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5WKA
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BU of 5wka by Molmil
Crystal structure of a GH1 beta-glucosidase retrieved from microbial metagenome of Poraque Amazon lake
Descriptor: Beta-glucosidase, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Morais, M.A.B, Toyama, D, Ramos, F.C, Zanphorlin, L.M, Tonoli, C.C.C, Miranda, F.P, Ruller, R, Henrique-Silva, F, Murakami, M.T.
Deposit date:2017-07-24
Release date:2018-03-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A novel beta-glucosidase isolated from the microbial metagenome of Lake Poraque (Amazon, Brazil).
Biochim. Biophys. Acta, 1866, 2018
6UTL
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BU of 6utl by Molmil
Yeast Thiol Specific antoxidant 2 with C171S mutation and catalytic cysteine alkylated with iodoacetamide
Descriptor: Peroxiredoxin TSA2
Authors:Tairum, C.A, Bannitz-Fernandes, R, Tonoli, C.C.C, Murakami, M.T, de Oliveira, M.A, Netto, L.E.S.
Deposit date:2019-10-29
Release date:2020-07-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Reduction of sulfenic acids by ascorbate in proteins, connecting thiol-dependent to alternative redox pathways.
Free Radic Biol Med, 156, 2020
5KB6
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BU of 5kb6 by Molmil
High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine
Descriptor: ACETATE ION, ADENOSINE, Adenosine kinase, ...
Authors:Oliveira, R.R, Neto, R.M, Polo, C.C, Tonoli, C.C.C, Murakami, M.T, Franchini, K.G.
Deposit date:2016-06-02
Release date:2017-06-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine
To Be Published
5KB5
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BU of 5kb5 by Molmil
Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
Descriptor: ADENOSINE, ADENOSINE-5'-DIPHOSPHATE, Adenosine kinase, ...
Authors:Oliveira, R.R, Neto, R.M, Polo, C.C, Tonoli, C.C.C, Murakami, M.T, Franchini, K.G.
Deposit date:2016-06-02
Release date:2017-06-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
To Be Published
7UXX
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BU of 7uxx by Molmil
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain
Descriptor: ACETATE ION, GLYCEROL, Nucleoprotein
Authors:Bezerra, E.H.S, Tonoli, C.C.C, Soprano, A.S, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2022-05-06
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor.
Sci Rep, 12, 2022
7UXZ
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BU of 7uxz by Molmil
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain complexed with Chicoric acid
Descriptor: (2R,3R)-2,3-bis{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}butanedioic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Bezerra, E.H.S, Tonoli, C.C.C, Soprano, A.S, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2022-05-06
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.733 Å)
Cite:Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor.
Sci Rep, 12, 2022
6D25
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BU of 6d25 by Molmil
Crystal structure of the GH51 arabinofuranosidase from Xanthomonas axonopodis pv. citri
Descriptor: Alpha-L-arabinosidase, GLYCEROL
Authors:Santos, C.R, Morais, M.A.B, Tonoli, C.C.C, Giuseppe, P.O, Murakami, M.T.
Deposit date:2018-04-13
Release date:2019-02-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.
Biotechnol Biofuels, 11, 2018
6EFU
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BU of 6efu by Molmil
Crystal structure of the double mutant L167W / P172L of the beta-glucosidase from Trichoderma harzianum
Descriptor: Beta-glucosidase, NITRATE ION
Authors:Morais, M.A.B, Santos, C.A, Tonoli, C.C.C, Souza, A.P, Murakami, M.T.
Deposit date:2018-08-17
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An engineered GH1 beta-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials.
Sci Rep, 9, 2019
8FWN
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BU of 8fwn by Molmil
Crystal structure of SARS-CoV-2 papain-like protease C111S mutant
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Bezerra, E.H.S, Soprano, A.S, Tonoli, C.C.C, Prado, P.F.V, da Silva, J.C, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2023-01-23
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of SARS-CoV-2 papain-like protease C111S mutant
To Be Published
8FWO
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BU of 8fwo by Molmil
Crystal structure of SARS-CoV-2 papain-like protease
Descriptor: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Bezerra, E.H.S, Soprano, A.S, Tonoli, C.C.C, Prado, P.F.V, da Silva, J.C, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
Deposit date:2023-01-23
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of SARS-CoV-2 papain-like protease
To Be Published
5BWF
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BU of 5bwf by Molmil
Crystal structure of the beta-glucosidase from Trichoderma harzianum
Descriptor: Beta-1,4-glucosidase, GLYCEROL, SULFATE ION
Authors:Santos, C.A, Zanphorlin, L.M, Crucello, A, Tonoli, C.C.C, Ruller, R, Souza, A.P, Murakami, M.T.
Deposit date:2015-06-07
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the beta-glucosidase from Trichoderma harzianum
To Be Published
6XN0
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BU of 6xn0 by Molmil
Crystal structure of GH43_1 enzyme from Xanthomonas citri
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Morais, M.A.B, Tonoli, C.C.C, Santos, C.R, Murakami, M.T.
