Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1FUF
DownloadVisualize
BU of 1fuf by Molmil
CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE
Descriptor: (5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3'), MAGNESIUM ION, SPERMINE
Authors:Deng, J, Xiong, Y, Sudarsanakumar, C, Shi, K, Sundaralingam, M.
Deposit date:2000-09-15
Release date:2001-11-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA, 7, 2001
1XDN
DownloadVisualize
BU of 1xdn by Molmil
High resolution crystal structure of an editosome enzyme from trypanosoma brucei: RNA editing ligase 1
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA editing ligase MP52
Authors:Deng, J, Schnaufer, A, Salavati, R, Stuart, K.D, Hol, W.G.
Deposit date:2004-09-07
Release date:2004-12-07
Last modified:2014-09-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High resolution crystal structure of a key editosome enzyme from Trypanosoma brucei: RNA editing ligase 1.
J.Mol.Biol., 343, 2004
2B51
DownloadVisualize
BU of 2b51 by Molmil
Structural Basis for UTP Specificity of RNA Editing TUTases from Trypanosoma Brucei
Descriptor: MANGANESE (II) ION, RNA editing complex protein MP57, URIDINE 5'-TRIPHOSPHATE
Authors:Deng, J, Ernst, N.L, Turley, S, Stuart, K.D, Hol, W.G.
Deposit date:2005-09-27
Release date:2005-11-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei.
Embo J., 24, 2005
2B4V
DownloadVisualize
BU of 2b4v by Molmil
Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei
Descriptor: POTASSIUM ION, RNA editing complex protein MP57
Authors:Deng, J, Ernst, N.L, Turley, S, Stuart, K.D, Hol, W.G.
Deposit date:2005-09-26
Release date:2005-11-22
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei.
Embo J., 24, 2005
2B56
DownloadVisualize
BU of 2b56 by Molmil
Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei
Descriptor: MAGNESIUM ION, RNA editing complex protein MP57, URIDINE 5'-TRIPHOSPHATE, ...
Authors:Deng, J, Ernst, N.L, Turley, S, Stuart, K.D, Hol, W.G.
Deposit date:2005-09-27
Release date:2005-11-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei.
Embo J., 24, 2005
2ZEJ
DownloadVisualize
BU of 2zej by Molmil
Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPase
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat kinase 2, MAGNESIUM ION
Authors:Deng, J.
Deposit date:2007-12-13
Release date:2008-01-22
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPase
Proc.Natl.Acad.Sci.Usa, 105, 2008
3D6T
DownloadVisualize
BU of 3d6t by Molmil
Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPase
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2, MAGNESIUM ION
Authors:Deng, J.
Deposit date:2008-05-20
Release date:2008-06-10
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPase
Proc.Natl.Acad.Sci.Usa, 105, 2008
1J8G
DownloadVisualize
BU of 1j8g by Molmil
X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution
Descriptor: 5'-R(*UP*GP*GP*GP*GP*U)-3', CALCIUM ION, SODIUM ION, ...
Authors:Deng, J, Xiong, Y, Sundaralingam, M.
Deposit date:2001-05-21
Release date:2001-11-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (0.61 Å)
Cite:X-ray analysis of an RNA tetraplex (UGGGGU)(4) with divalent Sr(2+) ions at subatomic resolution (0.61 A).
Proc.Natl.Acad.Sci.USA, 98, 2001
1IK5
DownloadVisualize
BU of 1ik5 by Molmil
Crystal Structure of a 14mer RNA Containing Double UU Bulges in Two Crystal Forms: A Novel U*(AU) Intramolecular Base Triple
Descriptor: 5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3', 5'-R(*GP*GP*UP*AP*UP*UP*UP*UP*GP*GP*UP*AP*(CBR)P*C)-3', MAGNESIUM ION
Authors:Deng, J, Xiong, Y, Sudarsanakumar, C, Shi, K, Sundaralingam, M.
Deposit date:2001-05-02
Release date:2001-11-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA, 7, 2001
1JUX
DownloadVisualize
BU of 1jux by Molmil
1.6A Resolution Crystal Structures of the DNA Octamers d(IUATATAC) and d(ITITACAC):Binding of Two Distamycin Drugs Side-by-Side
Descriptor: 5'-D(*IP*TP*IP*TP*AP*CP*AP*C)-3', DISTAMYCIN A
Authors:Deng, J, Pan, B, Sundaralingam, M.
