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1GIF
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BU of 1gif by Molmil
HUMAN GLYCOSYLATION-INHIBITING FACTOR
Descriptor: GLYCOSYLATION-INHIBITING FACTOR
Authors:Kato, Y, Kuroki, R.
Deposit date:1996-02-27
Release date:1997-03-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of human glycosylation-inhibiting factor is a trimeric barrel with three 6-stranded beta-sheets.
Proc.Natl.Acad.Sci.USA, 93, 1996
1LF8
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BU of 1lf8 by Molmil
Complex of GGA3-VHS Domain and CI-MPR C-terminal Phosphopeptide
Descriptor: ADP-ribosylation factor binding protein GGA3, Cation-independent mannose-6-phosphate receptor
Authors:Kato, Y, Misra, S, Puertollano, R, Hurley, J.H, Bonifacino, J.S.
Deposit date:2002-04-10
Release date:2002-06-26
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Phosphoregulation of sorting signal-VHS domain interactions by a direct electrostatic mechanism.
Nat.Struct.Biol., 9, 2002
1ZR7
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BU of 1zr7 by Molmil
Solution structure of the first WW domain of FBP11
Descriptor: huntingtin-interacting protein HYPA/FBP11
Authors:Kato, Y, Hino, Y, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2006-05-30
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure and binding specificity of FBP11/HYPA WW domain as Group-II/III
Proteins, 63, 2006
2DYF
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BU of 2dyf by Molmil
Solution structure of the first WW domain of FBP11 / HYPA (FBP11 WW1) complexed with a PL (PPLP) motif peptide ligand
Descriptor: Huntingtin-interacting protein HYPA/FBP11, PL (PPLP) motif peptide from Myosin tail region-interacting protein MTI1
Authors:Kato, Y, Miyakawa, T, Kurita, J, Tanokura, M.
Deposit date:2006-09-11
Release date:2006-10-24
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Complex structure of fbp11 ww1 and a pl ligand reveals the mechanism of proline-rich ligand recognition by group-II/III ww domains
To be Published
8I5A
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BU of 8i5a by Molmil
N-acetyl-(R)-beta-phenylalanine acylase, 2.75 angstrom resolution
Descriptor: N-acetyl-(R)-beta-phenylalanine acylase
Authors:Kato, Y, Natsume, R.
Deposit date:2023-01-24
Release date:2023-03-15
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Expression, purification and crystallization of N-acetyl-(R)-beta-phenylalanine acylases derived from Burkholderia sp. AJ110349 and Variovorax sp. AJ110348 and structure determination of the Burkholderia enzyme.
Acta Crystallogr.,Sect.F, 79, 2023
8I59
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BU of 8i59 by Molmil
N-acetyl-(R)-beta-phenylalanine acylase, selenomethionyl derivative
Descriptor: N-acetyl-(R)-beta-phenylalanine acylase
Authors:Kato, Y, Natsume, R.
Deposit date:2023-01-24
Release date:2023-03-15
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Expression, purification and crystallization of N-acetyl-(R)-beta-phenylalanine acylases derived from Burkholderia sp. AJ110349 and Variovorax sp. AJ110348 and structure determination of the Burkholderia enzyme.
Acta Crystallogr.,Sect.F, 79, 2023
8HUY
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BU of 8huy by Molmil
N-acetyl-(R)-beta-phenylalanine acylase
Descriptor: Chains: A,B
Authors:Kato, Y, Natsume, R.
Deposit date:2022-12-24
Release date:2023-03-15
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Expression, purification and crystallization of N-acetyl-(R)-beta-phenylalanine acylases derived from Burkholderia sp. AJ110349 and Variovorax sp. AJ110348 and structure determination of the Burkholderia enzyme.
Acta Crystallogr.,Sect.F, 79, 2023
6L3S
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BU of 6l3s by Molmil
Crystal structure of metallo-beta-lactamase IMP-27 from Morganella morganii
Descriptor: IMP-27 metallo-beta-lactamase, ZINC ION
Authors:Kato, Y, Shimizu-Ibuka, A.
