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5GYR
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BU of 5gyr by Molmil
Tetrameric Allochromatium vinosum cytochrome c'
Descriptor: Cytochrome c', HEME C
Authors:Yamanaka, M, Hoshizumi, M, Nagao, S, Nakayama, R, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2016-09-23
Release date:2017-02-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers
Protein Sci., 26, 2017
3X15
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BU of 3x15 by Molmil
Dimeric Aquifex aeolicus cytochrome c555
Descriptor: Cytochrome c552, HEME C
Authors:Yamanaka, M, Nagao, S, Komori, H, Higuchi, Y, Hirota, S.
Deposit date:2014-10-29
Release date:2015-01-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping
Protein Sci., 24, 2015
1IVO
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BU of 1ivo by Molmil
Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Epidermal Growth Factor Receptor, ...
Authors:Ogiso, H, Ishitani, R, Nureki, O, Fukai, S, Yamanaka, M, Kim, J.H, Saito, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-28
Release date:2002-10-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.
Cell(Cambridge,Mass.), 110, 2002
2ZXY
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BU of 2zxy by Molmil
Crystal Structure of Cytochrome c555 from Aquifex aeolicus
Descriptor: Cytochrome c552, HEME C
Authors:Obuchi, M, Kawahara, K, Motooka, D, Nakamura, S, Yamanaka, M, Takeda, T, Uchiyama, S, Kobayashi, Y, Ohkubo, T, Sambongi, Y.
Deposit date:2009-01-09
Release date:2009-08-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Hyperstability and crystal structure of cytochrome c(555) from hyperthermophilic Aquifex aeolicus
Acta Crystallogr.,Sect.D, 65, 2009
5XED
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BU of 5xed by Molmil
Heterodimer constructed from M61A PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins
Descriptor: Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C
Authors:Zhang, M, Nakanishi, T, Yamanaka, M, Nagao, S, Yanagisawa, S, Shomura, Y, Shibata, N, Ogura, T, Higuchi, Y, Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
5XEC
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BU of 5xec by Molmil
Heterodimer constructed from PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins
Descriptor: Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C
Authors:Zhang, M, Nakanishi, T, Yamanaka, M, Nagao, S, Yanagisawa, S, Shomura, Y, Shibata, N, Ogura, T, Higuchi, Y, Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
6K7C
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BU of 6k7c by Molmil
Dimeric Shewanella violacea cytochrome c5
Descriptor: HEME C, NITRATE ION, Soluble cytochrome cA
Authors:Yang, H, Yamanaka, M, Nagao, S, Yasuhara, K, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2019-06-07
Release date:2019-09-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
6L1V
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BU of 6l1v by Molmil
Domain-swapped Alcaligenes xylosoxidans azurin dimer
Descriptor: Azurin-1, COPPER (II) ION
Authors:Cahyono, R.N, Yamanaka, M, Nagao, S, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2019-09-30
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:3D domain swapping of azurin from Alcaligenes xylosoxidans.
Metallomics, 12, 2020
4ZID
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BU of 4zid by Molmil
Dimeric Hydrogenobacter thermophilus cytochrome c552 obtained from Escherichia coli
Descriptor: Cytochrome c-552, HEME C
Authors:Hayashi, Y, Yamanaka, M, Nagao, S, Komori, H, Higuchi, Y, Hirota, S.
Deposit date:2015-04-28
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells
Sci Rep, 6, 2016
5Z25
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BU of 5z25 by Molmil
Trimeric Alpha-Helix-Inserted Circular Permutant of Cytochrome c555
Descriptor: Cytochrome c552, HEME C, TETRAETHYLENE GLYCOL
Authors:Oda, A, Nagao, S, Yamanaka, M, Ueda, I, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2017-12-28
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an alpha-Helix-Inserted Circular Permutant of Cytochrome c555.
