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4UWA
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BU of 4uwa by Molmil
Structure of the ryanodine receptor at resolution of 6.1 A in closed state
Descriptor: RYANODINE RECEPTOR 1
Authors:Efremov, R.G, Leitner, A, Aebersold, R, Raunser, S.
Deposit date:2014-08-11
Release date:2014-12-10
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Architecture and Conformational Switch Mechanism of the Ryanodine Receptor.
Nature, 517, 2015
4UWE
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BU of 4uwe by Molmil
Structure of the ryanodine receptor at resolution of 8.5 A in partially open state
Descriptor: RYANODINE RECEPTOR 1
Authors:Efremov, R.G, Leitner, A, Aebersold, R, Raunser, S.
Deposit date:2014-08-11
Release date:2014-12-10
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Architecture and Conformational Switch Mechanism of the Ryanodine Receptor.
Nature, 517, 2015
3M9C
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BU of 3m9c by Molmil
Crystal structure of the membrane domain of respiratory complex I from Escherichia coli
Descriptor: NADH-quinone oxidoreductase subunit NuoL, NADH-quinone oxidoreductase subunit NuoM, NADH-quinone oxidoreductase subunit NuoN, ...
Authors:Efremov, R.G, Baradaran, R, Sazanov, L.A.
Deposit date:2010-03-22
Release date:2010-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:The architecture of respiratory complex I
Nature, 465, 2010
3M9S
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BU of 3m9s by Molmil
Crystal structure of respiratory complex I from Thermus thermophilus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Efremov, R.G, Baradaran, R, Sazanov, L.A.
Deposit date:2010-03-22
Release date:2010-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:The architecture of respiratory complex I
Nature, 465, 2010
3POQ
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BU of 3poq by Molmil
Crystal structure of E.coli OmpF porin in lipidic cubic phase: space group H32, small unit cell
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OmpF protein, THIOCYANATE ION
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2010-11-23
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Escherichia coli OmpF porin from lipidic mesophase.
J.Struct.Biol., 178, 2012
3POU
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BU of 3pou by Molmil
Crystal structure of E.coli OmpF porin in lipidic cubic phase: space group H32, large unit cell
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OmpF protein
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2010-11-23
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of Escherichia coli OmpF porin from lipidic mesophase.
J.Struct.Biol., 178, 2012
3POX
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BU of 3pox by Molmil
Crystal Structure of E.coli OmpF porin in lipidic cubic phase: space group P1
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OmpF protein, POTASSIUM ION, ...
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2010-11-23
Release date:2012-03-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Escherichia coli OmpF porin from lipidic mesophase.
J.Struct.Biol., 178, 2012
3RKO
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BU of 3rko by Molmil
Crystal structure of the membrane domain of respiratory complex I from E. coli at 3.0 angstrom resolution
Descriptor: 7-cyclohexylheptyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, EICOSANE, NADH-QUINONE OXIDOREDUCTASE SUBUNIT A, ...
Authors:Efremov, R.G, Sazanov, L.A.
Deposit date:2011-04-18
Release date:2011-08-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the membrane domain of respiratory complex I.
Nature, 476, 2011
6FOO
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BU of 6foo by Molmil
Structure of Ryanodine Receptor 1 in nanodiscs in the presence of calcium and ATP
Descriptor: Ryanodine receptor 1, ZINC ION
Authors:Willegems, K, Efremov, R.G.
Deposit date:2018-02-08
Release date:2018-08-08
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure, 26, 2018
5T8A
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BU of 5t8a by Molmil
Recombinant cytotoxin-I from the venom of cobra N. oxiana
Descriptor: Cytotoxin 1
Authors:Dubovskii, P.V, Dubinnyi, M.A, Shulepko, M.A, Lyukmanova, E.N, Dolgikh, D.A, Kirpichnikov, M.P, Efremov, R.G.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?
Biochemistry, 56, 2017
1ZAD
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BU of 1zad by Molmil
Structure of cytotoxin I (CTI) from Naja Oxiana in complex with DPC micelle
Descriptor: Cytotoxin 1
Authors:Dubinnyi, M.A, Pustovalova, Y.E, Dubovskii, P.V, Utkin, Y.N, Konshina, A.G, Efremov, R.G, Arseniev, A.S.
Deposit date:2005-04-06
Release date:2006-06-20
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Interaction of three-finger toxins with phospholipid membranes: comparison of S- and P-type cytotoxins
Biochem.J., 387, 2005
7QD5
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BU of 7qd5 by Molmil
Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 48 bp long transposon end DNA
Descriptor: IR48 DNA substrate, non transferred strand, IR48 transferred strand, ...
Authors:Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
Deposit date:2021-11-26
Release date:2022-10-26
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
7QD8
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BU of 7qd8 by Molmil
Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in apo state
Descriptor: Transposase for transposon Tn4430
Authors:Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
Deposit date:2021-11-26
Release date:2022-10-26
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
7QD6
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BU of 7qd6 by Molmil
Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with strand-transfer like DNA product
Descriptor: IR71st non transferred strand, IR71st transferred strand, Transposase for transposon Tn4430
Authors:Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
Deposit date:2021-11-26
Release date:2022-10-26
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
7QD4
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BU of 7qd4 by Molmil
Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 100 bp long transposon end DNA
Descriptor: IR100 DNA substrate, none transferred strand, transferred strand, ...