Deposit date:2001-08-28
Release date:2004-01-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of d(ITITACAC) complexed with distamycin at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 59, 2003
1LNT
DownloadVisualize
BU of 1lnt by Molmil
Crystal Structure of the Highly Conserved RNA Internal Loop of SRP
Descriptor: 5'-R(*CP*GP*GP*AP*AP*GP*CP*AP*GP*(CBV)P*GP*C)-3', 5'-R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CBV)P*G)-3', CALCIUM ION, ...
Authors:Deng, J, Xiong, Y, Pan, B, Sundaralingam, M.
Deposit date:2002-05-03
Release date:2003-06-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of an RNA dodecamer containing a fragment from SRP domain IV of Escherichia coli.
Acta Crystallogr.,Sect.D, 59, 2003
472D
DownloadVisualize
BU of 472d by Molmil
STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS
Descriptor: RNA (5'-R(*GP*UP*AP*GP*GP*CP*AP*C)-3'), RNA (5'-R(*GP*UP*GP*UP*UP*UP*AP*C)-3')
Authors:Deng, J, Sundaralingam, M.
Deposit date:1999-05-14
Release date:2000-11-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Synthesis and crystal structure of an octamer RNA r(guguuuac)/r(guaggcac) with G.G/U.U tandem wobble base pairs: comparison with other tandem G.U pairs.
Nucleic Acids Res., 28, 2000
7V9E
DownloadVisualize
BU of 7v9e by Molmil
Crystal structure of a methyl transferase ribozyme
Descriptor: BARIUM ION, GUANINE, RNA (68-MER), ...
Authors:Deng, J, Lilley, D.M.J, Huang, L.
Deposit date:2021-08-25
Release date:2022-03-23
Last modified:2022-05-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and mechanism of a methyltransferase ribozyme.
Nat.Chem.Biol., 18, 2022
6WIG
DownloadVisualize
BU of 6wig by Molmil
Structure of STENOFOLIA Protein HD domain bound with DNA
Descriptor: DNA (5'-D(P*CP*TP*TP*GP*AP*AP*TP*AP*AP*AP*TP*CP*AP*TP*TP*AP*AP*TP*TP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*AP*AP*TP*TP*AP*AP*TP*GP*AP*TP*TP*TP*AP*TP*TP*CP*AP*AP*G)-3'), STENOFOLIA
Authors:Deng, J, Peng, S, Pathak, P.
Deposit date:2020-04-09
Release date:2021-08-11
Last modified:2022-02-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the unique tetrameric STENOFOLIA homeodomain bound with target promoter DNA.
Acta Crystallogr D Struct Biol, 77, 2021
5UC4
DownloadVisualize
BU of 5uc4 by Molmil
Hsp90b N-terminal domain with inhibitors
Descriptor: 5-Hydroxy-4-(isoindoline-2-carbonyl)-2-isopropylbenzaldehyde, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Deng, J, Peng, S, Balch, M, Matts, R.
Deposit date:2016-12-21
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure-guided design of an Hsp90 beta N-terminal isoform-selective inhibitor.
Nat Commun, 9, 2018
6BR9
DownloadVisualize
BU of 6br9 by Molmil
Structure of A6 reveals a novel lipid transporter
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Protein A6 homolog, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Deng, J, Peng, S, Pathak, P.
Deposit date:2017-11-30
Release date:2018-06-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a lipid-bound viral membrane assembly protein reveals a modality for enclosing the lipid bilayer.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BR8
DownloadVisualize
BU of 6br8 by Molmil
Structure of A6 reveals a novel lipid transporter
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Protein A6 homolog, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Deng, J, Peng, S, Pathak, P.
Deposit date:2017-11-30
Release date:2018-06-20
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a lipid-bound viral membrane assembly protein reveals a modality for enclosing the lipid bilayer.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7U8X
DownloadVisualize
BU of 7u8x by Molmil
hTRAP1 with inhibitors
Descriptor: Heat shock protein 75 kDa, mitochondrial, [5-(4-fluoro-2H-isoindole-2-carbonyl)-2-hydroxyphenyl](5-methoxy-2H-isoindol-2-yl)methanone
Authors:Deng, J, Matts, R, Peng, S.