Deposit date:2020-07-02
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.709 Å)
Cite:Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.
Nat Commun, 12, 2021
6XN1
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BU of 6xn1 by Molmil
Crystal structure of the GH43_1 enzyme from Xanthomonas citri complexed with xylose
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Morais, M.A.B, Tonoli, C.C.C, Santos, C.R, Murakami, M.T.
Deposit date:2020-07-02
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.
Nat Commun, 12, 2021
6XN2
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BU of 6xn2 by Molmil
Crystal structure of the GH43_1 enzyme from Xanthomonas citri complexed with xylotriose
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Morais, M.A.B, Tonoli, C.C.C, Santos, C.R, Murakami, M.T.
Deposit date:2020-07-02
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.
Nat Commun, 12, 2021
3GBO
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BU of 3gbo by Molmil
Crystal structure of BmooMPalpha-I, a non-hemorrhagic metalloproteinase isolated from Bothrops moojeni snake venom
Descriptor: CALCIUM ION, ZINC ION, Zinc metalloproteinase BmooMPalfa-I
Authors:Akao, P.K, Tonoli, C.C.C, Murakami, M.T.
Deposit date:2009-02-20
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural studies of BmooMPalpha-I, a non-hemorrhagic metalloproteinase from Bothrops moojeni venom.
Toxicon, 55, 2010
4L8T
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BU of 4l8t by Molmil
Structure of the Cargo Binding Domain from Human Myosin Vc
Descriptor: Unconventional myosin-Vc
Authors:Nascimento, A.F.Z, Tonoli, C.C.C, Trindade, D.M, Assis, L.H.P, Mahajan, P, Berridge, G, Krojer, T, Burgess-Brown, N, von Delft, F, Murakami, M.T.
Deposit date:2013-06-17
Release date:2013-10-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4M1R
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BU of 4m1r by Molmil
Structure of a novel cellulase 5 from a sugarcane soil metagenomic library
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cellulase 5
Authors:Paiva, J.H, Alvarez, T.M, Cairo, J.P, Paixao, D.A, Almeida, R.A, Tonoli, C.C.C, Ruiz, D.M, Ruller, R, Santos, C.R, Squina, F.M, Murakami, M.T.
Deposit date:2013-08-03
Release date:2014-02-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and function of a novel cellulase 5 from sugarcane soil metagenome.
Plos One, 8, 2013
4J5L
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BU of 4j5l by Molmil
Structure of the Cargo Binding Domain from Human Myosin Va
Descriptor: SULFATE ION, Unconventional myosin-Va
Authors:Nascimento, A.F.Z, Trindade, D.M, Tonoli, C.C.C, Assis, L.H.P, Mahajan, P, Berridge, G, Krojer, T, Vollmar, M, Burgess-Brown, N, von Delft, F, Murakami, M.T.
Deposit date:2013-02-08
Release date:2013-10-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4J5M
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BU of 4j5m by Molmil
Structure of the Cargo Binding Domain from Human Myosin Vb
Descriptor: NITRATE ION, Unconventional myosin-Vb
Authors:Nascimento, A.F.Z, Trindade, D.M, Mahajan, P, Berridge, G, Krojer, T, Vollmar, M, Tonoli, C.C.C, Assis, L.H.P, Burgess-Brown, N, von Delft, F, Murakami, M.T.
Deposit date:2013-02-08
Release date:2013-10-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
5DT5
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BU of 5dt5 by Molmil
Crystal structure of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7 in space group P21
Descriptor: Beta-glucosidase, SULFATE ION
Authors:Zanphorlin, L.M, Giuseppe, P.O, Tonoli, C.C.C, Murakami, M.T.
Deposit date:2015-09-17
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7.
Sci Rep, 6, 2016
5DT7
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BU of 5dt7 by Molmil
Crystal structure of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7 in space group C2221
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Beta-glucosidase, GLYCEROL, ...
Authors:Zanphorlin, L.M, Giuseppe, P.O, Tonoli, C.C.C, Murakami, M.T.
Deposit date:2015-09-17
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7.
Sci Rep, 6, 2016
3N98
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BU of 3n98 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose and additives
Descriptor: 1,4-DIETHYLENE DIOXIDE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3NGS
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BU of 3ngs by Molmil
Structure of Leishmania nucleoside diphosphate kinase b with ordered nucleotide-binding loop
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Nucleoside diphosphate kinase, PHOSPHATE ION
Authors:Trindade, D.M, Sousa, T.A.C.B, Tonoli, C.C.C, Santos, C.R, Arni, R.K, Ward, R.J, Oliveira, A.H.C, Murakami, M.T.
Deposit date:2010-06-13
Release date:2011-04-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Mol Biosyst, 7, 2011
3N8T
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BU of 3n8t by Molmil
Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis
Descriptor: DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, alpha-amylase, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N92
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BU of 3n92 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose
Descriptor: alpha-amylase, GH57 family, beta-D-glucopyranose
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011

 

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