Deposit date:2019-10-15
Release date:2020-10-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the metallo-beta-lactamase IMP-27
To Be Published
5ZJ9
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BU of 5zj9 by Molmil
human D-amino acid oxidase complexed with 5-chlorothiophene-3-carboxylic acid
Descriptor: 5-chloro thiophene-3-carboxylic acid, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Kato, Y, Hin, N, Maita, N, Thomas, A.G, Kurosawa, S, Rojas, C, Yorita, K, Slusher, B.S, Fukui, K, Tsukamoto, T.
Deposit date:2018-03-19
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for potent inhibition of d-amino acid oxidase by thiophene carboxylic acids
Eur J Med Chem, 159, 2018
5ZJA
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BU of 5zja by Molmil
human D-amino acid oxidase complexed with 5-chlorothiophene-2-carboxylic acid
Descriptor: 5-chloro thiophene-2-carboxylic acid, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Kato, Y, Hin, N, Maita, N, Thomas, A.G, Kurosawa, S, Rojas, C, Yorita, K, Slusher, B.S, Fukui, K, Tsukamoto, T.
Deposit date:2018-03-19
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for potent inhibition of d-amino acid oxidase by thiophene carboxylic acids
Eur J Med Chem, 159, 2018
1IV9
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BU of 1iv9 by Molmil
Crystal Structure of Single Chain Monellin
Descriptor: Monellin
Authors:Tamada, T, Kato, Y, Kuroki, R.
Deposit date:2002-03-15
Release date:2003-10-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Effect of Single Chain Derivatization on the Structure and Stability of the Monellin
To be Published
1IV7
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BU of 1iv7 by Molmil
Crystal Structure of Single Chain Monellin
Descriptor: Monellin
Authors:Tamada, T, Kato, Y, Kuroki, R.
Deposit date:2002-03-15
Release date:2003-10-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Effect of Single Chain Derivatization on the Structure and Stability of the Monellin
To be Published
1EHA
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BU of 1eha by Molmil
CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE FROM SULFOLOBUS SOLFATARICUS
Descriptor: GLYCOSYLTREHALOSE TREHALOHYDROLASE
Authors:Feese, M.D, Kato, Y, Tamada, T, Kato, M, Komeda, T, Kobayashi, K, Kuroki, R.
Deposit date:2000-02-19
Release date:2001-02-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus.
J.Mol.Biol., 301, 2000
1EH9
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BU of 1eh9 by Molmil
CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS GLYCOSYLTREHALOSE TREHALOHYDROLASE
Descriptor: GLYCOSYLTREHALOSE TREHALOHYDROLASE
Authors:Feese, M.D, Kato, Y, Tamada, T, Kato, M, Komeda, T, Kobayashi, K, Kuroki, R.
Deposit date:2000-02-19
Release date:2001-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus.
J.Mol.Biol., 301, 2000
5TNT
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BU of 5tnt by Molmil
Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Coagulation factor IX, N-[(1S,4S,7R)-2-(3-amino-4-chloro[1,2]oxazolo[5,4-c]pyridin-7-yl)-2-azabicyclo[2.2.1]heptan-7-yl]-2-chloro-4-(3-methyl-1H-1,2,4-triazol-1-yl)benzamide, ...
Authors:Sakurada, I, Endo, T, Hikita, K, Hirabayashi, T, Hosaka, Y, Kato, Y, Maeda, Y, Matsumoto, S, Mizuno, T, Nagasue, A, Nishimura, T, Shimada, S, Shinozaki, M, Taguchi, K, Takeuchi, K, Yokoyama, T, Hruza, A, Reichert, P, Zhang, T, Wood, H.B, Nakao, K, Furusako, S.
Deposit date:2016-10-14
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
5TNO
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BU of 5tno by Molmil
Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Coagulation factor IX, SODIUM ION, ...
Authors:Sakurada, I, Endo, T, Hikita, K, Hirabayashi, T, Hosaka, Y, Kato, Y, Maeda, Y, Matsumoto, S, Mizuno, T, Nagasue, H, Nishimura, T, Shimada, S, Shinozaki, M, Taguchi, K, Takeuchi, K, Yokoyama, T, Hruza, A, Reichert, P, Zhang, T, Wood, H.B, Nakao, K, Furusako, S.