Authors:Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
Deposit date:2021-11-26
Release date:2022-10-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
1DXZ
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BU of 1dxz by Molmil
M2 TRANSMEMBRANE SEGMENT OF ALPHA-SUBUNIT OF NICOTINIC ACETYLCHOLINE RECEPTOR FROM TORPEDO CALIFORNICA, NMR, 20 STRUCTURES
Descriptor: ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN
Authors:Pashkov, V.S, Maslennikov, I.V, Tchikin, L.D, Efremov, R.G, Ivanov, V.T, Arseniev, A.S.
Deposit date:2000-01-20
Release date:2000-02-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Spatial Structure of the M2 Transmembrane Segment of the Nicotinic Acetylcholine Receptor Alpha-Subunit
FEBS Lett., 457, 1999
5NQ4
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BU of 5nq4 by Molmil
Cytotoxin-1 in DPC-micelle
Descriptor: Cytotoxin 1
Authors:Dubovskii, P.V, Dubinnyi, M.A, Volynsky, P.E, Pustovalova, Y.E, Konshina, A.G, Utkin, Y.N, Efremov, R.G, Arseniev, A.S.
Deposit date:2017-04-19
Release date:2017-12-13
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Impact of membrane partitioning on the spatial structure of an S-type cobra cytotoxin.
J. Biomol. Struct. Dyn., 36, 2018
1IH9
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BU of 1ih9 by Molmil
NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles
Descriptor: ZERVAMICIN IIB
Authors:Shenkarev, Z.O, Balasheva, T.A, Efremov, R.G, Yakimenko, Z.A, Ovchinnikova, T.V, Raap, J, Arseniev, A.S.
Deposit date:2001-04-19
Release date:2002-02-13
Last modified:2012-12-12
Method:SOLUTION NMR
Cite:Spatial Structure of Zervamicin Iib Bound to Dpc Micelles: Implications for Voltage-Gating.
Biophys.J., 82, 2002
2PCO
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BU of 2pco by Molmil
Spatial Structure and Membrane Permeabilization for Latarcin-1, a Spider Antimicrobial Peptide
Descriptor: Latarcin-1
Authors:Dubovskii, P.V, Volynsky, P.E, Polyansky, A.A, Chupin, V.V, Efremov, R.G, Arseniev, A.S.
Deposit date:2007-03-30
Release date:2008-03-18
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Three-dimensional structure/hydrophobicity of latarcins specifies their mode of membrane activity.
Biochemistry, 47, 2008
4O9Y
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BU of 4o9y by Molmil
Crystal Structure of TcdA1
Descriptor: TcdA1
Authors:Meusch, D, Gatsogiannis, C, Efremov, R.G, Lang, A.E, Hofnagel, O, Vetter, I.R, Aktories, K, Raunser, S.
Deposit date:2014-01-03
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.502 Å)
Cite:Mechanism of Tc toxin action revealed in molecular detail.
Nature, 508, 2014
4O9X
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BU of 4o9x by Molmil
Crystal Structure of TcdB2-TccC3
Descriptor: MERCURY (II) ION, TcdB2, TccC3
Authors:Meusch, D, Gatsogiannis, C, Efremov, R.G, Lang, A.E, Hofnagel, O, Vetter, I.R, Aktories, K, Raunser, S.
Deposit date:2014-01-03
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Mechanism of Tc toxin action revealed in molecular detail.
Nature, 508, 2014
5LUE
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BU of 5lue by Molmil
Minor form of the recombinant cytotoxin-1 from N. oxiana
Descriptor: VC-1=CYTOTOXIN
Authors:Dubovskii, P.V, Dubinnyi, M.A, Shulepko, M.A, Lyukmanova, E.N, Dolgikh, D.A, Kirpichnikov, M.P, Efremov, R.G.
Deposit date:2016-09-08
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?
Biochemistry, 56, 2017
6FG3
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BU of 6fg3 by Molmil
Structure of Ryanodine receptor 1 in nanodiscs in the presence of calcium, ATP and ryanodine
Descriptor: CALCIUM ION, Ryanodine receptor 1, ZINC ION
Authors:Willegems, K, Efremov, R.G.
Deposit date:2018-01-09
Release date:2018-08-08
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure, 26, 2018
2G9P
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BU of 2g9p by Molmil
NMR structure of a novel antimicrobial peptide, latarcin 2a, from spider (Lachesana tarabaevi) venom
Descriptor: antimicrobial peptide Latarcin 2a
Authors:Dubovskii, P.V, Volynsky, P.E, Polyansky, A.A, Chupin, V.V, Efremov, R.G, Arseniev, A.S.
Deposit date:2006-03-07
Release date:2006-09-12
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Spatial structure and activity mechanism of a novel spider antimicrobial peptide.
Biochemistry, 45, 2006
7NYH
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BU of 7nyh by Molmil
Respiratory complex I from Escherichia coli - focused refinement of membrane arm
Descriptor: NADH-quinone oxidoreductase subunit A, NADH-quinone oxidoreductase subunit H, NADH-quinone oxidoreductase subunit J, ...
Authors:Kolata, P, Efremov, R.G.
Deposit date:2021-03-22
Release date:2021-08-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation.
Elife, 10, 2021

 

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