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2DT5
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CRYSTAL STRUCTURE OF TTHA1657 (AT-RICH DNA-BINDING PROTEIN) FROM THERMUS THERMOPHILUS HB8
Descriptor:AT-rich DNA-binding protein, SULFATE ION, CHLORIDE ION, ...
Authors:Nakamura, A., Sosa, A., Komori, H., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-11
Release date:2007-01-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A resolution
Proteins, 66, 2007
3A11
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Translation initiation factor eIF-2B, delta subunit, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, A., Fujihashi, M., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-03-31
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3A9C
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1 IN COMPLEX WITH RIBULOSE-1,5-BISPHOSPHATE
Descriptor:Translation initiation factor eIF-2B, delta subunit, RIBULOSE-1,5-DIPHOSPHATE, ...
Authors:Nakamura, A., Fujihashi, M., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-22
Release date:2010-11-03
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3VM6
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARENSIS KOD1 IN COMPLEX WITH ALPHA-D-RIBOSE-1,5-BISPHOSPHATE
Descriptor:Translation initiation factor eIF-2B, delta subunit, 1,5-di-O-phosphono-alpha-D-ribofuranose, ...
Authors:Nakamura, A., Fujihashi, M., Aono, R., Sato, T., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2011-12-08
Release date:2012-04-25
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3X2N
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PROTON RELAY PATHWAY IN INVERTING CELLULASE
Descriptor:Endoglucanase V-like protein, SULFATE ION
Authors:Nakamura, A., Ishida, T., Fushinobu, S., Igarashi, K., Samejima, M.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
2DF4
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH MN2+
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-02-23
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2DQN
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH ASN
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-05-29
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2E1O
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SOLUTION STRUCTURE OF RSGI RUH-028, A HOMEOBOX DOMAIN FROM HUMAN CDNA
Descriptor:Homeobox protein PRH
Authors:Nakamura, A., Ohnishi, S., Abe, T., Nameki, N., Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S., Kawaii, S., Hirota, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-27
Release date:2006-11-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of RSGI RUH-028, a homeobox domain from human cDNA
To be Published
2F2A
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH GLN
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2005-11-15
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2G5H
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-02-23
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2G5I
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH ADP-ALF4
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-02-23
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2Z9O
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CRYSTAL STRUCTURE OF THE DIMERIC FORM OF REPE IN COMPLEX WITH THE REPE OPERATOR DNA
Descriptor:DNA (33-MER), Replication initiation protein
Authors:Nakamura, A., Wada, C., Miki, K.
Deposit date:2007-09-21
Release date:2007-11-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structural basis for regulation of bifunctional roles in replication initiator protein
Proc.Natl.Acad.Sci.Usa, 104, 2007
3A6M
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CRYSTAL STRUCTURE OF GRPE FROM THERMUS THERMOPHILUS HB8
Descriptor:Protein grpE
Authors:Nakamura, A., Takumi, K., Miki, K.
Deposit date:2009-09-03
Release date:2010-01-12
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Crystal structure of a thermophilic GrpE protein: insight into thermosensing function for the DnaK chaperone system
J.Mol.Biol., 396, 2010
3IP4
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THE HIGH RESOLUTION STRUCTURE OF GATCAB
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2009-08-17
Release date:2009-11-24
Last modified:2014-02-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition
Nucleic Acids Res., 38, 2010
3WBZ
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CRYSTAL STRUCTURE OF C. ALBICANS TRNA(HIS) GUANYLYLTRANSFERASE (THG1) WITH ATP
Descriptor:Likely histidyl tRNA-specific guanylyltransferase, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
Deposit date:2013-05-24
Release date:2013-12-18
Last modified:2014-02-05
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:Structural basis of reverse nucleotide polymerization
Proc.Natl.Acad.Sci.USA, 110, 2013
3WC0
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CRYSTAL STRUCTURE OF C. ALBICANS TRNA(HIS) GUANYLYLTRANSFERASE (THG1) WITH GTP
Descriptor:Likely histidyl tRNA-specific guanylyltransferase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
Deposit date:2013-05-24
Release date:2013-12-18
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Structural basis of reverse nucleotide polymerization
Proc.Natl.Acad.Sci.USA, 110, 2013
3WC1
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CRYSTAL STRUCTURE OF C. ALBICANS TRNA(HIS) GUANYLYLTRANSFERASE (THG1) WITH A G-1 DELETED TRNA(HIS)
Descriptor:Likely histidyl tRNA-specific guanylyltransferase, 75-mer tRNA
Authors:Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
Deposit date:2013-05-24
Release date:2013-12-18
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (4.18 Å)
Cite:Structural basis of reverse nucleotide polymerization
Proc.Natl.Acad.Sci.USA, 110, 2013
3WC2
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CRYSTAL STRUCTURE OF C. ALBICANS TRNA(HIS) GUANYLYLTRANSFERASE (THG1) WITH A TRNA(PHE)(GUG)
Descriptor:Likely histidyl tRNA-specific guanylyltransferase, 76mer-tRNA
Authors:Nakamura, A., Nemoto, T., Sonoda, T., Yamashita, K., Tanaka, I., Yao, M.
Deposit date:2013-05-24
Release date:2013-12-18
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.641 Å)
Cite:Structural basis of reverse nucleotide polymerization
Proc.Natl.Acad.Sci.USA, 110, 2013
3X2G
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X-RAY STRUCTURE OF PCCEL45A N92D APO FORM AT 100K
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2H
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X-RAY STRUCTURE OF PCCEL45A N92D WITH CELLOPENTAOSE AT 95K.
Descriptor:Endoglucanase V-like protein, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2I
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X-RAY STRUCTURE OF PCCEL45A N92D APO FORM AT 298K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2J
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X-RAY STRUCTURE OF PCCEL45A D114N APO FORM AT 95K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.301 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2K
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X-RAY STRUCTURE OF PCCEL45A D114N WITH CELLOPENTAOSE AT 95K.
Descriptor:Endoglucanase V-like protein, CELLOPENTAOSE, ALPHA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.182 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2L
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X-RAY STRUCTURE OF PCCEL45A APO FORM AT 95K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Nakamura, A., Ishida, T., Ohta, K., Tanaka, H., Inaka, K., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2015-12-30
Method:X-RAY DIFFRACTION (0.83 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2M
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X-RAY STRUCTURE OF PCCEL45A WITH CELLOPENTAOSE AT 0.64 ANGSTROM RESOLUTION.
Descriptor:Endoglucanase V-like protein, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2015-12-30
Method:X-RAY DIFFRACTION (0.64 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015