Deposit date:2016-10-14
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
1V7M
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BU of 1v7m by Molmil
Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab
Descriptor: Monoclonal TN1 Fab Heavy Chain, Monoclonal TN1 Fab Light Chain, Thrombopoietin
Authors:Feese, M.D, Tamada, T, Kato, Y, Maeda, Y, Hirose, M, Matsukura, Y, Shigematsu, H, Kato, T, Miyazaki, H, Kuroki, R.
Deposit date:2003-12-18
Release date:2004-03-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
Proc.Natl.Acad.Sci.USA, 101, 2004
1V7N
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BU of 1v7n by Molmil
Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab
Descriptor: Monoclonal TN1 Fab Heavy Chain, Monoclonal TN1 Fab Light Chain, Thrombopoietin
Authors:Feese, M.D, Tamada, T, Kato, Y, Maeda, Y, Hirose, M, Matsukura, Y, Shigematsu, H, Kato, T, Miyazaki, H, Kuroki, R.
Deposit date:2003-12-18
Release date:2004-03-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
Proc.Natl.Acad.Sci.USA, 101, 2004
7C95
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BU of 7c95 by Molmil
Crystal structure of the anti-human podoplanin antibody Fab fragment
Descriptor: GLYCEROL, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
Authors:Nakamura, S, Suzuki, K, Ogasawara, S, Naruchi, K, Shimabukuro, J, Tukahara, N, Kaneko, M.K, Kato, Y, Murata, T.
Deposit date:2020-06-04
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of an anti-podoplanin antibody bound to a disialylated O-linked glycopeptide.
Biochem.Biophys.Res.Commun., 533, 2020
7C94
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BU of 7c94 by Molmil
Crystal structure of the anti-human podoplanin antibody Fab fragment complex with glycopeptide
Descriptor: GLYCEROL, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
Authors:Suzuki, K, Nakamura, S, Ogasawara, S, Naruchi, K, Shimabukuro, J, Tukahara, N, Kaneko, M.K, Kato, Y, Murata, T.
Deposit date:2020-06-04
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Crystal structure of an anti-podoplanin antibody bound to a disialylated O-linked glycopeptide.
Biochem.Biophys.Res.Commun., 533, 2020
1KKO
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BU of 1kko by Molmil
CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE
Descriptor: 3-METHYLASPARTATE AMMONIA-LYASE, SULFATE ION
Authors:Levy, C.W, Buckley, P.A, Sedelnikova, S, Kato, Y, Asano, Y, Rice, D.W, Baker, P.J.
Deposit date:2001-12-10
Release date:2002-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Insights into enzyme evolution revealed by the structure of methylaspartate ammonia lyase.
Structure, 10, 2002
5GIS
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BU of 5gis by Molmil
Crystal structure of a Fab fragment with its ligand peptide
Descriptor: Heavy chain of Fab fragment, Light chain of Fab fragment, SULFATE ION, ...
Authors:Kitago, Y, Kaneko, K.K, Ogasawara, S, Kato, Y, Takagi, J.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural basis for multi-specific peptide recognition by the anti-IDH1/2 monoclonal antibody, MsMab-1.
Biochem. Biophys. Res. Commun., 478, 2016
5GIR
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BU of 5gir by Molmil
Crystal structure of a Fab fragment with its ligand peptide
Descriptor: 1,2-ETHANEDIOL, Heavy chain of Fab fragment, LYS-PRO-ILE-ILE-ILE-GLY-SER-HIS-ALA-TYR-GLY-ASP, ...
Authors:Kitago, Y, Kaneko, K.K, Ogasawara, S, Kato, Y, Takagi, J.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural basis for multi-specific peptide recognition by the anti-IDH1/2 monoclonal antibody, MsMab-1.
Biochem. Biophys. Res. Commun., 478, 2016
3A16
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BU of 3a16 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Propionaldoxime
Descriptor: (1Z)-propanal oxime, Aldoxime dehydratase, MAGNESIUM ION, ...
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A18
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BU of 3a18 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (soaked crystal)
Descriptor: (1Z)-butanal oxime, Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009

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