Chem Asian J, 13, 2018
5B3I
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BU of 5b3i by Molmil
Homo-dimeric structure of cytochrome c' from Thermophilic Hydrogenophilus thermoluteolus
Descriptor: Cytochrome c prime, HEME C
Authors:Fujii, S, Oki, H, Kawahara, K, Yamane, D, Yamanaka, M, Maruno, T, Kobayashi, Y, Masanari, M, Wakai, S, Nishihara, H, Ohkubo, T, Sambongi, Y.
Deposit date:2016-02-29
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and functional insights into thermally stable cytochrome c' from a thermophile
Protein Sci., 26, 2017
5AUR
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BU of 5aur by Molmil
Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at N-terminal region
Descriptor: Cytochrome c-552, HEME C, IODIDE ION
Authors:Ren, C, Nagao, S, Yamanaka, M, Kamikubo, H, Komori, H, Shomura, Y, Higuchi, Y, Hirota, S.
Deposit date:2015-06-08
Release date:2015-10-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
5AUS
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BU of 5aus by Molmil
Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region
Descriptor: Cytochrome c-552, HEME C
Authors:Ren, C, Nagao, S, Yamanaka, M, Komori, H, Shomura, Y, Higuchi, Y, Hirota, S.
Deposit date:2015-06-08
Release date:2015-10-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
3WUI
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BU of 3wui by Molmil
Dimeric horse cytochrome c formed by refolding from molten globule state
Descriptor: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
Authors:Deshpande, M.S, Parui, P.P, Kamikubo, H, Yamanaka, M, Nagao, S, Komori, H, Kataoka, M, Higuchi, Y, Hirota, S.
Deposit date:2014-04-25
Release date:2014-07-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer.
Biochemistry, 53, 2014
1NDH
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BU of 1ndh by Molmil
CRYSTAL STRUCTURE OF NADH-CYTOCHROME B5 REDUCTASE FROM PIG LIVER AT 2.4 ANGSTROMS RESOLUTION
Descriptor: CYTOCHROME B5 REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nishida, H, Miki, K.
Deposit date:1994-10-31
Release date:1995-02-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-cytochrome b5 reductase from pig liver at 2.4 A resolution.
Biochemistry, 34, 1995
6IEI
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BU of 6iei by Molmil
Loop deletion and proline insertion mutant (deleting six residues and inserted five proline residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-09-14
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6ICS
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BU of 6ics by Molmil
Loop deletion mutant (deleting four residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-09-06
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IDC
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BU of 6idc by Molmil
Loop deletion and proline insertion mutant (deleting six residues and inserted six proline residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-09-09
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IYS
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BU of 6iys by Molmil
Loop deletion and proline insertion mutant (deleting six residues and inserted three proline residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-12-17
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6AIS
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BU of 6ais by Molmil
Loop deletion mutant (deleting two residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-08-24
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
7V5Q
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BU of 7v5q by Molmil
The dimeric structure of G80A/H81A/L137E myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Xie, C, Komori, H, Hirota, S.
Deposit date:2021-08-17
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.
Rsc Adv, 11, 2021
7V5P
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BU of 7v5p by Molmil
The dimeric structure of G80A/H81A myoglobin
Descriptor: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
Authors:Xie, C, Nagao, S, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2021-08-17
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.
Rsc Adv, 11, 2021
7V5R
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BU of 7v5r by Molmil
The dimeric structure of G80A/H81A/L137D myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Xie, C, Komori, H, Hirota, S.
Deposit date:2021-08-17
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.
Rsc Adv, 11, 2021
3VOK
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BU of 3vok by Molmil
X-ray Crystal Structure of Wild Type HrtR in the Apo Form with the Target DNA.
Descriptor: 5'-D(*AP*TP*GP*AP*CP*AP*CP*TP*GP*TP*GP*TP*CP*AP*T)-3', Transcriptional regulator
Authors:Sawai, H, Sugimoto, H, Shiro, Y, Aono, S.
Deposit date:2012-01-27
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
3VOX
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BU of 3vox by Molmil
X-ray Crystal Structure of Wild Type HrtR in the Apo Form
Descriptor: Transcriptional regulator
Authors:Sawai, H, Sugimoto, H, Shiro, Y, Aono, S.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012

 

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