Deposit date:2022-03-09
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Elucidation of novel TRAP1-Selective inhibitors that regulate mitochondrial processes.
Eur.J.Med.Chem., 258, 2023
7U8W
DownloadVisualize
BU of 7u8w by Molmil
hTRAP1 with inhibitors
Descriptor: Heat shock protein 75 kDa, mitochondrial, [5-(4-fluoro-2H-isoindole-2-carbonyl)-2-hydroxyphenyl](5-fluoro-2H-isoindol-2-yl)methanone
Authors:Deng, J, Matts, R, Peng, S.
Deposit date:2022-03-09
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.706 Å)
Cite:Elucidation of novel TRAP1-Selective inhibitors that regulate mitochondrial processes.
Eur.J.Med.Chem., 258, 2023
7U8U
DownloadVisualize
BU of 7u8u by Molmil
hTRAP1 with inhibitors
Descriptor: Heat shock protein 75 kDa, mitochondrial, [2-hydroxy-5-(2H-isoindole-2-carbonyl)phenyl]{5-[3-(triphenyl-lambda~5~-phosphanyl)propoxy]-2H-isoindol-2-yl}methanone
Authors:Deng, J, Matts, R, Peng, S.
Deposit date:2022-03-09
Release date:2023-08-16
Method:X-RAY DIFFRACTION (3.065 Å)
Cite:Elucidation of novel TRAP1-Selective inhibitors that regulate mitochondrial processes.
Eur.J.Med.Chem., 258, 2023
7U8V
DownloadVisualize
BU of 7u8v by Molmil
hTRAP1 with inhibitors
Descriptor: (4-hydroxy-1,3-phenylene)bis[(2H-isoindol-2-yl)methanone], Heat shock protein 75 kDa, mitochondrial
Authors:Deng, J, Matts, R, Peng, S.
Deposit date:2022-03-09
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:Elucidation of novel TRAP1-Selective inhibitors that regulate mitochondrial processes.
Eur.J.Med.Chem., 258, 2023
7UR3
DownloadVisualize
BU of 7ur3 by Molmil
Hsp90 alpha inhibitor
Descriptor: (5-fluoro-1,3-dihydro-2H-isoindol-2-yl){4-hydroxy-3-[(2S)-2-hydroxy-5-phenylpentan-2-yl]phenyl}methanone, Heat shock protein HSP 90-alpha
Authors:Deng, J, Peng, S, Balch, M, Matts, R.
Deposit date:2022-04-21
Release date:2022-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-Activity Relationship Study of Tertiary Alcohol Hsp90 alpha-Selective Inhibitors with Novel Binding Mode.
Acs Med.Chem.Lett., 13, 2022
4W60
DownloadVisualize
BU of 4w60 by Molmil
The structure of Vaccina virus H7 protein displays A Novel Phosphoinositide binding fold required for membrane biogenesis
Descriptor: Late protein H7
Authors:Kolli, S, Meng, X, Wu, X, Shengjuler, D, Cameron, C.E, Xiang, Y, Deng, J.
Deposit date:2014-08-19
Release date:2014-12-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-function analysis of vaccinia virus h7 protein reveals a novel phosphoinositide binding fold essential for poxvirus replication.
J.Virol., 89, 2015
4W5X
DownloadVisualize
BU of 4w5x by Molmil
The structure of Vaccina virus H7 protein displays A Novel Phosphoinositide binding fold required for membrane biogenesis
Descriptor: Late protein H7
Authors:Kolli, S, Deng, J.
Deposit date:2014-08-19
Release date:2014-12-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Structure-function analysis of vaccinia virus h7 protein reveals a novel phosphoinositide binding fold essential for poxvirus replication.
J.Virol., 89, 2015
7RY0
DownloadVisualize
BU of 7ry0 by Molmil
human Hsp90_MC domain structure
Descriptor: DIMETHYL SULFOXIDE, GLYCEROL, Heat shock protein HSP 90-alpha
Authors:Peng, S, Deng, J, Matts, R.
Deposit date:2021-08-24
Release date:2022-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of the key residue W320 responsible for Hsp90 conformational change.
J.Biomol.Struct.Dyn., 2022

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon