tyrosine kinases have distinct WNT-recognition modes.
Cell Rep, 37, 2021
6EDI
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BU of 6edi by Molmil
Crystal structure of Leishmania braziliensis glucokinase
Descriptor: Glucokinase
Authors:Buechner, G.S, Millington, M.E, Perry, K, D'Antonio, E.L.
Deposit date:2018-08-09
Release date:2018-08-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The crystal structure of glucokinase from Leishmania braziliensis.
Mol. Biochem. Parasitol., 227, 2019
3IX1
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BU of 3ix1 by Molmil
Periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein from Bacillus halodurans
Descriptor: N-[(4-amino-2-methylpyrimidin-5-yl)methyl]formamide, N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein
Authors:Bale, S, Rajashankar, K.R, Perry, K, Begley, T.P, Ealick, S.E.
Deposit date:2009-09-03
Release date:2010-10-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:HMP Binding Protein ThiY and HMP-P Synthase THI5 Are Structural Homologues.
Biochemistry, 49, 2010
4LO3
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BU of 4lo3 by Molmil
HA17-HA33-LacNac
Descriptor: HA-17, HA-33, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Lee, K, Gu, S, Jin, L, Le, T.T, Cheng, L.W, Strotmeier, J, Kruel, A.M, Yao, G, Perry, K, Rummel, A, Jin, R.
Deposit date:2013-07-12
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.249 Å)
Cite:Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
Plos Pathog., 9, 2013
4LO0
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BU of 4lo0 by Molmil
Apo HA17-HA33
Descriptor: HA-17, HA-33
Authors:Lee, K, Gu, S, Jin, L, Le, T.T, Cheng, L.W, Strotmeier, J, Kruel, A.M, Yao, G, Perry, K, Rummel, A, Jin, R.
Deposit date:2013-07-12
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.055 Å)
Cite:Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
Plos Pathog., 9, 2013
4LO2
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BU of 4lo2 by Molmil
HA17-HA33-Lac
Descriptor: HA-17, HA-33, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Lee, K, Gu, S, Jin, L, Le, T.T, Cheng, L.W, Strotmeier, J, Kruel, A.M, Yao, G, Perry, K, Rummel, A, Jin, R.
Deposit date:2013-07-12
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.254 Å)
Cite:Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
Plos Pathog., 9, 2013
4LO4
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BU of 4lo4 by Molmil
Apo HA-70
Descriptor: CHLORIDE ION, HA-70
Authors:Lee, K, Gu, S, Jin, L, Le, T.T, Cheng, L.W, Strotmeier, J, Kruel, A.M, Yao, G, Perry, K, Rummel, A, Jin, R.
Deposit date:2013-07-12
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.871 Å)
Cite:Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
Plos Pathog., 9, 2013
4LO1
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BU of 4lo1 by Molmil
HA17-HA33-Gal
Descriptor: HA-17, HA-33, beta-D-galactopyranose
Authors:Lee, K, Gu, S, Jin, L, Le, T.T, Cheng, L.W, Strotmeier, J, Kruel, A.M, Yao, G, Perry, K, Rummel, A, Jin, R.
Deposit date:2013-07-12
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.254 Å)
Cite:Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
Plos Pathog., 9, 2013
4LO5
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BU of 4lo5 by Molmil
HA70-alpha2,3-SiaLC
Descriptor: CHLORIDE ION, HA-70, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Lee, K, Gu, S, Jin, L, Le, T.T, Cheng, L.W, Strotmeier, J, Kruel, A.M, Yao, G, Perry, K, Rummel, A, Jin, R.
Deposit date:2013-07-12
Release date:2013-10-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
Plos Pathog., 9, 2013

 

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